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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056028 ID=TCONS_00056028|Name=TCONS_00056028|organism=Clytia hemisphaerica|type=transcript|length=2208bpRun BLAST on NCBI protein sequence of TCONS_00056028-protein >TCONS_00056028-protein ID=TCONS_00056028-protein|Name=TCONS_00056028-protein|organism=Clytia hemisphaerica|type=polypeptide|length=515bp MSQNRSNLSERTRLLQDTTSGESEDEFSVPTAQILDPNSTGRMDVVQSDNRun BLAST on NCBI transcript from alignment at scaffold_266:519361..529260- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056028 ID=TCONS_00056028|Name=TCONS_00056028|organism=Clytia hemisphaerica|type=transcript|length=9900bp|location=Sequence derived from alignment at scaffold_266:519361..529260- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_266:519361..529260- >TCONS_00056028 ID=TCONS_00056028|Name=TCONS_00056028|organism=Clytia hemisphaerica|type=CDS|length=15480bp|location=Sequence derived from alignment at scaffold_266:519361..529260- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056028 vs. Swiss-Prot (Human)
Match: PSN2 (Presenilin-2 OS=Homo sapiens GN=PSEN2 PE=1 SV=1) HSP 1 Score: 267.7 bits (683), Expect = 1.183e-80 Identity = 147/241 (61.00%), Postives = 191/241 (79.25%), Query Frame = 2
Query: 275 MDEEM-LQYGAKSVLMXXXXXXXXXXXXXXXXXXXXXXXXNQGTYLIYTPFHEEGPISSGEKFGQALANALIVIGVILGMTIFLVLLYKYRCYMIIEGWLVISSLMLLFFFTFIYLQELLRVYNIPMDYMSVALLIWNVGCVGLICIHWKGPLILQQAYLILISALMALVFIKYLPDWTLWFILAAVALYDLFAVLCPKGPLRMLVNLAQERNEQLFPSLVYSSTVMYLINTVT-DDEAQG 991
++EE+ L+YGAK V+ML VPV++C++VVV TI SV +YT G LIYTPF E+ P S G++ ++ N LI+I VI+ MTIFLV+LYKYRCY I GWL++SSLMLLF FT+IYL E+L+ YN+ MDY ++ L +WN G VG++CIHWKGPL+LQQAYLI+ISALMALVFIKYLP+W+ W IL A+++YDL AVLCPKGPLRMLV AQERNE +FP+L+YSS +++ + D +QG
Sbjct: 75 LEEELTLKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYTEKNGQ-LIYTPFTEDTP-SVGQRLLNSVLNTLIMISVIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFGAVGMVCIHWKGPLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQG 313 HSP 2 Score: 106.686 bits (265), Expect = 2.351e-24 Identity = 67/91 (73.63%), Postives = 80/91 (87.91%), Query Frame = 2
Query: 1337 RGVKLGLGDFIFYSVLVGKASA--NKDWNTTIACFFAXXXXXXXXXXXXXXHRKALPALPISIFFGLLFNFATQYLVRPYAETLSVNQVFI 1603
RGVKLGLGDFIFYSVLVGKA+A + DWNTT+ACF AILIGLCLTLLLLA+ +KALPALPISI FGL+F F+T LVRP+ +TL+ +Q++I
Sbjct: 358 RGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACFVAILIGLCLTLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI 448 The following BLAST results are available for this feature:
BLAST of TCONS_00056028 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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