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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055976 ID=TCONS_00055976|Name=TCONS_00055976|organism=Clytia hemisphaerica|type=transcript|length=1579bp
TTATCATTCTTTTCACGACGAGgtGGATCACCATAGACAACATTGGTGGC
GTTGTGATGGTCCTTGTGTTAAACGCCCTCCTTTCTTCGGCATCGTCAGG
CGTGCTATGAATCGAGCGCCCTCTCCGCGCGACCGCTGGTGGAATGACCA
CAAACAAAAATGTGGAGGAGCTTTCACGAAAATCAAGGAGCCAGAGAAAC
CGGTGAAGCAATCTaagaaaagtaaaaagttaGAAGAAACTGGACAAAAG
CTTGGTTCCTCAAGTTCTGAAAGCAACAAAAATAATAAGAATGCAATCAC
AAACTGGTTTCAGAAAACAGATTCTTCAAAGCTTTCAACCTCGTCTAATT
CATCTAACTCCATCAGCATAGATTGTGAAGAAGATCTGAAACCTCCGATA
AACCCGTGGGCAGACGATAGTTACACCAGTAATTCAAAGAACAGTAAACC
AACAAGCAAaactaactctaaccctaagaCAAAAAACAATACTTCGAACC
ATGGAAACCAAAACAAAGGTAAATACCCAGCAGGTTCAACAGCCGTTAAA
GGAGGTGGGTCGCGAACTTCAACTATCACCTCCAAGGGGAAGAACCCTCC
GACCAATGAGAATGACATTTATCGGAGCTCCTCCACAGGTGCTTCAAGTA
ATATCTACGGCTTCAAAATGTCTGCTAATAACAAAGAAGACTCAGCAAAG
CAACCCTTAGCCTCCTTTTCAGGCAACGGCAAACGAATAAGCTCAACAAA
TGACGAACCTTCGGGAAACAGTGgacgagaaaattttttgaaacgatTAG
AAAATAACATGAAAGGGAATACTCAAAGAAAACCCTCAACAAATTCATCA
CAAATTAGTATCCCTCCCTCTTCAAACACTTTCCGTAAACCAAAAGATTC
TGATTTCTCAATGAAAAACCAAAATAAGGACAGAACTCAAAAGAAAGAAA
CCACTGAAAAAACTCCTCCGAACCAACCCTCGTTCTCAAGAAATCCTaca
acaaaccaaaacaagTCTCCCTATACTAACAAACAACCACATAACGCACA
ATCAAATTTAACAAACACTAAACGAAACCTTTCGTCTTCTTCTTCACAAA
ACTCTTCATCAACCTCACCGAAAAAGActaaattttcgaaagaaacGCAC
ATGGTTATTTCTTCAGACGAAGAGGACAATGTACAGCAACAACAAAATCT
TGTGGATTGCCCTGCGTGTCCTATGAGAGTTCCtgaacatcttttgaatg
aacacttGGATGAATGCTTAACTTCTTGACACTTCTACCGATTGAGAAGC
TTCAACCCTACCCAGACCGCAATTTTAACGAGTTTTGTACAGTATGTGTT
GTTGGGACTTCAGTTATTTTCGGACCCTCATTCTTtcgtttcaatgtttt
tttttagtttttttagtcatttttaccAGGGTCATCTTGTATGTAAGATC
ATCGTTGCCTTACTGCAAGTATGACTCGTtatattttgtttcatttttta
ctGTGAATTtagaaaactgaaaatatttattttttatcccAAAATTATAT
CAACGATTTCATGAATCATAGAGCCTCGC Run BLAST on NCBI transcript from alignment at scaffold_266:117022..118716- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055976 ID=TCONS_00055976|Name=TCONS_00055976|organism=Clytia hemisphaerica|type=transcript|length=1695bp|location=Sequence derived from alignment at scaffold_266:117022..118716- (Clytia hemisphaerica)
TTATCATTCTTTTCACGACGAGGTAAGCAAGATATTTGTTTACTATTTGA
TCTGGATGTCATTCGCCCATTAAAACCTATTGCATGAACTTCAGTGTGTT
TTTTTCAAGCATTGCATCGTAAATTTATTTTCTTTTAGGTGGATCACCAT
AGACAACATTGGTGGCGTTGTGATGGTCCTTGTGTTAAACGCCCTCCTTT
CTTCGGCATCGTCAGGCGTGCTATGAATCGAGCGCCCTCTCCGCGCGACC
GCTGGTGGAATGACCACAAACAAAAATGTGGAGGAGCTTTCACGAAAATC
AAGGAGCCAGAGAAACCGGTGAAGCAATCTAAGAAAAGTAAAAAGTTAGA
AGAAACTGGACAAAAGCTTGGTTCCTCAAGTTCTGAAAGCAACAAAAATA
ATAAGAATGCAATCACAAACTGGTTTCAGAAAACAGATTCTTCAAAGCTT
TCAACCTCGTCTAATTCATCTAACTCCATCAGCATAGATTGTGAAGAAGA
TCTGAAACCTCCGATAAACCCGTGGGCAGACGATAGTTACACCAGTAATT
CAAAGAACAGTAAACCAACAAGCAAAACTAACTCTAACCCTAAGACAAAA
