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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056005 ID=TCONS_00056005|Name=TCONS_00056005|organism=Clytia hemisphaerica|type=transcript|length=2788bp
gcaaaaatggTCTTCTAAAGTTTGCATGTCTGCACAATATTGCAAAGTAT
TTAACCTTTTTAGGTTGAATGATTCCGTCTGAAATTTtctcttcaatttt
catccttttttgaatTGGTCAATCAAAttcctcttctttcttttcagcTC
TAAtatcagaaaatttgaaatggatTGGGTGAAATTTTTAGGTTTCTTAG
GATTGTTGCTTGAAACTTTAACCCTGGTTGTAGCTAACAAAAAGCAGGAT
GAAGATACAGGCGTATTTTCTATGCATACAAGCCACTCTTTACCAGTTTA
TCATGCATTTGGAACAGAAGATGAGTTCACATTGAGAAGTaatattttgt
tcaaaacaTCCAAAGTAACAACTGCTGTTTTAAACAAGGAAACAAGGCTA
TCCCCAACCGAAGTtgacaaattgaaaaaattagttgATGAAGATGGGTT
ctattttattagaacacctacaAAATTGAAAACCAATCTGCATGATGAGA
CAAACACACCTGATGAGAGATTTGTATCCACTTTTGTACCTGCTTGTTAT
TTGTATGGTTCATCACTCAACGAGCTCATCAAAGTAGCCGTCGACCACAT
GGGAAATGTGATTGGATTGAGTATTGTTTCACCACGACATGATTGTGCAG
TTGCTCAGTTGAAGGATATTGATGATGATGTCACCTTTAATTCAACTGTC
CTTATCAATCACCAGgtACCAGGAGCAGTTCCAGATACGCAATCCTTCAT
CAAGAAAATAGAGAACGACAAAAAAGAACAAGCAGATGGGAAGGGCAAAG
ATAACCGTTCATTTTTTGCTAAATACTGGATGTACATCGTCCCTGTTGTT
TTAGTTTTAATGTTGAGTTCACAAGCTGAACCTGAGGGGGAATAAGAACT
TCTGATGTGTAATTTAGgatgatttttggaatttatcgTACTTATTTAGT
GAGCCAGGAGACATTTATTTTTGCCATGATAAAGATAGTATAACGTAGGA
CTCTTTTTGAATTATGATAAATCCAGGATAAGCGTTCCACACNTTTGCCA
TGATAAAGATAGTATAACGTAGGACTCTTTCTGAATTATGATAAATCCTG
GATACAAGCGTTCCACATGATATCAGGCATAACCAGTTTTTGGATGATAA
AAACTATTGCTCGGTCTTTTTGGTAAAGAAAATGAATTACAAGGCCTttg
agattttgattttttattgaccGTAGGATTATATTTGTAACATTCATATT
ACTATTCATTGTCAAGATAAAGCCATTCGTTTTTTTACTGTTCTTGTTCT
GAAAACCGCATGATTATTTACATTAGTCACACTTCAATCAATAGATGGAG
ACTAACAATAATATAATTCCCACAGTTTATGTTGGTGACTTTTTGAAATC
ATGTTTGCGACTACTTTTaataatctttgtttttttttcttcagaaacgT
AACTAtagaaaatacaataaaaatgagACATTTAGTTGCTAGGGACGCTA
TTAGAGCATTTCAACATGTATTGAGGAAATCAAACCAACTAGCTCACTCA
CAAAGGGTACAAATTAATGCAATTCAGAGAATGGCACCTGCTTTGAATCA
CTTGACACACAGAACATTTTCTACCGACACTGATTGGAATGATGacaaat
tcaatgaaattgtaAAGGATAACAAaatgattgtgtttatgaaagGGACA
CCAGATGCTCCCATGTGTGGATTCAGTAAATATGTTATTCAAATTCTGAC
CATGCATGGGTGTAAGGATTTCACCACTTTTAATGTATTAGATGATGAAG
TTTTACGCTCCCGTGTGAAAGAGTTTTCAAACTGGCCCACTATTCCTCAA
