TCONS_00056119 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056119
Unique NameTCONS_00056119
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length751

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056119 ID=TCONS_00056119|Name=TCONS_00056119|organism=Clytia hemisphaerica|type=transcript|length=751bp
gcacatttgAAGCTACGAATTAGCTATTATTAGTTTCACTAGTCATTTAT
CAGTCAGTCTAGAATTTTCCTGCCTCCTGtaatcaatcaaaatttaaagg
ttTAAAATCAAAGATCAAAAATTAAAGATATCCATAAAGTTTCTTTCTTC
GTCTTCATTATATATAGCATTAAGATCCTCCTCAGAATCGTTAGTATCGT
CAGTTTCATCAGTGTTCGTACAAGAGGTGCCATGACACTCCTTACAAAGG
TAAGTACATTTCAGTCCAGCTTTACGACACGTGCACCTGTAAGTATCACA
CATACCTTTACAACCACAACGAATAACTTTCAATAGATCAGAGGGACCAG
CTTCAATATCTGTCATGATTGGAGTAAAGGATTCAGAAACCATCTGCCAC
CCCCAGTTAAGTGGCATGTTGTCGGTATTTCTGAGCTCTCGCCATACTTT
CAACTGGTGATACACGCGTAAACCATGGTAATAAGCTGCCCTAGGTGATG
GTGGTAGCATTGAAGGGTCGATGACAGCACGATTTGACAAAACCATTTGC
TCGTACTTCTTCTTCCGTATAGTTGGCAATGTATCCGTTGAAGAGTACAA
GAGTTCAAACAGCCTTATCGTGATATCACCAATTTTCTCGGGAGAATTTT
CTTTGTAGAATTCTCTGACGAGTGACTGAATTTCGGTTGATTCTTCTATT
TTGTTGAAGATTGACGTCTTTCCGAAATTGTGAATTGCCGATGTCGTATC
A
Run BLAST on NCBI

protein sequence of TCONS_00056119-protein

>TCONS_00056119-protein ID=TCONS_00056119-protein|Name=TCONS_00056119-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
DTTSAIHNFGKTSIFNKIEESTEIQSLVREFYKENSPEKIGDITIRLFEL
LYSSTDTLPTIRKKKYEQMVLSNRAVIDPSMLPPSPRAAYYHGLRVYHQL
KVWRELRNTDNMPLNWGWQMVSESFTPIMTDIEAGPSDLLKVIRCGCKGM
CDTYRCTCRKAGLKCTYLCKECHGTSCTNTDETDDTNDSEEDLNAIYNED
EERNFMDIFNF
Run BLAST on NCBI

transcript from alignment at scaffold_267:144935..145685

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056119 ID=TCONS_00056119|Name=TCONS_00056119|organism=Clytia hemisphaerica|type=transcript|length=751bp|location=Sequence derived from alignment at scaffold_267:144935..145685 (Clytia hemisphaerica)
TGATACGACATCGGCAATTCACAATTTCGGAAAGACGTCAATCTTCAACA
AAATAGAAGAATCAACCGAAATTCAGTCACTCGTCAGAGAATTCTACAAA
GAAAATTCTCCCGAGAAAATTGGTGATATCACGATAAGGCTGTTTGAACT
CTTGTACTCTTCAACGGATACATTGCCAACTATACGGAAGAAGAAGTACG
AGCAAATGGTTTTGTCAAATCGTGCTGTCATCGACCCTTCAATGCTACCA
CCATCACCTAGGGCAGCTTATTACCATGGTTTACGCGTGTATCACCAGTT
GAAAGTATGGCGAGAGCTCAGAAATACCGACAACATGCCACTTAACTGGG
GGTGGCAGATGGTTTCTGAATCCTTTACTCCAATCATGACAGATATTGAA
GCTGGTCCCTCTGATCTATTGAAAGTTATTCGTTGTGGTTGTAAAGGTAT
GTGTGATACTTACAGGTGCACGTGTCGTAAAGCTGGACTGAAATGTACTT
ACCTTTGTAAGGAGTGTCATGGCACCTCTTGTACGAACACTGATGAAACT
GACGATACTAACGATTCTGAGGAGGATCTTAATGCTATATATAATGAAGA
CGAAGAAAGAAACTTTATGGATATCTTTAATTTTTGATCTTTGATTTTAa
acctttaaattttgattgattaCAGGAGGCAGGAAAATTCTAGACTGACT
GATAAATGACTAGTGAAACTAATAATAGCTAATTCGTAGCTTcaaatgtg
c

Coding sequence (CDS) from alignment at scaffold_267:144935..145685

>TCONS_00056119 ID=TCONS_00056119|Name=TCONS_00056119|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at scaffold_267:144935..145685 (Clytia hemisphaerica)
GATACGACATCGGCAATTCACAATTTCGGAAAGACGTCAATCTTCAACAA
AATAGAAGAATCAACCGAAATTCAGTCACTCGTCAGAGAATTCTACAAAG
AAAATTCTCCCGAGAAAATTGGTGATATCACGATAAGGCTGTTTGAACTC
TTGTACTCTTCAACGGATACATTGCCAACTATACGGAAGAAGAAGTACGA
GCAAATGGTTTTGTCAAATCGTGCTGTCATCGACCCTTCAATGCTACCAC
CATCACCTAGGGCAGCTTATTACCATGGTTTACGCGTGTATCACCAGTTG
AAAGTATGGCGAGAGCTCAGAAATACCGACAACATGCCACTTAACTGGGG
GTGGCAGATGGTTTCTGAATCCTTTACTCCAATCATGACAGATATTGAAG
CTGGTCCCTCTGATCTATTGAAAGTTATTCGTTGTGGTTGTAAAGGTATG
TGTGATACTTACAGGTGCACGTGTCGTAAAGCTGGACTGAAATGTACTTA
CCTTTGTAAGGAGTGTCATGGCACCTCTTGTACGAACACTGATGAAACTG
ACGATACTAACGATTCTGAGGAGGATCTTAATGCTATATATAATGAAGAC
GAAGAAAGAAACTTTATGGATATCTTTAATTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035321XLOC_035321Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056119-proteinTCONS_00056119-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056119-exon-scaffold_267-1491911889:144935..145685TCONS_00056119-exon-scaffold_267-1491911889:144935..145685Clytia hemisphaericaexon
TCONS_00056119-exon-scaffold_267-1510915933:144935..145685TCONS_00056119-exon-scaffold_267-1510915933:144935..145685Clytia hemisphaericaexon
TCONS_00056119-exon-scaffold_267-1575043694:144935..145685TCONS_00056119-exon-scaffold_267-1575043694:144935..145685Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:144935..145685 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.176353	0.210192	0.123893	0	0.563881	0.534485	0.750676	0.562648	0.168149	0	0.143659	1.28667e-06	0.402811	0.439306	0.50035	0.519374	0	0.138711	0.208747	0	0.26736	0.0926085	0	0.068233	1.48311	1.04738	0.229236	0	0.0726523	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056119 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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