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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056001 ID=TCONS_00056001|Name=TCONS_00056001|organism=Clytia hemisphaerica|type=transcript|length=698bp
GAACTCACTTTGTTAATGTGCAGTGTGAGCTTATTGCTAAACGTTGTACG
TCGGTTTGTTCAAGTGTATTGAGGAGATACCTTTATGGAATGTTGCTCAA
GCAGGATGAAATTGTTGTTGATTATACAAGAAGTGGTCAGAAATATCGTC
CAAAGATGGTTCGACCTTCAAATGATTTGCCTTCTCTCAACGAGCTGTGG
AGCAGATCTGAAGAAGAGAGACAATCCTTTTTTTTAGACCTTCTAGATAT
CCCATTGGAAGGACGCGGAGCCATCATTTCACCAGCTCATCAATCTTCAT
TGTTTCTCATCACATTGCAGTATTTCAAACAGGTTCACTCAACCTCTGAA
GAACAAACCAATACATTCCTTGAGATGCACTTGATATTGAGGAATGGTAA
CAGATGTTGTGATGTACCACACCTTGATCAAGTTTTGTTACATGTTTACA
GTTCTTTTCATACAGTGTTTTATTACATCAACATGATCAATACCCTGCTT
GGTGAACCTTTCGTTACCCCAAAGGCCTCACAGTTGATGAGTGGGAGTAT
GTTCCAAAGCCTTTGCCAACGAGGCAACAAAGACTTCGAAGCTAACCATG
CAAAAGAAGATCTTACTGACTTGGAGAcatatcaaaatttcattttaccA
AATATGATGGATAAAGTGCAACCTAGGTCATCTTCCAAGAAAAATCAC Run BLAST on NCBI protein sequence of TCONS_00056001-protein >TCONS_00056001-protein ID=TCONS_00056001-protein|Name=TCONS_00056001-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
THFVNVQCELIAKRCTSVCSSVLRRYLYGMLLKQDEIVVDYTRSGQKYRP
KMVRPSNDLPSLNELWSRSEEERQSFFLDLLDIPLEGRGAIISPAHQSSL
FLITLQYFKQVHSTSEEQTNTFLEMHLILRNGNRCCDVPHLDQVLLHVYS
SFHTVFYYINMINTLLGEPFVTPKASQLMSGSMFQSLCQRGNKDFEANHA
KEDLTDLETYQNFILPNMMDKVQPRSSSKKNH Run BLAST on NCBI transcript from alignment at scaffold_266:259751..260557- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056001 ID=TCONS_00056001|Name=TCONS_00056001|organism=Clytia hemisphaerica|type=transcript|length=807bp|location=Sequence derived from alignment at scaffold_266:259751..260557- (Clytia hemisphaerica)
GAACTCACTTTGTTAATGTGCAGTGTGAGCTTATTGCTAAACGTTGTACG
TCGGTTTGTTCAAGTGTATTGAGGAGATACCTTTATGGAATGTTGCTCAA
GCAGGATGAAATTGTTGTTGATTATACAAGAAGTGGTCAGAAATATCGTC
CAAAGATGGTTCGACCTTCAAATGATTTGCCTTCTCTCAACGAGCTGTGG
AGCAGATCTGAAGAAGAGAGACAATCCTTTTTTTTAGACCTTCTAGATAT
CCCATTGGAAGGACGCGGAGCCATCATTTCACCAGCTCATCAATCTTCAT
TGTTTCTCATCACATTGCAGTATTTCAAACAGGTTCACTCAACCTCTGAA
GAACAAACCAATACATTCCTTGAGATGCACTTGATATTGAGGAATGGTAA
CAGATGTTGTGATGTACCACACCTTGATCAAGTTTTGTTACATGTTTACA
GTTCTTTTCATACAGTGTTTTATTACATCAACATGATCAATACCCTGCTT
GGTGAACCTTTCGTTACCCCAAAGGCCTCACAGTTGATGAGTGGGAGTAT
GTTCCAAAGCCTTTGCCAACGAGGTGAGTTTTTCAGATAAAATACAATAC
TTCATCCATGTTTTGTCATTCTTTAGTTCATGTCCAGTTTTATTCATTCA
ATCGAATCGTTTATTTTCACCTTTCATACTAGGCAACAAAGACTTCGAAG
CTAACCATGCAAAAGAAGATCTTACTGACTTGGAGACATATCAAAATTTC
ATTTTACCAAATATGATGGATAAAGTGCAACCTAGGTCATCTTCCAAGAA
AAATCAC Coding sequence (CDS) from alignment at scaffold_266:259751..260557- >TCONS_00056001 ID=TCONS_00056001|Name=TCONS_00056001|organism=Clytia hemisphaerica|type=CDS|length=1392bp|location=Sequence derived from alignment at scaffold_266:259751..260557- (Clytia hemisphaerica)
