TCONS_00055907 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055907
Unique NameTCONS_00055907
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length737

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055907 ID=TCONS_00055907|Name=TCONS_00055907|organism=Clytia hemisphaerica|type=transcript|length=737bp
aaataactttggaaaaaatataagGAATAAGCAATAGGGATAAGCGAAGA
CATCTGGAAAAGAAGTTTTTTTAGTCGACCATACTTGTTAGTCATACACA
CctataatatttttcttttggagggaagaaatttggaaaatatttatGAG
CGAGAAGTGAGGTCTTGTCCAAACAGTCCTGGGAATGTGGTTGAGTGGTT
GAAAAGGAGTGTTATCAGACAGCTCACAAGAAGGTTCGTTTTGCTaggat
tttttggaaaaatatacacaGACATtatgtttttctaaaaataaaaaaca
aggaaaaacatATTTTGGAAGAATAGGGAAAAATAACacctctttttttc
ttttggaattgggatatagaaaatgaaaagtgggggaacagaattgaaaa
agatACGACATATATAAAATGTTCAAATGTAATTTGTTGTATAACAAGGA
GGTGTTATGTCTTCagagtttcttctttttcttctttcaatcCTGAAGGA
ATGCTTTACAAGTGGAGAATTAAGTCAcagaaaaaaacaccaaagtaaTG
ACCTAGCGTAAAAAACGAGAGCGATATTTGGTTCAGGATGATTTTAGTGT
TAGTGTCGATATTCTATATAATGAATGTTGATTGGTAAAGGATATTTGCT
TTGCACTCATtgaaaaaatgtcacaaataccTACTACAATAAAGGGCAGC
ATATAAAACTTAATGGAAACTATTGACATTTAagatc
Run BLAST on NCBI

transcript from alignment at scaffold_265:64981..65717

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055907 ID=TCONS_00055907|Name=TCONS_00055907|organism=Clytia hemisphaerica|type=transcript|length=737bp|location=Sequence derived from alignment at scaffold_265:64981..65717 (Clytia hemisphaerica)
gatctTAAATGTCAATAGTTTCCATTAAGTTTTATATGCTGCCCTTTATT
GTAGTAggtatttgtgacattttttcaATGAGTGCAAAGCAAATATCCTT
TACCAATCAACATTCATTATATAGAATATCGACACTAACACTAAAATCAT
CCTGAACCAAATATCGCTCTCGTTTTTTACGCTAGGTCAttactttggtg
tttttttctgTGACTTAATTCTCCACTTGTAAAGCATTCCTTCAGgattg
aaagaagaaaaagaagaaactctGAAGACATAACACCTCCTTGTTATACA
ACAAATTACATTTGAACATTTTATATATGTCGTatctttttcaattctgt
tcccccacttttcattttctatatcccaattccaaaagaaaaaaagaggt
GTTATTTTTCCCTATTCTTCCAAAATatgtttttccttgttttttatttt
tagaaaaacataATGTCtgtgtatatttttccaaaaaatcctAGCAAAAC
GAACCTTCTTGTGAGCTGTCTGATAACACTCCTTTTCAACCACTCAACCA
CATTCCCAGGACTGTTTGGACAAGACCTCACTTCTCGCTCataaatattt
tccaaatttcttccctccaaaagaaaaatattatagGTGTGTATGACTAA
CAAGTATGGTCGACTAAAAAAACTTCTTTTCCAGATGTCTTCGCTTATCC
CTATTGCTTATTCcttatattttttccaaagttattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035203XLOC_035203Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055907-exon-scaffold_265-1491911889:64981..65717TCONS_00055907-exon-scaffold_265-1491911889:64981..65717Clytia hemisphaericaexon
TCONS_00055907-exon-scaffold_265-1510915933:64981..65717TCONS_00055907-exon-scaffold_265-1510915933:64981..65717Clytia hemisphaericaexon
TCONS_00055907-exon-scaffold_265-1575043694:64981..65717TCONS_00055907-exon-scaffold_265-1575043694:64981..65717Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_265supercontigscaffold_265:64981..65717 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0671927	0	0	0.0744314	0.0906131	0	0	0.161749	0.113244	0.140271	0.13615	0.13425	0	0	0.0381542	0.0409453	0.100883	0.0517007	0.142855	0	0.0649657	0.095064	0.0770418	0.0700422	0.144284	0.12877	0	0	0.149157	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055907 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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