TCONS_00055917 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055917
Unique NameTCONS_00055917
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2001

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055917 ID=TCONS_00055917|Name=TCONS_00055917|organism=Clytia hemisphaerica|type=transcript|length=2001bp
AATGAGATGCCTTTACATTGCCAATTATGTAAATGACGTCGTTATTTTTT
GTGAATAGATTTCTCATCTGTGACAAAAAGATTAAATATAAGTCCAGCTG
TGAGTACAGAGTCATATTTTCATGTTTATGTAATGTCAATTATTTTATTA
ACATCAAGACAGATTTTATAACTGaatggaatattttttttgaacatCAG
GACGAAGTTTCAACAGCATGAAATGTCAATACAAAGTTTCTCGTGAGATA
AAATGCTAGTTTGATGTTGTGAGATATATTGTTGgggtttgtttttctct
ttcgtAACAAGATGAACCAGATAGAAAATCAAGAGGATTGCTTTAAAGTT
GCTTTAAAAGAactgaatgaaaacattgatACCCGTTCTCTGGATATCGA
AGCCATCCGAGATCGTATCAAACTTCGTCCCGATATTCTGATTAACCGTG
ACGATGATGAATTTCTCGTACGATTTCTTCGGGCGCGCAAATACAACAAA
GATAAAGCTTTCGAGCTGCTTTGTAATTATTGTCAGTTCAGACGGAAAca
tcaaatgtttttcaaatcgCTGAAAGTGTCATGTTTACGACCTGTATTTG
AAGATGGACTACCGATGGTATCGCCTGTAAGGGACCAGTTAGGAAGGAGt
gttattttcttgttttctggCAACTGGAATACTTCTTTGTATACTTTTGA
AGACATTCTAAGAGCGTTATTACNGACCAGTTAGGAAGGAGtgttatttt
cttgttttctggCAACTGGAATACTTCTTTGTATACTTTTGAAGACATTC
TAAGAGCGTTATTACTGACTGTTGAATATTTGATCGAAAGCGAAAGGACA
CAAATGTTTGGTGTAACTCTAGTGATCGACTTTACGGGATGGAAATTAGG
AGACACAAAGTTGATAAACAAACAACATTTACTGGACGCTGTCAATGTTT
TCCAGAACTGTTTTCCTGCCAGATTTAAAGGGATTCACTTGATCAACCAG
CCGTGATATACTACCATGGTAAAGACATGTTCGCTTTGCAGAAGTACATC
AAACCAGAAGCATTGCCCATAGAACTTGGTGGTGATATGAACATTCCAGA
CAAATCATGGCTTTATAATGCTCTGCTGGAGCGAGAACTGAAAAAAGAAC
AGAATAGAGGCAAGAAACATCGCAAAAATTTCGCCTATTGATTTACTTCA
GGAGCTGATTTAACAAGCTTTCACCTTTCTAATTTCGTCGTAAAACTCAT
CTCGGGTACTGAAAGCATCCTCTATCAATTAATATTTTCAACATCTCCTT
CTATCGTTCAATTCTTCTTGTACCAGCCTCATTCCTCCCCCTTATTCCGA
CCTCTACTCATTAAGATTTGGTGATTTTTCCAATATAAGCCACTCATTCC
GACCACCACAGTAGCCTTCTCAGGGCTGTTGGAAtttttgtgtaggagag
cacaATTTGTTACCTTACAGTATACTATGTTGTTGCGGAGTAATTATCTT
TAAAtgttatgaatagataattactttgtcataaaaatctactcTACTGC
ACAGATTTTCCAACACCCCCTGAGAACGCTTACGCAAGTCCctattttaa
tctttttttcgtCGTTTTtcgtttcttcaattttttcgtGTATTTTTTGT
TCGATTCTGGTTAATCAATCAACTGGTGTGTAatggactctcgctaattc
gaacgaCGAATCTCATTAATCTCGATTTATAGAGAGATTGGAATAAAAAT
AGTTTGAATTAGCAAGAGTTCACTGTTTATTTTccttatttattttgaaa
atatttattcaagcCGCGGTCTTTATTTTTAATGTAAAATAATATGAATT
TGTACATACGCTTTATTTTAGTCATTTTAAAACTCAAACACTTTGAAATG
ACATGAAATTTGTTAGAAGAGTTTAGTGCTTAAAATAGCCTGGTCTAcaa
tttgagatatttttccCCGTACGTGATGATCATTCGAGTAATGACCTTTG
G
Run BLAST on NCBI

