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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055959 ID=TCONS_00055959|Name=TCONS_00055959|organism=Clytia hemisphaerica|type=transcript|length=899bp
GTTTGATACTATAGAAGGAGATACGGGTCAAAGATTGGACCATGCTGCTC
ATCCTTGCTTTTTGGATGGTTCTTCTACAACAAGTTAGCGCTGCTTGTTA
TAACGGACAAGTTGAAGGATCGATCATATCTTTACGTAATGGTGAAACCT
CGGAATGCAAACAGGGTATCGCTACCAAACTTTCTGCGTGGCGTAATACA
AAAAGAGAGGACGTCACTGCAAGTGACACGGAGAAAAACCAATGGCATTT
TGAACTCTTTGGTGATAGCAGACCACTTTCATTTGCGAATCATAGAGGAC
CTTGGATGCGCGCTGGCAGAAAGGATGAACCAAGACCATGGCTTCAGTTC
GGGAGAAGAGATATTAATTTTGAGGTGTTTCACTCCGACAAATACAATGA
ACCACCATTTGCCATGATAAACGGGAAGAGAACTGCTAACTCCAAGAAAA
TTTACTCTGAGAAAATCAATGAACTACCCTTCGCAATCATGAAAGGGAAA
AGAAAAGTTAATTCCAAAAGGCTTCACTCCGTGGAAATCAATGACCTACC
CTTTGTAATGATGAATGGGAAGAGACACGCACGCGACAACATTGTTGGTC
CCAAGGGTATGTCCCTTCAATGGGCAAGTCGCTTTGGTAAAAAAGACAAC
TCGAAGAAAGAACTCAAGATTAAAAACAGTAACAGTAAAAGAAATACAAA
GCCTTGGTTCGACATTGGATCTGAAGGCTCTTCTCTTCAATGGCAAGTTA
ATCCTTTTGGTAAAAGAGGAAAAAGGGATACATTACCGTGGTACGAGCTT
GAAGGAGGAGGCCTCCATTGGAATCGGAGAATTGCCAGTAAGCGTAGCCA
ACGTCTTCAGCTTCCACCACGTGTACCTCACAAACGAGGAGAGAGATAT Run BLAST on NCBI protein sequence of TCONS_00055959-protein >TCONS_00055959-protein ID=TCONS_00055959-protein|Name=TCONS_00055959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp
MLLILAFWMVLLQQVSAACYNGQVEGSIISLRNGETSECKQGIATKLSAW
RNTKREDVTASDTEKNQWHFELFGDSRPLSFANHRGPWMRAGRKDEPRPW
LQFGRRDINFEVFHSDKYNEPPFAMINGKRTANSKKIYSEKINELPFAIM
KGKRKVNSKRLHSVEINDLPFVMMNGKRHARDNIVGPKGMSLQWASRFGK
KDNSKKELKIKNSNSKRNTKPWFDIGSEGSSLQWQVNPFGKRGKRDTLPW
YELEGGGLHWNRRIASKRSQRLQLPPRVPHKRGERY Run BLAST on NCBI transcript from alignment at scaffold_266:621685..622762+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055959 ID=TCONS_00055959|Name=TCONS_00055959|organism=Clytia hemisphaerica|type=transcript|length=1078bp|location=Sequence derived from alignment at scaffold_266:621685..622762+ (Clytia hemisphaerica)
GTTTGATACTATAGAAGGAGATACGGGTCAAAGATTGGACCATGCTGCTC
ATCCTTGCTTTTTGGATGGTTCTTCTACAACAAGTTAGCGCTGCTTGTTA
TAACGGTATGTTGAGCGTTCTTTAAATTAGTTTCTTACATTTTTTAAGCT
TAAGaagattgttttcaaaaaaggtttttcaaacaattcaaagaattttc
taACAATTCATGAACTCACTTGAACTTCCTGAACATTGTCTGAACATTAA
ACTTTAATCAATTTATCCCATCTCTTTAATACAGGACAAGTTGAAGGATC
GATCATATCTTTACGTAATGGTGAAACCTCGGAATGCAAACAGGGTATCG
CTACCAAACTTTCTGCGTGGCGTAATACAAAAAGAGAGGACGTCACTGCA
AGTGACACGGAGAAAAACCAATGGCATTTTGAACTCTTTGGTGATAGCAG
ACCACTTTCATTTGCGAATCATAGAGGACCTTGGATGCGCGCTGGCAGAA
AGGATGAACCAAGACCATGGCTTCAGTTCGGGAGAAGAGATATTAATTTT
GAGGTGTTTCACTCCGACAAATACAATGAACCACCATTTGCCATGATAAA
CGGGAAGAGAACTGCTAACTCCAAGAAAATTTACTCTGAGAAAATCAATG
AACTACCCTTCGCAATCATGAAAGGGAAAAGAAAAGTTAATTCCAAAAGG
CTTCACTCCGTGGAAATCAATGACCTACCCTTTGTAATGATGAATGGGAA
GAGACACGCACGCGACAACATTGTTGGTCCCAAGGGTATGTCCCTTCAAT
GGGCAAGTCGCTTTGGTAAAAAAGACAACTCGAAGAAAGAACTCAAGATT
AAAAACAGTAACAGTAAAAGAAATACAAAGCCTTGGTTCGACATTGGATC
TGAAGGCTCTTCTCTTCAATGGCAAGTTAATCCTTTTGGTAAAAGAGGAA
AAAGGGATACATTACCGTGGTACGAGCTTGAAGGAGGAGGCCTCCATTGG
AATCGGAGAATTGCCAGTAAGCGTAGCCAACGTCTTCAGCTTCCACCACG
