TCONS_00055960 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055960
Unique NameTCONS_00055960
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length234

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055960 ID=TCONS_00055960|Name=TCONS_00055960|organism=Clytia hemisphaerica|type=transcript|length=234bp
tcagGAATCAAGATTTGGAGCACAAGATTCACCAAGTTGAGCAAGCCAAC
GAAAAGATGAAGCAAAATATCGAGAAAGAACTGATGAAGCTCAGCGAACA
AAATCAACAATTAAGCGAAGGTAAAGTCAAACGCCAAATGTCCATCATGA
GAAGAGAACAAAAGATCGTCAATCTCGAATCCAAATTAAACGAATATGCT
TCAGAAAGAAAAGCACACGAAGATAAAATGAANT
Run BLAST on NCBI

transcript from alignment at scaffold_266:630693..631626+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055960 ID=TCONS_00055960|Name=TCONS_00055960|organism=Clytia hemisphaerica|type=transcript|length=934bp|location=Sequence derived from alignment at scaffold_266:630693..631626+ (Clytia hemisphaerica)
tcagGAATCAAGATTTGGAGCACAAGATTCACCAAGTTGAGCAAGCCAAC GAAAAGATGAAGCAAAATATCGAGAAAGAACTGATGAAGCTCAGCGAACA GTAAGATCTAGTTATTCAGCCCACCATCAAAAAACTTATCCTTATTATCA ACAAATACAAATACAAATACAATGATAATTTGAGATCATTTCATTCTACA CGTTGACTAGACATTGCAAGTAATATGTCTAAAAATTCAGCCGAAATCTT GATATTATAGTGATGGTGTAGTTGATTACCTCCCTATCAGTCCTNcttta ggcgtagaaactttcgcgagcagaaactttcgcgattttcgcgaattttg gtccttttcgcgaaagtaaatgtctttaaaaattctaggaagggccattc gcgaaagtttatgctcgcgaaaaattttcgacaaaatagaaaatctgtta aacttcaaactttgaataaaatgtaagttttatggcactttttagcctgc taaaagactaataagtcaaaggacaaatgtttcaagccaaNTTgcttttt aactttattttgcTAATTCTTTCTTGTTTCTTTCAAGAAATCAACAATTA AGCGAAGGTAAAGTCAAACGCCAAATGTCCATCATGAGAAGAGAACAAAA GATCGTCAATCTCGAATCCAAGTAAGTTCTGGAGTAACTGGTGATGTGAC CAGTCACAATATAGAAATTTGAACTTCTCAGCTACTCAAAAGAATCTATC CCTTTAACCAACTAATTCTCTCACATTTCTACTATATTTCAAAGGTATTG AACTTCGCAGATATTGATAGGAGTTCGAGCTTATGTATCTGCTCGTGGAT ATGTTTTACGCAAATTTTATTCTACTTCCAATAGATTAAACGAATATGCT TCAGAAAGAAAAGCACACGAAGATAAAATGAANT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035225XLOC_035225Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055960-exon-scaffold_266-1491911889:630693..630792TCONS_00055960-exon-scaffold_266-1491911889:630693..630792Clytia hemisphaericaexon
TCONS_00055960-exon-scaffold_266-1510915933:630693..630792TCONS_00055960-exon-scaffold_266-1510915933:630693..630792Clytia hemisphaericaexon
TCONS_00055960-exon-scaffold_266-1575043694:630693..630792TCONS_00055960-exon-scaffold_266-1575043694:630693..630792Clytia hemisphaericaexon
TCONS_00055960-exon-scaffold_266-1491911889:631280..631363TCONS_00055960-exon-scaffold_266-1491911889:631280..631363Clytia hemisphaericaexon
TCONS_00055960-exon-scaffold_266-1510915933:631280..631363TCONS_00055960-exon-scaffold_266-1510915933:631280..631363Clytia hemisphaericaexon
TCONS_00055960-exon-scaffold_266-1575043694:631280..631363TCONS_00055960-exon-scaffold_266-1575043694:631280..631363Clytia hemisphaericaexon
TCONS_00055960-exon-scaffold_266-1491911889:631577..631626TCONS_00055960-exon-scaffold_266-1491911889:631577..631626Clytia hemisphaericaexon
TCONS_00055960-exon-scaffold_266-1510915933:631577..631626TCONS_00055960-exon-scaffold_266-1510915933:631577..631626Clytia hemisphaericaexon
TCONS_00055960-exon-scaffold_266-1575043694:631577..631626TCONS_00055960-exon-scaffold_266-1575043694:631577..631626Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_266supercontigscaffold_266:630693..631626 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (1.09735 tpm) - - (97.7713 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.98125 4.83008 5.60818 1.09735 50.7647 43.2819 68.7746 97.7713 35.0608 45.4965 22.08 26.39 10.5413 17.1051 6.1876 12.0732 14.1295 13.7201 25.2733 12.1214 12.4513 15.4169 3.40749 7.22845 25.5262 27.5276 5.43337 1.44966 13.1942 12.3226
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055960 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
tcagGAATCAAGATTTGGAGCACAAGATTCACCAAGTTGAGCAAGCCAACGAAAAGATGAAGCAAAATATCGAGAAAGAACTGATGAAGCTCAGCGAACAAAATCAACAATTAAGCGAAGGTAAAGTCAAACGCCAAATGTCCATCATGAGAAGAGAACAAAAGATCGTCAATCTCGAATCCAAATTAAACGAATATGCTTCAGAAAGAAAAGCACACGAAGATAAAATGAANT20406080100120140160180200220Sequence
Match NameE-valueIdentityDescription
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