protein sequence of TCONS_00055917-protein

>TCONS_00055917-protein ID=TCONS_00055917-protein|Name=TCONS_00055917-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MNQIENQEDCFKVALKELNENIDTRSLDIEAIRDRIKLRPDILINRDDDE
FLVRFLRARKYNKDKAFELLCNYCQFRRKHQMFFKSLKVSCLRPVFEDGL
PMVSPVRDQLGRSVIFLFSGNWNTSLYTFEDILRALLXTS
Run BLAST on NCBI

transcript from alignment at scaffold_266:55000..57859+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055917 ID=TCONS_00055917|Name=TCONS_00055917|organism=Clytia hemisphaerica|type=transcript|length=2860bp|location=Sequence derived from alignment at scaffold_266:55000..57859+ (Clytia hemisphaerica)
AATGAGATGCCTTTACATTGCCAATTATGTAAATGACGTCGTTATTTTTT
GTGAATAGATTTCTCATCTGTGACAAAAAGATTAAATATAAGTCCAGCTG
TGAGTACAGAGTCATATTTTCATGTTTATGTAATGTCAATTATTTTATTA
ACATCAAGACAGATTTTATAACTGaatggaatattttttttgaacatCAG
GACGAAGTTTCAACAGCATGAAATGTCAATACAAAGTTTCTCGTGAGATA
AAATGCTAGTTTGATGTTGTGAGATATATTGTTGgggtttgtttttctct
ttcgtAACAAGATGAACCAGATAGAAAATCAAGAGGATTGCTTTAAAGTT
GCTTTAAAAGAactgaatgaaaacattgatACCCGTTCTCTGGATATCGA
AGCCATCCGAGATCGTATCAAACTTCGTCCCGATATTCTGATTAACCGTG
ACGATGATGAATTTCTCGTACGATTTCTTCGGGCGCGCAAATACAACAAA
GATAAAGCTTTCGAGCTGCTTTGTAATTATTGTCAGTTCAGACGGAAAca
tcaaatgtttttcaaatcgCTGAAAGTGTCATGTTTACGACCTGTATTTG
AAGATGGACTACCGATGGTATCGCCTGTAAGGGACCAGTTAGGAAGGAGt
gttattttcttgttttctggCAACTGGAATACTTCTTTGTATACTTTTGA
AGACATTCTAAGAGCGTTATTACNGACCAGTTAGGAAGGAGtgttatttt
cttgttttctggCAACTGGAATACTTCTTTGTATACTTTTGAAGACATTC
TAAGAGCGTTATTACTGACTGTTGAATATTTGATCGAAAGCGAAAGGACA
CAAATGTTTGGTGTAACTCTAGTGATCGACTTTACGGGATGGAAATTAGG
AGACACAAAGTTGATAAACAAACAACATTTACTGGACGCTGTCAATGTTT
TCCAGAACTGTTTTCCTGCCAGATTTAAAGGGATTCACTTGATCAACCAG
CCGTGGTATGTGAGGGTGATGTTAACACTTATCAAACCCTCCTTGAAAAT
CAAAGCTCAGAATAGGGTAAGTAGTCAATAATTTAATCTTTGTTTATGAC