TGTACCTCACAAACGAGGAGAGAGATAT Coding sequence (CDS) from alignment at scaffold_266:621685..622762+ >TCONS_00055959 ID=TCONS_00055959|Name=TCONS_00055959|organism=Clytia hemisphaerica|type=CDS|length=1716bp|location=Sequence derived from alignment at scaffold_266:621685..622762+ (Clytia hemisphaerica)
ATGCTGCTCATCCTTGCTTTTTGGATGGTTCTTCTACAACAAGTTAGCGC
TGCTTGTTATAACGGACAAGTTGAAGGATCGATCATATCTTTACGTAATG
GTGAAACCTCGGAATGCAAACAGGGTATCGCTACCAAACTTTCTGCGTGG
CGTAATACAAAAAGAGAGGACGTCACTGCAAGTGACACGGAGAAAAACCA
ATGGCATTTTGAACTCTTTGGTGATAGCAGACCACTTTCATTTGCGAATC
ATAGAGGACCTTGGATGCGCGCTGGCAGAAAGGATGAACCAAGACCATGG
CTTCAGTTCGGGAGAAGAGATATTAATTTTGAGGTGTTTCACTCCGACAA
ATACAATGAACCACCATTTGCCATGATAAACGGGAAGAGAACTGCTAACT
CCAAGAAAATTTACTCTGAGAAAATCAATGAACTACCCTTCGCAATCATG
AAAGGGAAAAGAAAAGTTAATTCCAAAAGGCTTCACTCCGTGGAAATCAA
TGACCTACCCTTTGTAATGATGAATGGGAAGAGACACGCACGCGACAACA
TTGTTGGTCCCAAGGGTATGTCCCTTCAATGGGCAAGTCGCTTTGGTAAA
AAAGACAACTCGAAGAAAGAACTCAAGATTAAAAACAGTAACAGTAAAAG
AAATACAAAGCCTTGGTTCGACATTGGATCTGAAGGCTCTTCTCTTCAAT
GGCAAGTTAATCCTTTTGGTAAAAGAGGAAAAAGGGATACATTACCGTGG
TACGAGCTTGAAGGAGGAGGCCTCCATTGGAATCGGAGAATTGCCAGTAA
GCGTAGCCAACGTCTTCAGCTTCCACCACGTGTACCTCACAAACGAGGAG
AGAGATATATGCTGCTCATCCTTGCTTTTTGGATGGTTCTTCTACAACAA
GTTAGCGCTGCTTGTTATAACGGACAAGTTGAAGGATCGATCATATCTTT
ACGTAATGGTGAAACCTCGGAATGCAAACAGGGTATCGCTACCAAACTTT
CTGCGTGGCGTAATACAAAAAGAGAGGACGTCACTGCAAGTGACACGGAG
AAAAACCAATGGCATTTTGAACTCTTTGGTGATAGCAGACCACTTTCATT
TGCGAATCATAGAGGACCTTGGATGCGCGCTGGCAGAAAGGATGAACCAA
GACCATGGCTTCAGTTCGGGAGAAGAGATATTAATTTTGAGGTGTTTCAC
TCCGACAAATACAATGAACCACCATTTGCCATGATAAACGGGAAGAGAAC
TGCTAACTCCAAGAAAATTTACTCTGAGAAAATCAATGAACTACCCTTCG
CAATCATGAAAGGGAAAAGAAAAGTTAATTCCAAAAGGCTTCACTCCGTG
GAAATCAATGACCTACCCTTTGTAATGATGAATGGGAAGAGACACGCACG
CGACAACATTGTTGGTCCCAAGGGTATGTCCCTTCAATGGGCAAGTCGCT
TTGGTAAAAAAGACAACTCGAAGAAAGAACTCAAGATTAAAAACAGTAAC
AGTAAAAGAAATACAAAGCCTTGGTTCGACATTGGATCTGAAGGCTCTTC
TCTTCAATGGCAAGTTAATCCTTTTGGTAAAAGAGGAAAAAGGGATACAT
TACCGTGGTACGAGCTTGAAGGAGGAGGCCTCCATTGGAATCGGAGAATT
GCCAGTAAGCGTAGCCAACGTCTTCAGCTTCCACCACGTGTACCTCACAA
ACGAGGAGAGAGATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055959-exon-scaffold_266-1491911889:621685..621789 | TCONS_00055959-exon-scaffold_266-1491911889:621685..621789 | Clytia hemisphaerica | exon |
| TCONS_00055959-exon-scaffold_266-1510915933:621685..621789 | TCONS_00055959-exon-scaffold_266-1510915933:621685..621789 | Clytia hemisphaerica | exon |
| TCONS_00055959-exon-scaffold_266-1575043694:621685..621789 | TCONS_00055959-exon-scaffold_266-1575043694:621685..621789 | Clytia hemisphaerica | exon |
| TCONS_00055959-exon-scaffold_266-1491911889:621969..622762 | TCONS_00055959-exon-scaffold_266-1491911889:621969..622762 | Clytia hemisphaerica | exon |
| TCONS_00055959-exon-scaffold_266-1510915933:621969..622762 | TCONS_00055959-exon-scaffold_266-1510915933:621969..622762 | Clytia hemisphaerica | exon |
| TCONS_00055959-exon-scaffold_266-1575043694:621969..622762 | TCONS_00055959-exon-scaffold_266-1575043694:621969..622762 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_266 | supercontig | scaffold_266:621685..622762 + |
Blast
The following BLAST results are available for this feature:
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