TCONS_00056092 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056092
Unique NameTCONS_00056092
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056092 ID=TCONS_00056092|Name=TCONS_00056092|organism=Clytia hemisphaerica|type=transcript|length=286bp
GGCCCTGTGATTGATCGTAGCAAACAAAGTGGAAGCTGCCGTGTCAAAGA
TTAAAACTTTTCATGGCCAAGGACGTTATTATTAACGAAAATATGAATGC
TTCAATAACAGGTATGCCAAGTGAAACAAACAATCAGGACTTAACAGCGG
TTGACTCGGAAAACCAAAATGATCCGGATTCAGACAAAGAAAGTCTACAT
CCCAGTGGGCACACAAAGTCTTGAGGACGTCCTTGCGCCGTGCAAATCAG
GTCCGCCCGTCAGCATATCGTCCCCGTCCAAATAGG
Run BLAST on NCBI

transcript from alignment at scaffold_267:385478..386844-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056092 ID=TCONS_00056092|Name=TCONS_00056092|organism=Clytia hemisphaerica|type=transcript|length=1367bp|location=Sequence derived from alignment at scaffold_267:385478..386844- (Clytia hemisphaerica)
GGCCCTGTGGTAAGTGCATTGTTTCAAAGATCTAAGGTGTTATCACTGTC
ATAATTTAGGCTTATTTCAAAAGCAGACTGCTTTTGAATTTTTTTCTTAA
TTAATTATATCATTTTAAGTAATTAAGAAAGCATGCACCTTAAAAAGACG
TGATAAAGACGTAAGTCATGTAATTTTTACAAAACAGCTCAATCTGTCAT
GTCTAACAGAAAATGTATAACACGATATACTATAATGACCTATGCAACTT
ACTACTTTTAATGCAATACAAATAAAGAGATGGATTCTGTAGACTATATT
CATAGTAGACTATGGTCATAGCCCTTAATATGAGAATGTTTTATTTTAAT
TTCAATTTCGTTCGTTTTTATAGATTGATCGTAGCAAACAAAGTGGAAGC
TGCCGTGTCAAAGATTGTACATATTATCACAAGTTTCTTAAAAATTTGAA
TGCACAGTTTCACGTTGGCAGAACATAAAAAATTGCCTCCGTCATTGCTG
GGTATTGCCATAAAACAAAACGAGGGTAAAATTATAATTATAATAATAAT
TTTTTTACAGCCCTCAATTTGGCACAGTTCTGATACTCTGTACCTCATAC
AGGGTATCAGAACTGTGCCAAATTGAGGGCTGTAAAAAAATTATGAAGCC
TTTTAATGATCTTACCCGACACTTAAGAATTTCGCACGATCTTACTAGAA
AAGAGTATAATGAAAAAAGGTATTTTTGGGTTTTACTAACTTCTACTACT
TTTCAGTTCTAAAATTCAGCGTTTTCAAGTATTACAATTTCGAAAGAATT
AAAATGATTATAATGTATGCAAAACTTTTAGCTCTACTCTATTCGTACTA
AGGGAGGGGGTGTTCATGATGTGGGACTGATAGCTACTGAAATAAAAATG
CTATGCCAAGAATATTTTGTGTCTTTTCCTAACGAATAAGGTTAAATCAA
GTTGTCTTATTTTAGAAAACTTTTCATGGCCAAGGACGTTATTATTAACG
AAAATATGAATGCTTCAATAACAGGTGATTTTCAATAATTTAGCTTTGTG
AATTTAAATTTTAAAGAATCTCGCTATTGCAACAATGAGTTTCTTTTAAA
AAACATTCTGGTCGTTTGACTGGAAAATAGTTTTAAAACTAGTTTATTCG
TATAGTAACTAACTATACACTCCTTCTACTATGGCTTTTTAGGTATGCCA
AGTGAAACAAACAATCAGGACTTAACAGCGGTTGACTCGGAAAACCAAAA
TGATCCGGATTCAGACAAAGAAAGTCTACATCCCAGTGGGCACACAAAGT
CTTGAGGACGTCCTTGCGCCGTGCAAATCAGGTCCGCCCGTCAGCATATC
GTCCCCGTCCAAATAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035300XLOC_035300Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056092-exon-scaffold_267-1575043694:386836..386844TCONS_00056092-exon-scaffold_267-1575043694:386836..386844Clytia hemisphaericaexon
TCONS_00056092-exon-scaffold_267-1575043694:386429..386471TCONS_00056092-exon-scaffold_267-1575043694:386429..386471Clytia hemisphaericaexon
TCONS_00056092-exon-scaffold_267-1575043694:385821..385879TCONS_00056092-exon-scaffold_267-1575043694:385821..385879Clytia hemisphaericaexon
TCONS_00056092-exon-scaffold_267-1575043694:385478..385652TCONS_00056092-exon-scaffold_267-1575043694:385478..385652Clytia hemisphaericaexon
TCONS_00056092-exon-scaffold_267-1510915933:386836..386844TCONS_00056092-exon-scaffold_267-1510915933:386836..386844Clytia hemisphaericaexon
TCONS_00056092-exon-scaffold_267-1510915933:386429..386471TCONS_00056092-exon-scaffold_267-1510915933:386429..386471Clytia hemisphaericaexon
TCONS_00056092-exon-scaffold_267-1510915933:385821..385879TCONS_00056092-exon-scaffold_267-1510915933:385821..385879Clytia hemisphaericaexon
TCONS_00056092-exon-scaffold_267-1510915933:385478..385652TCONS_00056092-exon-scaffold_267-1510915933:385478..385652Clytia hemisphaericaexon
TCONS_00056092-exon-scaffold_267-1491911889:386836..386844TCONS_00056092-exon-scaffold_267-1491911889:386836..386844Clytia hemisphaericaexon
TCONS_00056092-exon-scaffold_267-1491911889:386429..386471TCONS_00056092-exon-scaffold_267-1491911889:386429..386471Clytia hemisphaericaexon
TCONS_00056092-exon-scaffold_267-1491911889:385821..385879TCONS_00056092-exon-scaffold_267-1491911889:385821..385879Clytia hemisphaericaexon
TCONS_00056092-exon-scaffold_267-1491911889:385478..385652TCONS_00056092-exon-scaffold_267-1491911889:385478..385652Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:385478..386844 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.225745	0.446602	0	0	0	0	0	0	11.9449	7.5466	2.78396	5.21519	3.84576	9.55825	2.35331	4.47833	9.23365	5.59067	4.20433	2.62772	2.6543	2.89627	1.80488	0	0.110735	0	1.89549	1.11923	0.735796	0.76584
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056092 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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