GTGTATATTGATGGAGAGTTTGTTggaggttttgatattttacttCAAAT
GCACCAAAATGGTGAACTTATTGAAGAACTGGATAAAATTGGACATCGCT
CGGTTTTGATTGACGCtgaaaatgaatgaatgaatgtgTCTCTTTTTTAA
AGAATGAGTGAATGAATATGAGAAAGGAAACTACCTGTAATTTATGCTTC
AAAGGAAAACACTAGTTTTTCAGAAAGACTTTTATAGTACATAgtgtttt
aataaaaattcgGTCTCTTACGAAATTCATTACTTCTATTAACTTTATTT
TAGTTACcttcccttttcaaaaattcatgaaaagtTTAAGGTATTTGGAC
acactttttcagatttttttgtcaaaaagttttttttagcccaagtagaa
gaaaattttggtaaaatcacgaacttaaaatcttgctttgatccagagtt
ataaccaaagagaaggtccagctgacgtttTTTCTCACATCTATTGAATA
GTaagattttgatgaattttactGATTACTCAATTAAACAGCAATTATCT
CTCTAAAATTGATGTCACCTTTAATTCAGCTGTCCTTATCAATCACCAAT
CACCTTTCAAATCGGTgtagagaaaaaataaaattttaccatacaatact
acttttaacgaagttaaagtcgTCACCCATAGTATTTAGCTACGACTTCA
ATCCCAAAAGATCcaacttaaaaagtgtctttggattttatttctaatcg
agtttttcatcctcattttacagataactgaaaaattgcatttaaattaa
cttttttctcaataatttaaaaaaattttagatttgacGAGTTGAAGTCA
ATCTAAAGAAAAATCccaaaaagcttttttagtTTAATCTATTGGGAACT
TAGTACCGAAATTATTTTTCCagaattcaaaagctatg Run BLAST on NCBI protein sequence of TCONS_00056005-protein >TCONS_00056005-protein ID=TCONS_00056005-protein|Name=TCONS_00056005-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
MDWVKFLGFLGLLLETLTLVVANKKQDEDTGVFSMHTSHSLPVYHAFGTE
DEFTLRSNILFKTSKVTTAVLNKETRLSPTEVDKLKKLVDEDGFYFIRTP
TKLKTNLHDETNTPDERFVSTFVPACYLYGSSLNELIKVAVDHMGNVIGL
SIVSPRHDCAVAQLKDIDDDVTFNSTVLINHQVPGAVPDTQSFIKKIEND
KKEQADGKGKDNRSFFAKYWMYIVPVVLVLMLSSQAEPEGE Run BLAST on NCBI transcript from alignment at scaffold_266:302969..306100- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056005 ID=TCONS_00056005|Name=TCONS_00056005|organism=Clytia hemisphaerica|type=transcript|length=3132bp|location=Sequence derived from alignment at scaffold_266:302969..306100- (Clytia hemisphaerica)
GCAAAAATGGTCTTCTAAAGTTTGCATGTCTGCACAATATTGCAAAGTAT
TTAACCTTTTTAGGTTGAATGATTCCGTCTGAAATTTTCTCTTCAATTTT
CATCCTTTTTTGAATTGGTCAATCAAATTCCTCTTCTTTCTTTTCAGCTC
TAATATCAGAAAATTTGAAATGGATTGGGTGAAATTTTTAGGTTTCTTAG
GATTGTTGCTTGAAACTTTAACCCTGGTTGTAGCTAACAAAAAGCAGGAT
GAAGATACAGGCGTATTTTCTATGCATACAAGCCACTCTTTACCAGTTTA
TCATGCATTTGGAACAGAAGATGAGTTCACATTGAGAAGTAATATTTTGT
TCAAAACATCCAAAGTAACAACTGCTGTTTTAAACAAGGAAACAAGGCTA
