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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055985 ID=TCONS_00055985|Name=TCONS_00055985|organism=Clytia hemisphaerica|type=transcript|length=2930bpRun BLAST on NCBI protein sequence of TCONS_00055985-protein >TCONS_00055985-protein ID=TCONS_00055985-protein|Name=TCONS_00055985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=876bp LAKIIKQNQTKAYHTFSFKMVELQAEKPKTKKTAMVLEEVDLPYEEEILRRun BLAST on NCBI transcript from alignment at scaffold_266:138201..162420- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055985 ID=TCONS_00055985|Name=TCONS_00055985|organism=Clytia hemisphaerica|type=transcript|length=24220bp|location=Sequence derived from alignment at scaffold_266:138201..162420- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_266:138201..162420- >TCONS_00055985 ID=TCONS_00055985|Name=TCONS_00055985|organism=Clytia hemisphaerica|type=CDS|length=57882bp|location=Sequence derived from alignment at scaffold_266:138201..162420- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055985 vs. Swiss-Prot (Human)
Match: SYF1 (Pre-mRNA-splicing factor SYF1 OS=Homo sapiens GN=XAB2 PE=1 SV=2) HSP 1 Score: 1101.27 bits (2847), Expect = 0.000e+0 Identity = 528/841 (62.78%), Postives = 660/841 (78.48%), Query Frame = 3
Query: 144 ILRHPYSVKCWMRYVEHKIATGGKGHTVNIIYERALKELPGSYKLWYNYLRLRRLQTKGRCISDPLFEDANNAHERSLVFMHKMPRIWLDYVQFLMDQKFISRTRHVFDRALRALPITQHPRIWPKYLAFIDSVDLPEMAVRVYRRYLKVEPENTEKYIDYLIDIGWLDEAALKLAEIIDDDKFVSKKGKSNHQLWHELCELISKNPEKVKSLKVADIIHGALRRFTDGLGQLWCSLADYYIRGGHFEKARDVYEEAIQTVMTVRDFGEVFDAYAQFEESMISAKMEESQESGLTADGEIDLELRMARFELLMDRRPLLLNSVLLRQNPHNVHEWHKRVQLQEDKPLDVINTYTEAVQTVDPMMASGKPHTLWVEFAKFYEKHEQLKEARIIFEKALKVRYRHVEDLANVWCEYGEMEIRHDNYESALKVLRRATAVPRKKIGTNYHDQKEPVQNRVHKSIKVWSMYADLEESLGTFQSTKAVYNRIIDLRIATPQIILNFAQILEENKYFEESYKAYERGIALFKWPHVFDIWNTYLAKFIQRYGGTKLERARDLFEQCLEKCPGKFAKHLYLMYAKLEEDHGLSRHAMAVYERAVKNVPKNERYELFNIYVKRAAELFGITHTREIYEKAIESLPEENAREVSIRYAALETKLGEIDRARAIYSYGSQMCDPRTTAHFWKAWHDFEVKHGNEDTFREMLRIKRSVQAKYNTQTNFMSAQILATQAT-----------EAAANDMQKLEEQATSLADEASSDKPPPTKG-VLFVRGESQNTEVDEMGGDVPKNPEEIQLXXXXXXXXXXXXXXXXXXXXXXXVPQQKKVPDEVFGGIKRD 2630
I+R+ +SVKCW+RY+E K G +N +YERALK LP SYKLWY YL+ RR Q K RC++DP +ED NN HER+ VFMHKMPR+WLDY QFLMDQ ++ TR FDRALRALPITQH RIWP YL F+ S LPE AVR YRR+LK+ PE+ E+YI+YL LDEAA +LA +++D++FVSK GKSN+QLWHELC+LIS+NP+KV+SL V II G L RFTD LG+LWCSLADYYIR GHFEKARDVYEEAI+TVMTVRDF +VFD+YAQFEESMI+AKME + E G + ++DLELR+ARFE L+ RRPLLLNSVLLRQNPH+VHEWHKRV L + +P ++INTYTEAVQTVDP A+GKPHTLWV FAKFYE + QL +AR+I EKA KV ++ V+DLA+VWC+ GE+E+RH+NY+ AL++LR+ATA+P ++ Y D EPVQNRV+KS+KVWSM ADLEESLGTFQSTKAVY+RI+DLRIATPQI++N+A LEE+KYFEES+KAYERGI+LFKWP+V DIW+TYL KFI RYGG KLERARDLFEQ L+ CP K+AK LYL+YA+LEE+ GL+RHAMAVYERA + V ++Y++FNIY+KRAAE++G+THTR IY+KAIE L +E+ARE+ +R+A +E KLGEIDRARAIYS+ SQ+CDPRTT FW+ W DFEV+HGNEDT +EMLRI+RSVQA YNTQ NFM++Q+L + ++ +DM+ LE++A LA EA D+P + +LFVR ++ E+ E+ V NPEEIQL + + + + D + +Q+ VP VFG +K D
Sbjct: 28 IMRNQFSVKCWLRYIEFK--QGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEALRLLRKATALPARR--AEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIKEMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLAAEAERDQPLRAQSKILFVRSDASREELAELAQQV--NPEEIQLGEDEDEDEMDLEPNEVRL-------EQQSVPAAVFGSLKED 855 The following BLAST results are available for this feature:
BLAST of TCONS_00055985 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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