TCONS_00056089 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056089
Unique NameTCONS_00056089
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056089 ID=TCONS_00056089|Name=TCONS_00056089|organism=Clytia hemisphaerica|type=transcript|length=346bp
CAGAACTGTGCCAAATTGAGggctgtaaaaaaattatgaagccTTTTAAT
GATCTTACCCGACACTTAAGAATTTCGCACGATCTTACTAGAAAAGAGTA
TAATGAAAAAAGAAAACTTTTCATGGCCAAGGACGTTATTATTAACGAAA
ATATGAATGCTTCAATAACAGGTATGCCAAGTGAAACAAACAATCAGGAC
TTAACAGCGGTTGACTCGGAAAACCAAAATGATCCGGATTCAGACAAAGA
AAGTCTACATCCCAGTGGGCACACAAAGTCTTGAGGACGTCCTTGCGCCG
TGCAAATCAGGTCCGCCCGTCAGCATATCGTCCCCGTCCAAATAGG
Run BLAST on NCBI

transcript from alignment at scaffold_267:385478..386237-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056089 ID=TCONS_00056089|Name=TCONS_00056089|organism=Clytia hemisphaerica|type=transcript|length=760bp|location=Sequence derived from alignment at scaffold_267:385478..386237- (Clytia hemisphaerica)
CAGAACTGTGCCAAATTGAGGGCTGTAAAAAAATTATGAAGCCTTTTAAT
GATCTTACCCGACACTTAAGAATTTCGCACGATCTTACTAGAAAAGAGTA
TAATGAAAAAAGGTATTTTTGGGTTTTACTAACTTCTACTACTTTTCAGT
TCTAAAATTCAGCGTTTTCAAGTATTACAATTTCGAAAGAATTAAAATGA
TTATAATGTATGCAAAACTTTTAGCTCTACTCTATTCGTACTAAGGGAGG
GGGTGTTCATGATGTGGGACTGATAGCTACTGAAATAAAAATGCTATGCC
AAGAATATTTTGTGTCTTTTCCTAACGAATAAGGTTAAATCAAGTTGTCT
TATTTTAGAAAACTTTTCATGGCCAAGGACGTTATTATTAACGAAAATAT
GAATGCTTCAATAACAGGTGATTTTCAATAATTTAGCTTTGTGAATTTAA
ATTTTAAAGAATCTCGCTATTGCAACAATGAGTTTCTTTTAAAAAACATT
CTGGTCGTTTGACTGGAAAATAGTTTTAAAACTAGTTTATTCGTATAGTA
ACTAACTATACACTCCTTCTACTATGGCTTTTTAGGTATGCCAAGTGAAA
CAAACAATCAGGACTTAACAGCGGTTGACTCGGAAAACCAAAATGATCCG
GATTCAGACAAAGAAAGTCTACATCCCAGTGGGCACACAAAGTCTTGAGG
ACGTCCTTGCGCCGTGCAAATCAGGTCCGCCCGTCAGCATATCGTCCCCG
TCCAAATAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035300XLOC_035300Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056089-exon-scaffold_267-1575043694:386126..386237TCONS_00056089-exon-scaffold_267-1575043694:386126..386237Clytia hemisphaericaexon
TCONS_00056089-exon-scaffold_267-1575043694:385821..385879TCONS_00056089-exon-scaffold_267-1575043694:385821..385879Clytia hemisphaericaexon
TCONS_00056089-exon-scaffold_267-1575043694:385478..385652TCONS_00056089-exon-scaffold_267-1575043694:385478..385652Clytia hemisphaericaexon
TCONS_00056089-exon-scaffold_267-1510915933:386126..386237TCONS_00056089-exon-scaffold_267-1510915933:386126..386237Clytia hemisphaericaexon
TCONS_00056089-exon-scaffold_267-1510915933:385821..385879TCONS_00056089-exon-scaffold_267-1510915933:385821..385879Clytia hemisphaericaexon
TCONS_00056089-exon-scaffold_267-1510915933:385478..385652TCONS_00056089-exon-scaffold_267-1510915933:385478..385652Clytia hemisphaericaexon
TCONS_00056089-exon-scaffold_267-1491911889:386126..386237TCONS_00056089-exon-scaffold_267-1491911889:386126..386237Clytia hemisphaericaexon
TCONS_00056089-exon-scaffold_267-1491911889:385821..385879TCONS_00056089-exon-scaffold_267-1491911889:385821..385879Clytia hemisphaericaexon
TCONS_00056089-exon-scaffold_267-1491911889:385478..385652TCONS_00056089-exon-scaffold_267-1491911889:385478..385652Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:385478..386237 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.252528	0.293209	0.286859	0	0	0	0	1.7896	1.78216	0.705417	1.75911	6.58042e-05	0	0.774614	1.02717	4.21903	3.96979	1.30882	0	0	0.686328	0.446992	0	0	0.0786712	0	0	0.528844	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056089 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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