TCCCCAACCGAAGTTGACAAATTGAAAAAATTAGTTGATGAAGATGGGTT
CTATTTTATTAGAACACCTACAAAATTGAAAACCAATCTGCATGATGAGA
CAAACACACCTGATGAGAGATTTGTATCCACTTTTGTACCTGCTTGTTAT
TTGTATGGTTCATCACTCAACGAGCTCATCAAAGTAGCCGTCGACCACAT
GGGAAATGTGATTGGATTGAGTATTGTTTCACCACGACATGATTGTGCAG
TTGCTCAGTTGAAGGATATTGATGATGATGTCACCTTTAATTCAACTGTC
CTTATCAATCACCAGGTTAGTCCCATACTTTTGCTGTGATGACATTTTTC
CATCGCATTACTGAAAAAACTCTAAGATTGACCTAATTCTGATGTATTGA
TAGTTTCATTGAAAAGGAATTGATGAATACACTATGTCAGTATGTATATG
AAATTTTCTATATGAAATATAAAAGTCAATGTTACTGAACTTTACTAGCA
AGCGTCAATACCTAATGGACATTAAATACCTATTTCAAGAAAATTGATAA
TCTAAAAGAACATAAAATAAAGAAATAAAAGAAAAATCAAATTAGAAAGT
GAATTTAATTTAGAAACTGTAAGATAAGTTATCTAAAAAATTGTTCTTTT
TTTCTTCAGGTACCAGGAGCAGTTCCAGATACGCAATCCTTCATCAAGAA
AATAGAGAACGACAAAAAAGAACAAGCAGATGGGAAGGGCAAAGATAACC
GTTCATTTTTTGCTAAATACTGGATGTACATCGTCCCTGTTGTTTTAGTT
TTAATGTTGAGTTCACAAGCTGAACCTGAGGGGGAATAAGAACTTCTGAT
GTGTAATTTAGGATGATTTTTGGAATTTATCGTACTTATTTAGTGAGCCA
GGAGACATTTATTTTTGCCATGATAAAGATAGTATAACGTAGGACTCTTT
TTGAATTATGATAAATCCAGGATAAGCGTTCCACACNTTTGCCATGATAA
AGATAGTATAACGTAGGACTCTTTCTGAATTATGATAAATCCTGGATACA
AGCGTTCCACATGATATCAGGCATAACCAGTTTTTGGATGATAAAAACTA
TTGCTCGGTCTTTTTGGTAAAGAAAATGAATTACAAGGCCTTTGAGATTT
TGATTTTTTATTGACCGTAGGATTATATTTGTAACATTCATATTACTATT
CATTGTCAAGATAAAGCCATTCGTTTTTTTACTGTTCTTGTTCTGAAAAC
CGCATGATTATTTACATTAGTCACACTTCAATCAATAGATGGAGACTAAC
AATAATATAATTCCCACAGTTTATGTTGGTGACTTTTTGAAATCATGTTT
GCGACTACTTTTAATAATCTTTGTTTTTTTTTCTTCAGAAACGTAACTAT
AGAAAATACAATAAAAATGAGACATTTAGTTGCTAGGGACGCTATTAGAG
CATTTCAACATGTATTGAGGAAATCAAACCAACTAGCTCACTCACAAAGG
GTACAAATTAATGCAATTCAGAGAATGGCACCTGCTTTGAATCACTTGAC
ACACAGAACATTTTCTACCGACACTGATTGGAATGATGACAAATTCAATG
AAATTGTAAAGGATAACAAAATGATTGTGTTTATGAAAGGGACACCAGAT
GCTCCCATGTGTGGATTCAGTAAATATGTTATTCAAATTCTGACCATGCA
TGGGTGTAAGGATTTCACCACTTTTAATGTATTAGATGATGAAGTTTTAC
GCTCCCGTGTGAAAGAGTTTTCAAACTGGCCCACTATTCCTCAAGTGTAT
ATTGATGGAGAGTTTGTTGGAGGTTTTGATATTTTACTTCAAATGCACCA
AAATGGTGAACTTATTGAAGAACTGGATAAAATTGGACATCGCTCGGTTT
TGATTGACGCTGAAAATGAATGAATGAATGTGTCTCTTTTTTAAAGAATG
AGTGAATGAATATGAGAAAGGAAACTACCTGTAATTTATGCTTCAAAGGA
AAACACTAGTTTTTCAGAAAGACTTTTATAGTACATAGTGTTTTAATAAA
