TCONS_00056038 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056038
Unique NameTCONS_00056038
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056038 ID=TCONS_00056038|Name=TCONS_00056038|organism=Clytia hemisphaerica|type=transcript|length=400bp
CCCTTTAACGTAGAAACGATAGGTCTTCTCCTTTTGAAGCAATGTTTGGT
TGTCATTGCCTTTGGGTGAATTTGGTGCAGTTTGTTCAATTTGATCGTCC
TTGGGATGGTCTGGTGCAGATGTCTTTTTGCGGGTTTCTTTGGGAAAGTT
TGGTGCAGGCATTTCTGTTAAGTCCTCATCAAGGAGATTGATTTGATCAA
TATTCTCAAGATCTGGATATATTCTTTCTATTTGTCGATTTGGAAGATCT
GGTATTGGTTGGTAGGGTAAGTTGGTGAATTGGTTTTGTCTTTGGGTTTC
TGGAGAGCTGCTTAATTCTGGCTGGGTAGGTGGTGTAGAATCTTTATTCT
TTATgaaccttttcttttttccacAATCATCTTGTGGGATTTTGGTTAGT
Run BLAST on NCBI

protein sequence of TCONS_00056038-protein

>TCONS_00056038-protein ID=TCONS_00056038-protein|Name=TCONS_00056038-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
LTKIPQDDCGKKKRFIKNKDSTPPTQPELSSSPETQRQNQFTNLPYQPIP
DLPNRQIERIYPDLENIDQINLLDEDLTEMPAPNFPKETRKKTSAPDHPK
DDQIEQTAPNSPKGNDNQTLLQKEKTYRFYVKG
Run BLAST on NCBI

transcript from alignment at scaffold_266:98112..98511

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056038 ID=TCONS_00056038|Name=TCONS_00056038|organism=Clytia hemisphaerica|type=transcript|length=400bp|location=Sequence derived from alignment at scaffold_266:98112..98511 (Clytia hemisphaerica)
ACTAACCAAAATCCCACAAGATGATTgtggaaaaaagaaaaggttcATAA
AGAATAAAGATTCTACACCACCTACCCAGCCAGAATTAAGCAGCTCTCCA
GAAACCCAAAGACAAAACCAATTCACCAACTTACCCTACCAACCAATACC
AGATCTTCCAAATCGACAAATAGAAAGAATATATCCAGATCTTGAGAATA
TTGATCAAATCAATCTCCTTGATGAGGACTTAACAGAAATGCCTGCACCA
AACTTTCCCAAAGAAACCCGCAAAAAGACATCTGCACCAGACCATCCCAA
GGACGATCAAATTGAACAAACTGCACCAAATTCACCCAAAGGCAATGACA
ACCAAACATTGCTTCAAAAGGAGAAGACCTATCGTTTCTACGTTAAAGGG

Coding sequence (CDS) from alignment at scaffold_266:98112..98511

>TCONS_00056038 ID=TCONS_00056038|Name=TCONS_00056038|organism=Clytia hemisphaerica|type=CDS|length=399bp|location=Sequence derived from alignment at scaffold_266:98112..98511 (Clytia hemisphaerica)
CTAACCAAAATCCCACAAGATGATTgtggaaaaaagaaaaggttcATAAA
GAATAAAGATTCTACACCACCTACCCAGCCAGAATTAAGCAGCTCTCCAG
AAACCCAAAGACAAAACCAATTCACCAACTTACCCTACCAACCAATACCA
GATCTTCCAAATCGACAAATAGAAAGAATATATCCAGATCTTGAGAATAT
TGATCAAATCAATCTCCTTGATGAGGACTTAACAGAAATGCCTGCACCAA
ACTTTCCCAAAGAAACCCGCAAAAAGACATCTGCACCAGACCATCCCAAG
GACGATCAAATTGAACAAACTGCACCAAATTCACCCAAAGGCAATGACAA
CCAAACATTGCTTCAAAAGGAGAAGACCTATCGTTTCTACGTTAAAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035262XLOC_035262Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056038-exon-scaffold_266-1491911889:98112..98511TCONS_00056038-exon-scaffold_266-1491911889:98112..98511Clytia hemisphaericaexon
TCONS_00056038-exon-scaffold_266-1510915933:98112..98511TCONS_00056038-exon-scaffold_266-1510915933:98112..98511Clytia hemisphaericaexon
TCONS_00056038-exon-scaffold_266-1575043694:98112..98511TCONS_00056038-exon-scaffold_266-1575043694:98112..98511Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056038-proteinTCONS_00056038-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_266supercontigscaffold_266:98112..98511 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.332442	1.18778	1.53042	0.685627	0.336617	0.858922	0.716423	1.36137	0.313051	0.193882	0.940935	0.669321	0.617674	0	0	0.113189	0	0.285843	0	0.413242	0	0.262795	0	0	2.62253	1.83755	0	0.271819	0.390675	0.21005
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056038 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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