TTAACATTTAGCTCACAGTGGGGTTTACTAAGTTTAAAAAGTNAAGTAGT
CAATAATTTAATCTTTGTTTATGACTTAACATTTAGCTCACAGGGGGGTT
TACTAAGTTTAAAAAGTAAGACACTTCTGTCTCAGCAGTTCCTTTAGCTG
ATAAGGAGCTGATAAGAATGCAAATGAAGCAATCATTCTGATAAAAATCT
CCGTACTGGCTTTCACCATTATATTTTCCATCCCAAATTTTAAGCAATTA
AGTGGGTGCGGTTATTCGTCTTGAAAACTTCAATAATCGGAGCAATAAAA
TATCGCAACCAGTTAATCAGAAGTGTGGCTAAATTTCCTTGCCCTTTGTT
ATGATTCCTGTGAAGACTAAACCTTCATACCCAGGACTTNTAAGACACTT
CTGTCTCAGCAGTTCCTTTAGCTGATAAGGAGCTGATAAGAATGCAAATG
AAGCAATCATTCTGATAAAAATCTCCGTACTGTAGAAGGGAGCTGGCTTT
CACCATTATATTTTCCATCCCAAATTTTAAGCAATTAAGCGGGTGCGCTT
ATCGTCTTGAAAACTTCAATAATCGGAGCAATAAAATATCGCAACCAGTT
AATCAGAAGTGTGACTAAATTTCCTTGCCCTTTGTTATGATTCCTGTGAA
GACTAAACCTTCATACCCAGGACTTACAAGCCATAGACGTGAATCTAACA
CTCATATCTCTAAAAAGGAAAGTAAAgggttttaaatttttgcaatattt
ttttctttctacagATATACTACCATGGTAAAGACATGTTCGCTTTGCAG
AAGTACATCAAACCAGAAGCATTGCCCATAGAACTTGGTGGTGATATGAA
CATTCCAGACAAATCATGGCTTTATAATGCTCTGCTGGAGCGAGAACTGA
AAAAAGAACAGAATAGAGGCAAGAAACATCGCAAAAATTTCGCCTATTGA
TTTACTTCAGGAGCTGATTTAACAAGCTTTCACCTTTCTAATTTCGTCGT
AAAACTCATCTCGGGTACTGAAAGCATCCTCTATCAATTAATATTTTCAA
CATCTCCTTCTATCGTTCAATTCTTCTTGTACCAGCCTCATTCCTCCCCC
TTATTCCGACCTCTACTCATTAAGATTTGGTGATTTTTCCAATATAAGCC
ACTCATTCCGACCACCACAGTAGCCTTCTCAGGGCTGTTGGAAtttttgt
gtaggagagcacaATTTGTTACCTTACAGTATACTATGTTGTTGCGGAGT
AATTATCTTTAAAtgttatgaatagataattactttgtcataaaaatcta
ctcTACTGCACAGATTTTCCAACACCCCCTGAGAACGCTTACGCAAGTCC
ctattttaatctttttttcgtCGTTTTtcgtttcttcaattttttcgtGT
ATTTTTTGTTCGATTCTGGTTAATCAATCAACTGGTGTGTAatggactct
cgctaattcgaacgaCGAATCTCATTAATCTCGATTTATAGAGAGATTGG
AATAAAAATAGTTTGAATTAGCAAGAGTTCACTGTTTATTTTccttattt
attttgaaaatatttattcaagcCGCGGTCTTTATTTTTAATGTAAAATA
ATATGAATTTGTACATACGCTTTATTTTAGTCATTTTAAAACTCAAACAC
TTTGAAATGACATGAAATTTGTTAGAAGAGTTTAGTGCTTAAAATAGCCT
GGTCTAcaatttgagatatttttccCCGTACGTGATGATCATTCGAGTAA
TGACCTTTGG

