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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055938 ID=TCONS_00055938|Name=TCONS_00055938|organism=Clytia hemisphaerica|type=transcript|length=2663bpRun BLAST on NCBI protein sequence of TCONS_00055938-protein >TCONS_00055938-protein ID=TCONS_00055938-protein|Name=TCONS_00055938-protein|organism=Clytia hemisphaerica|type=polypeptide|length=640bp MDFQFELNFDDVFEGTDHIKNEDHIIEDTTFAEETLNISNEDIKIKEPPLRun BLAST on NCBI transcript from alignment at scaffold_266:440608..463430+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055938 ID=TCONS_00055938|Name=TCONS_00055938|organism=Clytia hemisphaerica|type=transcript|length=22823bp|location=Sequence derived from alignment at scaffold_266:440608..463430+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_266:440608..463430+ >TCONS_00055938 ID=TCONS_00055938|Name=TCONS_00055938|organism=Clytia hemisphaerica|type=CDS|length=5769bp|location=Sequence derived from alignment at scaffold_266:440608..463430+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055938 vs. Swiss-Prot (Human)
Match: ZN595 (Zinc finger protein 595 OS=Homo sapiens GN=ZNF595 PE=2 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 1.324e-62 Identity = 117/266 (43.98%), Postives = 158/266 (59.40%), Query Frame = 3
Query: 1104 RCKYCNLLFSSQSYLTVHERIHTGEKPYECDVCHKKFNSRHSLNLHKKSHSNERKFECEVCHILLKNKLTYNEHLNIHTGAKPYKCETCGKRFAQSSVYRLHIKIHTGIKQFKCEYCDKSFRQKITMQNHVYAIHTHEKPFPCTLCEKKFHRSDALLMHMRMHQDIKLWQCKICALKFRTTSCLNRHMTTHTKQKRFKCDKCDFEAARKDSLATHYRTHTGERPYKCELCEMTFATLSTRKLHMRRHTGEKPHECPVCKYRFTESS 1901
+C+ C F+ + L+ H+RIHTGEKPY C+ C K F LN HKK H+ E+ ++CE C T NEH IHTG KPYKC+ CGK F S+ H IHTG K +KC+ C K+FRQ ++ H IHT EKP+ C C K F++S +L++H +H + KL++C+ C F +S LN+H HT +K + C++C R LA H R HTGE+PY CE C F ST LH R H+G+KP++C C FT S+
Sbjct: 201 KCEKCGKAFNRSTSLSKHKRIHTGEKPYTCEECGKAFRRSTVLNEHKKIHTGEKPYKCEECGKAFTRSTTLNEHKKIHTGEKPYKCKECGKAFRWSTSMNEHKNIHTGEKPYKCKECGKAFRQSRSLNEHK-NIHTGEKPYTCEKCGKAFNQSSSLIIHRSIHSEQKLYKCEECGKAFTWSSSLNKHKRIHTGEKPYACEECGKAFYRSSHLAKHKRIHTGEKPYTCEECGKAFNQSSTLILHKRIHSGQKPYKCEECGKAFTRST 465 HSP 2 Score: 210.69 bits (535), Expect = 7.694e-58 Identity = 112/267 (41.95%), Postives = 151/267 (56.55%), Query Frame = 3