AACAATACTTCGAACCATGGAAACCAAAACAAAGGTAAATACCCAGCAGG
TTCAACAGCCGTTAAAGGAGGTGGGTCGCGAACTTCAACTATCACCTCCA
AGGGGAAGAACCCTCCGACCAATGAGAATGACATTTATCGGAGCTCCTCC
ACAGGTGCTTCAAGTAATATCTACGGCTTCAAAATGTCTGCTAATAACAA
AGAAGACTCAGCAAAGCAACCCTTAGCCTCCTTTTCAGGCAACGGCAAAC
GAATAAGCTCAACAAATGACGAACCTTCGGGAAACAGTGGACGAGAAAAT
TTTTTGAAACGATTAGAAAATAACATGAAAGGGAATACTCAAAGAAAACC
CTCAACAAATTCATCACAAATTAGTATCCCTCCCTCTTCAAACACTTTCC
GTAAACCAAAAGATTCTGATTTCTCAATGAAAAACCAAAATAAGGACAGA
ACTCAAAAGAAAGAAACCACTGAAAAAACTCCTCCGAACCAACCCTCGTT
CTCAAGAAATCCTACAACAAACCAAAACAAGTCTCCCTATACTAACAAAC
AACCACATAACGCACAATCAAATTTAACAAACACTAAACGAAACCTTTCG
TCTTCTTCTTCACAAAACTCTTCATCAACCTCACCGAAAAAGACTAAATT
TTCGAAAGAAACGCACATGGTTATTTCTTCAGACGAAGAGGACAATGTAC
AGCAACAACAAAATCTTGTGGATTGCCCTGCGTGTCCTATGAGAGTTCCT
GAACATCTTTTGAATGAACACTTGGATGAATGCTTAACTTCTTGACACTT
CTACCGATTGAGAAGCTTCAACCCTACCCAGACCGCAATTTTAACGAGTT
TTGTACAGTATGTGTTGTTGGGACTTCAGTTATTTTCGGACCCTCATTCT
TTCGTTTCAATGTTTTTTTTTAGTTTTTTTAGTCATTTTTACCAGGGTCA
TCTTGTATGTAAGATCATCGTTGCCTTACTGCAAGTATGACTCGTTATAT
TTTGTTTCATTTTTTACTGTGAATTTAGAAAACTGAAAATATTTATTTTT
TATCCCAAAATTATATCAACGATTTCATGAATCATAGAGCCTCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055976-exon-scaffold_266-1575043694:118695..118716 | TCONS_00055976-exon-scaffold_266-1575043694:118695..118716 | Clytia hemisphaerica | exon |
| TCONS_00055976-exon-scaffold_266-1575043694:117022..118578 | TCONS_00055976-exon-scaffold_266-1575043694:117022..118578 | Clytia hemisphaerica | exon |
| TCONS_00055976-exon-scaffold_266-1510915933:118695..118716 | TCONS_00055976-exon-scaffold_266-1510915933:118695..118716 | Clytia hemisphaerica | exon |
| TCONS_00055976-exon-scaffold_266-1510915933:117022..118578 | TCONS_00055976-exon-scaffold_266-1510915933:117022..118578 | Clytia hemisphaerica | exon |
| TCONS_00055976-exon-scaffold_266-1491911889:118695..118716 | TCONS_00055976-exon-scaffold_266-1491911889:118695..118716 | Clytia hemisphaerica | exon |
| TCONS_00055976-exon-scaffold_266-1491911889:117022..118578 | TCONS_00055976-exon-scaffold_266-1491911889:117022..118578 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_266 | supercontig | scaffold_266:117022..118716 - |
Blast
BLAST of TCONS_00055976 vs. Swiss-Prot (Human)
Match: SPRTN (SprT-like domain-containing protein Spartan OS=Homo sapiens GN=SPRTN PE=1 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 9.823e-23 Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 2
Query: 2 YHSFHDEVDHHRQHWWRCDGPCVKRPPFFGIVRRAMNRAPSPRDRWWNDHKQKCGGAFTKI 184
YH+FHDEVD +R+HWWRC+GPC RPP++G V+RA NR PS D WW +H++ CGG + KI
Sbjct: 152 YHTFHDEVDEYRRHWWRCNGPCQHRPPYYGYVKRATNREPSAHDYWWAEHQKTCGGTYIKI 212
The following BLAST results are available for this feature:
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