Coding sequence (CDS) from alignment at scaffold_266:55000..57859+

>TCONS_00055917 ID=TCONS_00055917|Name=TCONS_00055917|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at scaffold_266:55000..57859+ (Clytia hemisphaerica)
ATGAACCAGATAGAAAATCAAGAGGATTGCTTTAAAGTTGCTTTAAAAGA
actgaatgaaaacattgatACCCGTTCTCTGGATATCGAAGCCATCCGAG
ATCGTATCAAACTTCGTCCCGATATTCTGATTAACCGTGACGATGATGAA
TTTCTCGTACGATTTCTTCGGGCGCGCAAATACAACAAAGATAAAGCTTT
CGAGCTGCTTTGTAATTATTGTCAGTTCAGACGGAAAcatcaaatgtttt
tcaaatcgCTGAAAGTGTCATGTTTACGACCTGTATTTGAAGATGGACTA
CCGATGGTATCGCCTGTAAGGGACCAGTTAGGAAGGAGtgttattttctt
gttttctggCAACTGGAATACTTCTTTGTATACTTTTGAAGACATTCTAA
GAGCGTTATTACNGACCAGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035212XLOC_035212Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055917-proteinTCONS_00055917-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055917-exon-scaffold_266-1491911889:55000..56004TCONS_00055917-exon-scaffold_266-1491911889:55000..56004Clytia hemisphaericaexon
TCONS_00055917-exon-scaffold_266-1510915933:55000..56004TCONS_00055917-exon-scaffold_266-1510915933:55000..56004Clytia hemisphaericaexon
TCONS_00055917-exon-scaffold_266-1575043694:55000..56004TCONS_00055917-exon-scaffold_266-1575043694:55000..56004Clytia hemisphaericaexon
TCONS_00055917-exon-scaffold_266-1491911889:56864..57859TCONS_00055917-exon-scaffold_266-1491911889:56864..57859Clytia hemisphaericaexon
TCONS_00055917-exon-scaffold_266-1510915933:56864..57859TCONS_00055917-exon-scaffold_266-1510915933:56864..57859Clytia hemisphaericaexon
TCONS_00055917-exon-scaffold_266-1575043694:56864..57859TCONS_00055917-exon-scaffold_266-1575043694:56864..57859Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_266supercontigscaffold_266:55000..57859 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0791914	0.0965301	0	0.0438614	0	0.0940464	2.71118	2.69387	2.16927	2.56198	1.48809	1.3958	1.4875	1.60559	0.333132	0.23859	1.86241	3.37632	2.22708	3.27697	2.75346	3.03188	1.30864	0.606296	10.1865	5.17907	0.661588	1.17167	0.552837	1.21068
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001071CRAL-bd_toc_tran
IPR011074CRAL/TRIO_N_dom
IPR001251CRAL-TRIO_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0005622 intracellular
molecular_function GO:0005215 transporter activity
Blast
[Close]
BLAST of TCONS_00055917 vs. Swiss-Prot (Human)
Match: CLVS2 (Clavesin-2 OS=Homo sapiens GN=CLVS2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.864e-25
Identity = 55/125 (44.00%), Postives = 78/125 (62.40%), Query Frame = 3 
Query:  360 ELNENIDTRSLDIEAIRDRIKLRPDILINRDDDEFLVRFLRARKYNKDKAFELLCNYCQFRRKHQMFFKSLKVS--CLRPVFEDGLPMVSPVRDQLGRSVIFLFSGNWNTSLYTFEDILRALLXT 728
            ELNEN DT   DI+ +RD +  RPDI   R DD F++RFLRARK++  +AF LL  Y ++R+++   FKS K +   ++   +DG P      D  GR ++ LF+ NW+ S YT  DILRA+L +
Sbjct:   19 ELNENPDTLHQDIQEVRDMVITRPDIGFLRTDDAFILRFLRARKFHHFEAFRLLAQYFEYRQQNLDMFKSFKATDPGIKQALKDGFPGGLANLDHYGRKILVLFAANWDQSRYTLVDILRAILLS 143

HSP 2 Score: 86.2705 bits (212), Expect = 4.706e-20
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 2 
Query:  725 DQLGRSVIFLFSGNWNTSLYTFEDILRALLLTVEYLIESERTQMFGVTLVIDFTGWKLGDTKLINKQHLLDAVNVFQNCFPARFKGIHLINQP*YTTMVKTC 1030
            D  GR ++ LF+ NW+ S YT  DILRA+LL++E +IE    Q+ G  L+ID++ +       +    L  A+   Q+ FPARF GIH +NQP Y   + T 
Sbjct:  112 DHYGRKILVLFAANWDQSRYTLVDILRAILLSLEAMIEDPELQVNGFVLIIDWSNFTFKQASKLTPSMLRLAIEGLQDSFPARFGGIHFVNQPWYIHALYTV 213

HSP 3 Score: 30.8018 bits (68), Expect = 4.706e-20
Identity = 12/26 (46.15%), Postives = 17/26 (65.38%), Query Frame = 1 
Query: 1006 IYYHGKDMFALQKYIKPEALPIELGG 1083
            I+ HG ++ +L + I PE LP E GG
Sbjct:  226 IFLHGNNLNSLHQLIHPEILPSEFGG 251
The following BLAST results are available for this feature:
BLAST of TCONS_00055917 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CLVS27.864e-2544.00Clavesin-2 OS=Homo sapiens GN=CLVS2 PE=2 SV=1[more]
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