TCONS_00055912 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055912
Unique NameTCONS_00055912
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length614

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055912 ID=TCONS_00055912|Name=TCONS_00055912|organism=Clytia hemisphaerica|type=transcript|length=614bp
CTGTACACTTTGACAGATATCGAACCATCTTCGTTTCTTTTCAACAGAGT
GTCTAGAAATGGAAGTTGACAATCTTGTTCCTCTTCTATTGTAAACTTAA
TCTTGGTTTCTAACGAGTTGATATGATCATGACATTTCTGTATATCTGCT
CGTTTTATGACACAGAAAGTATCGTCTACAAAACGTTCATATACTTTGGG
AGGTGACAGGAAGGTACTTATAGAGCTCTTTTTTCGTGACTTTGCATGAA
TATTTCTGCGACAACTGAGCTTGCTGGTCCTTCCATTGCAACTCCGTCAT
TTTGTTTGTAGAACTTTCCGTTATACATGAACCAAGTTTTTGTCAGAAGG
AAATTTACTATGTTCGAGAAATCATCTATTTTCTCTACAAAATAGAGAAA
ATCCTGCAGAAGAAAACGAGCTGAATAGATTCAAGTTACCTTATATTGCA
GGAATAAGTGAAATGATCAAAAGAACACTTGGACTTCATAACATACAGAG
TGTACTTTCTATTCCAATGATACATTGAGAAGACAATTATCGAAACCCAA
AGACACAGTTCCTATGGACAAAAGGAACAATGTCGTATACAAAATCCCTT
GTAAAGACTGTAAT
Run BLAST on NCBI

transcript from alignment at scaffold_265:76904..77517

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055912 ID=TCONS_00055912|Name=TCONS_00055912|organism=Clytia hemisphaerica|type=transcript|length=614bp|location=Sequence derived from alignment at scaffold_265:76904..77517 (Clytia hemisphaerica)
ATTACAGTCTTTACAAGGGATTTTGTATACGACATTGTTCCTTTTGTCCA
TAGGAACTGTGTCTTTGGGTTTCGATAATTGTCTTCTCAATGTATCATTG
GAATAGAAAGTACACTCTGTATGTTATGAAGTCCAAGTGTTCTTTTGATC
ATTTCACTTATTCCTGCAATATAAGGTAACTTGAATCTATTCAGCTCGTT
TTCTTCTGCAGGATTTTCTCTATTTTGTAGAGAAAATAGATGATTTCTCG
AACATAGTAAATTTCCTTCTGACAAAAACTTGGTTCATGTATAACGGAAA
GTTCTACAAACAAAATGACGGAGTTGCAATGGAAGGACCAGCAAGCTCAG
TTGTCGCAGAAATATTCATGCAAAGTCACGAAAAAAGAGCTCTATAAGTA
CCTTCCTGTCACCTCCCAAAGTATATGAACGTTTTGTAGACGATACTTTC
TGTGTCATAAAACGAGCAGATATACAGAAATGTCATGATCATATCAACTC
GTTAGAAACCAAGATTAAGTTTACAATAGAAGAGGAACAAGATTGTCAAC
TTCCATTTCTAGACACTCTGTTGAAAAGAAACGAAGATGGTTCGATATCT
GTCAAAGTGTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035208XLOC_035208Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055912-exon-scaffold_265-1491911889:76904..77517TCONS_00055912-exon-scaffold_265-1491911889:76904..77517Clytia hemisphaericaexon
TCONS_00055912-exon-scaffold_265-1510915933:76904..77517TCONS_00055912-exon-scaffold_265-1510915933:76904..77517Clytia hemisphaericaexon
TCONS_00055912-exon-scaffold_265-1575043694:76904..77517TCONS_00055912-exon-scaffold_265-1575043694:76904..77517Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_265supercontigscaffold_265:76904..77517 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0875994	0.0854232	0.0991845	0.388146	0.472531	0.09335	0.225246	0	0.295273	0.0914359	0	0	0	0	0	0	0.131521	0.0674024	0.37248	0.389774	1.77862	1.36329	0	0.547886	0.0940516	0.251816	0.360348	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055912 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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