AATTCGGTCTCTTACGAAATTCATTACTTCTATTAACTTTATTTTAGTTA
CCTTCCCTTTTCAAAAATTCATGAAAAGTTTAAGGTATTTGGACACACTT
TTTCAGATTTTTTTGTCAAAAAGTTTTTTTTAGCCCAAGTAGAAGAAAAT
TTTGGTAAAATCACGAACTTAAAATCTTGCTTTGATCCAGAGTTATAACC
AAAGAGAAGGTCCAGCTGACGTTTTTTCTCACATCTATTGAATAGTAAGA
TTTTGATGAATTTTACTGATTACTCAATTAAACAGCAATTATCTCTCTAA
AATTGATGTCACCTTTAATTCAGCTGTCCTTATCAATCACCAATCACCTT
TCAAATCGGTGTAGAGAAAAAATAAAATTTTACCATACAATACTACTTTT
AACGAAGTTAAAGTCGTCACCCATAGTATTTAGCTACGACTTCAATCCCA
AAAGATCCAACTTAAAAAGTGTCTTTGGATTTTATTTCTAATCGAGTTTT
TCATCCTCATTTTACAGATAACTGAAAAATTGCATTTAAATTAACTTTTT
TCTCAATAATTTAAAAAAATTTTAGATTTGACGAGTTGAAGTCAATCTAA
AGAAAAATCCCAAAAAGCTTTTTTAGTTTAATCTATTGGGAACTTAGTAC
CGAAATTATTTTTCCAGAATTCAAAAGCTATG Coding sequence (CDS) from alignment at scaffold_266:302969..306100- >TCONS_00056005 ID=TCONS_00056005|Name=TCONS_00056005|organism=Clytia hemisphaerica|type=CDS|length=1452bp|location=Sequence derived from alignment at scaffold_266:302969..306100- (Clytia hemisphaerica)
GTACCAGGAGCAGTTCCAGATACGCAATCCTTCATCAAGAAAATAGAGAA
CGACAAAAAAGAACAAGCAGATGGGAAGGGCAAAGATAACCGTTCATTTT
TTGCTAAATACTGGATGTACATCGTCCCTGTTGTTTTAGTTTTAATGTTG
AGTTCACAAGCTGAACCTGAGGGGGAATAAATGGATTGGGTGAAATTTTT
AGGTTTCTTAGGATTGTTGCTTGAAACTTTAACCCTGGTTGTAGCTAACA
AAAAGCAGGATGAAGATACAGGCGTATTTTCTATGCATACAAGCCACTCT
TTACCAGTTTATCATGCATTTGGAACAGAAGATGAGTTCACATTGAGAAG
TAATATTTTGTTCAAAACATCCAAAGTAACAACTGCTGTTTTAAACAAGG
AAACAAGGCTATCCCCAACCGAAGTTGACAAATTGAAAAAATTAGTTGAT
GAAGATGGGTTCTATTTTATTAGAACACCTACAAAATTGAAAACCAATCT
GCATGATGAGACAAACACACCTGATGAGAGATTTGTATCCACTTTTGTAC
CTGCTTGTTATTTGTATGGTTCATCACTCAACGAGCTCATCAAAGTAGCC
GTCGACCACATGGGAAATGTGATTGGATTGAGTATTGTTTCACCACGACA
TGATTGTGCAGTTGCTCAGTTGAAGGATATTGATGATGATGTCACCTTTA
ATTCAACTGTCCTTATCAATCACCAGGTACCAGGAGCAGTTCCAGATACG
CAATCCTTCATCAAGAAAATAGAGAACGACAAAAAAGAACAAGCAGATGG
GAAGGGCAAAGATAACCGTTCATTTTTTGCTAAATACTGGATGTACATCG
TCCCTGTTGTTTTAGTTTTAATGTTGAGTTCACAAGCTGAACCTGAGGGG
GAATAAATGGATTGGGTGAAATTTTTAGGTTTCTTAGGATTGTTGCTTGA
AACTTTAACCCTGGTTGTAGCTAACAAAAAGCAGGATGAAGATACAGGCG
TATTTTCTATGCATACAAGCCACTCTTTACCAGTTTATCATGCATTTGGA
ACAGAAGATGAGTTCACATTGAGAAGTAATATTTTGTTCAAAACATCCAA