Query: 1104 RCKYCNLLFSSQSYLTVHERIHTGEKPYECDVCHKKFNSRHSLNLHKKSHSNERKFECEVCHILLKNKLTYNEHLNIHTGAKPYKCETCGKRFAQSSVYRLHIKIHTGIKQFKCEYCDKSFRQKITMQNHVYAIHTHEKPFPCTLCEKKFHRSDALLMHMRMHQDIKLWQCKICALKFRTTSCLNRHMTTHTKQKRFKCDKCDFEAARKDSLATHYRTHTGERPYKCELCEMTFATLSTRKLHMRRHTGEKPHECPVCKYRFTESSG 1904
+C+ C F+ + L H++IHTGEKPY+C C K F S+N HK H+ E+ ++C+ C + + NEH NIHTG KPY CE CGK F QSS +H IH+ K +KCE C K+F ++ H IHT EKP+ C C K F+RS L H R+H K + C+ C F +S L H H+ QK +KC++C R +L H + HTGE+PYKCE C F ++ H HTGEKP++C C F +SSG
Sbjct: 257 KCEECGKAFTRSTTLNEHKKIHTGEKPYKCKECGKAFRWSTSMNEHKNIHTGEKPYKCKECGKAFRQSRSLNEHKNIHTGEKPYTCEKCGKAFNQSSSLIIHRSIHSEQKLYKCEECGKAFTWSSSLNKHK-RIHTGEKPYACEECGKAFYRSSHLAKHKRIHTGEKPYTCEECGKAFNQSSTLILHKRIHSGQKPYKCEECGKAFTRSTTLNEHKKIHTGEKPYKCEECGKAFIWSASLNEHKNIHTGEKPYKCKECGKAFNQSSG 522 HSP 3 Score: 199.134 bits (505), Expect = 7.173e-54 Identity = 107/266 (40.23%), Postives = 145/266 (54.51%), Query Frame = 3
Query: 1104 RCKYCNLLFSSQSYLTVHERIHTGEKPYECDVCHKKFNSRHSLNLHKKSHSNERKFECEVCHILLKNKLTYNEHLNIHTGAKPYKCETCGKRFAQSSVYRLHIKIHTGIKQFKCEYCDKSFRQKITMQNHVYAIHTHEKPFPCTLCEKKFHRSDALLMHMRMHQDIKLWQCKICALKFRTTSCLNRHMTTHTKQKRFKCDKCDFEAARKDSLATHYRTHTGERPYKCELCEMTFATLSTRKLHMRRHTGEKPHECPVCKYRFTESS 1901
+C+ C F+ S L H+RIHTGEKPY C+ C K F L HK+ H+ E+ + CE C T H IH+G KPYKCE CGK F +S+ H KIHTG K +KCE C K+F ++ H IHT EKP+ C C K F++S L++H +H + KL++C+ C F ++ LN H H+ +K +KC +C +L H R HTGE+P+ CE C F S+ H HTGEK ++C C F S
Sbjct: 369 KCEECGKAFTWSSSLNKHKRIHTGEKPYACEECGKAFYRSSHLAKHKRIHTGEKPYTCEECGKAFNQSSTLILHKRIHSGQKPYKCEECGKAFTRSTTLNEHKKIHTGEKPYKCEECGKAFIWSASLNEHK-NIHTGEKPYKCKECGKAFNQSSGLIIHRSIHSEQKLYKCEECGKAFTRSTALNEHKKIHSGEKPYKCKECGKAYNLSSTLTKHKRIHTGEKPFTCEECGKAFNWSSSLTKHKIIHTGEKSYKCEECGKAFNRPS 633 HSP 4 Score: 194.512 bits (493), Expect = 2.396e-52 Identity = 107/248 (43.15%), Postives = 138/248 (55.65%), Query Frame = 3
Query: 1107 CKYCNLLFSSQSYLTVHERIHTGEKPYECDVCHKKFNSRHSLNLHKKSHSNERKFECEVCHILLKNKLTYNEHLNIHTGAKPYKCETCGKRFAQSSVYRLHIKIHTGIKQFKCEYCDKSFRQKITMQNHVYAIHTHEKPFPCTLCEKKFHRSDALLMHMRMHQDIKLWQCKICALKFRTTSCLNRHMTTHTKQKRFKCDKCDFEAARKDSLATHYRTHTGERPYKCELCEMTFATLSTRKLHMRRHTG 1850
