TCONS_00055911 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055911
Unique NameTCONS_00055911
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055911 ID=TCONS_00055911|Name=TCONS_00055911|organism=Clytia hemisphaerica|type=transcript|length=1411bp
GGCAAGTGTACGGTACCTCATTGGCAACGAAATTAGACCAATTACTGGAG
GGGTAACTACATGGTAAAAACCTTATATTGCAGTTTCACACCCTTTAAAG
GATATCCCTAGTGCACCGTTACTATTTCcggtaaaaacattttttaccgA
AAAGGAGCTGATCAATGATAATTTAGGTGAGATGAAAGCGATCAAACAAG
GAAAGAAAAATCAGACGCAGCAGTCATTGCTGAGTTATCAGGAAATCGTT
CGGTGTGATTAAGGTGAATATTTGAAATAGTTTTCATTTTAAGCTGTAAA
gagatttctcttttgcacgaTAATATGAAAAAAGAAGGGCTGGAGCTTAA
AGAGGTTTAAATCACAACGGGTATTTTACGTCTTAAAGGCAAGTTGTAAT
TAAAACAGATTTAGACTCAGTTGAGTTTAATCCTGTGCAATAGATACAAA
AAGCTTAAATTCCAAATTATTTTTAGCTTCATTGCAAAGGGACTTTGATA
TTGATTGCAACTTATCAATATTTTCAGGTTTAAAAGTATCTTGTTTCTTG
GTTCGTTCAAAAGTTTGGAGACCAGGCTTTAAAATGTAGAAATATAACAT
ATAATCACTGCTTACACATAATATCAGCTAGACGATTCCATTGTGAAGAC
CAAGTCACTAAAAAGGGTAAAATTTTGAAGACAGGATGATTGTAAAACAT
TCATAGATGGGAGCAATCGGAATGAATTGTGGATAGGTGTTGACGTTTGT
CCCGAACTCTGTCGCTGCTTTTTCACCTAAACCTCCAATTACGGCTTTAA
GCTTCTGATCTTATTTTTAGGGCtaaattgaggtattttgggTTTTGTAC
TCCATTTTAGTACGTTGATCCTTAACTTAGTAACTTAACTTTCCAGGCTG
AGAATTGTTCTATAAAAAGTGTAGTTTGTCCGTTTACCGACTAATTCGTT
GGGACTGCTTTTATTGAgttaaaaagttcaaaagtcgAATACCGGTATCC
AAGCCTTTTTACATAACATCATTCTCTTGCAGTGACACAGGAGTTTTCAC
AATATTCTTAGTTTGTTTAGTATATATTTAGCGTACAATATATTCTGACC
CCTAATCTCAAAACATACCGTTCCATAATGCACACCACNAGTATATATTT
AGCGTACCATATATTCTGACCCCTAATCTCAAAACATACCGTTCATAATG
CACACCACGCtgtgctctaaagggatgtggcGAATGTGCTGGTCTGACCT
ATAGTTTACGGCCAAACCATTGCAAAAACGCATTGTCTCTTAccaaaaac
gaaagcgaaagcgactgggcTCTAATGTTTCTGTTTATGATTGAAGCCAG
TTTTGTGCGGTTGTTTTGGACATTTTGTTAGTAGTCACACGTTTTCttta
caagaacaaac
Run BLAST on NCBI

transcript from alignment at scaffold_265:70800..72210

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055911 ID=TCONS_00055911|Name=TCONS_00055911|organism=Clytia hemisphaerica|type=transcript|length=1411bp|location=Sequence derived from alignment at scaffold_265:70800..72210 (Clytia hemisphaerica)
gtttgttcttgtaaaGAAAACGTGTGACTACTAACAAAATGTCCAAAACA ACCGCACAAAACTGGCTTCAATCATAAACAGAAACATTAGAgcccagtcg ctttcgctttcgtttttggTAAGAGACAATGCGTTTTTGCAATGGTTTGG CCGTAAACTATAGGTCAGACCAGCACATTCgccacatccctttagagcac aGCGTGGTGTGCATTATGAACGGTATGTTTTGAGATTAGGGGTCAGAATA TATGGTACGCTAAATATATACTNGTGGTGTGCATTATGGAACGGTATGTT TTGAGATTAGGGGTCAGAATATATTGTACGCTAAATATATACTAAACAAA CTAAGAATATTGTGAAAACTCCTGTGTCACTGCAAGAGAATGATGTTATG TAAAAAGGCTTGGATACCGGTATTcgacttttgaactttttaacTCAATA AAAGCAGTCCCAACGAATTAGTCGGTAAACGGACAAACTACACTTTTTAT AGAACAATTCTCAGCCTGGAAAGTTAAGTTACTAAGTTAAGGATCAACGT ACTAAAATGGAGTACAAAAcccaaaatacctcaatttaGCCCTAAAAATA AGATCAGAAGCTTAAAGCCGTAATTGGAGGTTTAGGTGAAAAAGCAGCGA CAGAGTTCGGGACAAACGTCAACACCTATCCACAATTCATTCCGATTGCT CCCATCTATGAATGTTTTACAATCATCCTGTCTTCAAAATTTTACCCTTT TTAGTGACTTGGTCTTCACAATGGAATCGTCTAGCTGATATTATGTGTAA GCAGTGATTATATGTTATATTTCTACATTTTAAAGCCTGGTCTCCAAACT TTTGAACGAACCAAGAAACAAGATACTTTTAAACCTGAAAATATTGATAA GTTGCAATCAATATCAAAGTCCCTTTGCAATGAAGCTAAAAATAATTTGG AATTTAAGCTTTTTGTATCTATTGCACAGGATTAAACTCAACTGAGTCTA AATCTGTTTTAATTACAACTTGCCTTTAAGACGTAAAATACCCGTTGTGA TTTAAACCTCTTTAAGCTCCAGCCCTTCTTTTTTCATATTAtcgtgcaaa agagaaatctcTTTACAGCTTAAAATGAAAACTATTTCAAATATTCACCT TAATCACACCGAACGATTTCCTGATAACTCAGCAATGACTGCTGCGTCTG ATTTTTCTTTCCTTGTTTGATCGCTTTCATCTCACCTAAATTATCATTGA TCAGCTCCTTTTcggtaaaaaatgtttttaccgGAAATAGTAACGGTGCA CTAGGGATATCCTTTAAAGGGTGTGAAACTGCAATATAAGGTTTTTACCA TGTAGTTACCCCTCCAGTAATTGGTCTAATTTCGTTGCCAATGAGGTACC GTACACTTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035207XLOC_035207Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055911-exon-scaffold_265-1491911889:70800..72210TCONS_00055911-exon-scaffold_265-1491911889:70800..72210Clytia hemisphaericaexon
TCONS_00055911-exon-scaffold_265-1510915933:70800..72210TCONS_00055911-exon-scaffold_265-1510915933:70800..72210Clytia hemisphaericaexon
TCONS_00055911-exon-scaffold_265-1575043694:70800..72210TCONS_00055911-exon-scaffold_265-1575043694:70800..72210Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_265supercontigscaffold_265:70800..72210 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (0.0815434 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0287824 0 0.0653907 0.0398034 0 0.037947 0 0.0497444 0.0308083 0.0299033 0 0.0392598 0.0815434 0 0.017986 0.0221572 0.0227105 0.0627515 0.0328324 0.0570747 0 0.033842 0.0307673 0 0.0282822 0 0 0.03276 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055911 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
200400600800100012001400Sequence
Match NameE-valueIdentityDescription
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