GCAACAAAGACTTCGAAGCTAACCATGCAAAAGAAGATCTTACTGACTTG
GAGACATATCAAAATTTCATTTTACCAAATATGATGGATAAAGTGCAACC
TAGGTCATCTTCCAAGAAAAATCACACTCACTTTGTTAATGTGCAGTGTG
AGCTTATTGCTAAACGTTGTACGTCGGTTTGTTCAAGTGTATTGAGGAGA
TACCTTTATGGAATGTTGCTCAAGCAGGATGAAATTGTTGTTGATTATAC
AAGAAGTGGTCAGAAATATCGTCCAAAGATGGTTCGACCTTCAAATGATT
TGCCTTCTCTCAACGAGCTGTGGAGCAGATCTGAAGAAGAGAGACAATCC
TTTTTTTTAGACCTTCTAGATATCCCATTGGAAGGACGCGGAGCCATCAT
TTCACCAGCTCATCAATCTTCATTGTTTCTCATCACATTGCAGTATTTCA
AACAGGTTCACTCAACCTCTGAAGAACAAACCAATACATTCCTTGAGATG
CACTTGATATTGAGGAATGGTAACAGATGTTGTGATGTACCACACCTTGA
TCAAGTTTTGTTACATGTTTACAGTTCTTTTCATACAGTGTTTTATTACA
TCAACATGATCAATACCCTGCTTGGTGAACCTTTCGTTACCCCAAAGGCC
TCACAGTTGATGAGTGGGAGTATGTTCCAAAGCCTTTGCCAACGAGGCAA
CAAAGACTTCGAAGCTAACCATGCAAAAGAAGATCTTACTGACTTGGAGA
CATATCAAAATTTCATTTTACCAAATATGATGGATAAAGTGCAACCTAGG
TCATCTTCCAAGAAAAATCACACTCACTTTGTTAATGTGCAGTGTGAGCT
TATTGCTAAACGTTGTACGTCGGTTTGTTCAAGTGTATTGAGGAGATACC
TTTATGGAATGTTGCTCAAGCAGGATGAAATTGTTGTTGATTATACAAGA
AGTGGTCAGAAATATCGTCCAAAGATGGTTCGACCTTCAAATGATTTGCC
TTCTCTCAACGAGCTGTGGAGCAGATCTGAAGAAGAGAGACAATCCTTTT
TTTTAGACCTTCTAGATATCCCATTGGAAGGACGCGGAGCCATCATTTCA
CCAGCTCATCAATCTTCATTGTTTCTCATCACATTGCAGTATTTCAAACA
GGTTCACTCAACCTCTGAAGAACAAACCAATACATTCCTTGAGATGCACT
TGATATTGAGGAATGGTAACAGATGTTGTGATGTACCACACCTTGATCAA
GTTTTGTTACATGTTTACAGTTCTTTTCATACAGTGTTTTATTACATCAA
CATGATCAATACCCTGCTTGGTGAACCTTTCGTTACCCCAAAGGCCTCAC
AGTTGATGAGTGGGAGTATGTTCCAAAGCCTTTGCCAACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056001-exon-scaffold_266-1575043694:259985..260557 | TCONS_00056001-exon-scaffold_266-1575043694:259985..260557 | Clytia hemisphaerica | exon |
| TCONS_00056001-exon-scaffold_266-1575043694:259751..259875 | TCONS_00056001-exon-scaffold_266-1575043694:259751..259875 | Clytia hemisphaerica | exon |
| TCONS_00056001-exon-scaffold_266-1510915933:259985..260557 | TCONS_00056001-exon-scaffold_266-1510915933:259985..260557 | Clytia hemisphaerica | exon |
| TCONS_00056001-exon-scaffold_266-1510915933:259751..259875 | TCONS_00056001-exon-scaffold_266-1510915933:259751..259875 | Clytia hemisphaerica | exon |
| TCONS_00056001-exon-scaffold_266-1491911889:259985..260557 | TCONS_00056001-exon-scaffold_266-1491911889:259985..260557 | Clytia hemisphaerica | exon |
| TCONS_00056001-exon-scaffold_266-1491911889:259751..259875 | TCONS_00056001-exon-scaffold_266-1491911889:259751..259875 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_266 | supercontig | scaffold_266:259751..260557 - |
Blast
The following BLAST results are available for this feature:
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