C+ C F S+L H+RIHTGEKPY C+ C K FN +L LHK+ HS ++ ++CE C T NEH IHTG KPYKCE CGK F S+ H IHTG K +KC+ C K+F Q + H +IH+ +K + C C K F RS AL H ++H K ++CK C + +S L +H HT +K F C++C SL H HTGE+ YKCE C F ST +H R HTG
Sbjct: 398 CEECGKAFYRSSHLAKHKRIHTGEKPYTCEECGKAFNQSSTLILHKRIHSGQKPYKCEECGKAFTRSTTLNEHKKIHTGEKPYKCEECGKAFIWSASLNEHKNIHTGEKPYKCKECGKAFNQSSGLIIH-RSIHSEQKLYKCEECGKAFTRSTALNEHKKIHSGEKPYKCKECGKAYNLSSTLTKHKRIHTGEKPFTCEECGKAFNWSSSLTKHKIIHTGEKSYKCEECGKAFNRPSTLTVHKRIHTG 644 HSP 5 Score: 163.696 bits (413), Expect = 5.188e-42 Identity = 96/245 (39.18%), Postives = 132/245 (53.88%), Query Frame = 3
Query: 1170 TGEKPYECDVCHKKFNSRHSLNLHKKSHSNERKFECEVC-HILLKNKLTYNEHLNIHTGAKPYKCETCGKRFAQSSVYRLHIKIHTGIKQFKCEYCDKSFRQKITMQNHVYAIHTHEKPFPCTLCEKKFHRSDALLMHMRMHQDIKLWQCKICALKFRTTSCLNRHMTTHTKQKRFKCDKCDFEAARKDSLATHYRTHTGERPYKCELCEMTFATLSTRKLHMRRHTGEKPHECPVCKYRFTESS 1901
T K ++C+ C K F+ + N HK H+ E+ F+C C + LT +H IH G KPYKCE CGK F +S+ H +IHTG K + CE C K+FR+ + H IHT EKP+ C C K F RS L H ++H K ++CK C FR ++ +N H HT +K +KC +C + SL H HTGE+PY CE C F S+ +H H+ +K ++C C FT SS
Sbjct: 140 TQSKIFQCNTCVKVFSKFSNSNKHKIRHTGEKPFKCTECGRSFYMSHLT--QHTGIHAGEKPYKCEKCGKAFNRSTSLSKHKRIHTGEKPYTCEECGKAFRRSTVLNEHK-KIHTGEKPYKCEECGKAFTRSTTLNEHKKIHTGEKPYKCKECGKAFRWSTSMNEHKNIHTGEKPYKCKECGKAFRQSRSLNEHKNIHTGEKPYTCEKCGKAFNQSSSLIIHRSIHSEQKLYKCEECGKAFTWSS 381 HSP 6 Score: 142.124 bits (357), Expect = 6.641e-35 Identity = 81/218 (37.16%), Postives = 112/218 (51.38%), Query Frame = 3
Query: 1248 SHSNERKFECEVCHILLKNKLTYNEHLNIHTGAKPYKCETCGKRFAQSSVYRLHIKIHTGIKQFKCEYCDKSFRQKITMQNHVYAIHTHEKPFPCTLCEKKFHRSDALLMHMRMHQDIKLWQCKICALKFRTTSCLNRHMTTHTKQKRFKCDKCDFEAARKDSLATHYRTHTGERPYKCELCEMTFATLSTRKLHMRRHTGEKPHECPVCKYRFTESS 1901
S + + F+C C + N+H HTG KP+KC CG+ F S + + H IH G K +KCE C K+F + ++ H IHT EKP+ C C K F RS L H ++H K ++C+ C F ++ LN H HT +K +KC +C S+ H HTGE+PYKC+ C F + H HTGEKP+ C C F +SS
Sbjct: 138 STTQSKIFQCNTCVKVFSKFSNSNKHKIRHTGEKPFKCTECGRSFYMSHLTQ-HTGIHAGEKPYKCEKCGKAFNRSTSLSKHK-RIHTGEKPYTCEECGKAFRRSTVLNEHKKIHTGEKPYKCEECGKAFTRSTTLNEHKKIHTGEKPYKCKECGKAFRWSTSMNEHKNIHTGEKPYKCKECGKAFRQSRSLNEHKNIHTGEKPYTCEKCGKAFNQSS 353 The following BLAST results are available for this feature:
BLAST of TCONS_00055938 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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