AGTAACAACTGCTGTTTTAAACAAGGAAACAAGGCTATCCCCAACCGAAG
TTGACAAATTGAAAAAATTAGTTGATGAAGATGGGTTCTATTTTATTAGA
ACACCTACAAAATTGAAAACCAATCTGCATGATGAGACAAACACACCTGA
TGAGAGATTTGTATCCACTTTTGTACCTGCTTGTTATTTGTATGGTTCAT
CACTCAACGAGCTCATCAAAGTAGCCGTCGACCACATGGGAAATGTGATT
GGATTGAGTATTGTTTCACCACGACATGATTGTGCAGTTGCTCAGTTGAA
GGATATTGATGATGATGTCACCTTTAATTCAACTGTCCTTATCAATCACC
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056005-exon-scaffold_266-1575043694:305386..306100 | TCONS_00056005-exon-scaffold_266-1575043694:305386..306100 | Clytia hemisphaerica | exon |
| TCONS_00056005-exon-scaffold_266-1575043694:302969..305041 | TCONS_00056005-exon-scaffold_266-1575043694:302969..305041 | Clytia hemisphaerica | exon |
| TCONS_00056005-exon-scaffold_266-1510915933:305386..306100 | TCONS_00056005-exon-scaffold_266-1510915933:305386..306100 | Clytia hemisphaerica | exon |
| TCONS_00056005-exon-scaffold_266-1510915933:302969..305041 | TCONS_00056005-exon-scaffold_266-1510915933:302969..305041 | Clytia hemisphaerica | exon |
| TCONS_00056005-exon-scaffold_266-1491911889:305386..306100 | TCONS_00056005-exon-scaffold_266-1491911889:305386..306100 | Clytia hemisphaerica | exon |
| TCONS_00056005-exon-scaffold_266-1491911889:302969..305041 | TCONS_00056005-exon-scaffold_266-1491911889:302969..305041 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_266 | supercontig | scaffold_266:302969..306100 - |
Blast
BLAST of TCONS_00056005 vs. Swiss-Prot (Human)
Match: GLRX5 (Glutaredoxin-related protein 5, mitochondrial OS=Homo sapiens GN=GLRX5 PE=1 SV=2) HSP 1 Score: 153.68 bits (387), Expect = 2.836e-42 Identity = 64/111 (57.66%), Postives = 89/111 (80.18%), Query Frame = 3
Query: 1644 DKFNEIVKDNKMIVFMKGTPDAPMCGFSKYVIQILTMHGCKDFTTFNVLDDEVLRSRVKEFSNWPTIPQVYIDGEFVGGFDILLQMHQNGELIEELDKIGHRSVLIDAENE 1976
++ + +VK +K++VF+KGTP+ P CGFS V+QIL +HG +D+ +NVLDD LR +K++SNWPTIPQVY++GEFVGG DILLQMHQNG+L+EEL K+G S L+D + +
Sbjct: 43 EQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELKKLGIHSALLDEKKD 153
The following BLAST results are available for this feature:
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