TCONS_00056130 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056130
Unique NameTCONS_00056130
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length671

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056130 ID=TCONS_00056130|Name=TCONS_00056130|organism=Clytia hemisphaerica|type=transcript|length=671bp
AGTTTaaggaaaaatgaaactttacaaatggtATGTACTtaaaaactttc
tttacaatgGTCTTAACAAATATAAACGAAGACAagaaaaaatgatcaaa
taggTATCACTTTTTGTGCAAGGAAGATATCAAACCATCgaaagtaataa
aaaagaaatcaagaaaagaaACCAATTAAAATTGTATAAACACAATGTTC
TCGTTTTTTGTTCGTTTTGCCAGTTAATCACCTATCTCTTCTGCTTTTTG
ACTTTGATGATGAGGAATTTGATGAACTGTGCCTGCTAGAACTCGTTGAT
GTCGATGaactttttgacaattttggaATTTGTGGATGTTCCTTTTGCAC
GAAAGGACAATATGTCGAATAATGGCCAACTTTTTTATAATTGTAACACA
TAACGTCATCAAAACGAGATGACCTGTTTGATTTTCTCTGttcaatttca
atgttttgtttgaattttcgGCAGATTTTCTAGCCTCTTTTACCTGCTTT
TCTTTCAATGCCCCACTTGAAACCAACAGATTTTGCTTATACAATTTCAC
CACCGTCCATCCTTCCCTGTCGGCAAGTCTTAACATTTAAATTCTATCTT
CTAAAAGAAGCTTACCTTGTTTTATGAACGTTAAAGCAGATTCATTTTCT
CCGGCTTCCAATGCTTCTATG
Run BLAST on NCBI

protein sequence of TCONS_00056130-protein

>TCONS_00056130-protein ID=TCONS_00056130-protein|Name=TCONS_00056130-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MLRLADREGWTVVKLYKQNLLVSSGALKEKQVKEARKSAENSNKTLKLNR
ENQTGHLVLMTLCVTIIKKLAIIRHIVLSCKRNIHKFQNCQKVHRHQRVL
AGTVHQIPHHQSQKAEEIGD
Run BLAST on NCBI

transcript from alignment at scaffold_267:396984..397654

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056130 ID=TCONS_00056130|Name=TCONS_00056130|organism=Clytia hemisphaerica|type=transcript|length=671bp|location=Sequence derived from alignment at scaffold_267:396984..397654 (Clytia hemisphaerica)
CATAGAAGCATTGGAAGCCGGAGAAAATGAATCTGCTTTAACGTTCATAA AACAAGGTAAGCTTCTTTTAGAAGATAGAATTTAAATGTTAAGACTTGCC GACAGGGAAGGATGGACGGTGGTGAAATTGTATAAGCAAAATCTGTTGGT TTCAAGTGGGGCATTGAAAGAAAAGCAGGTAAAAGAGGCTAGAAAATCTG CcgaaaattcaaacaaaacattgaaattgaaCAGAGAAAATCAAACAGGT CATCTCGTTTTGATGACGTTATGTGTTACAATTATAAAAAAGTTGGCCAT TATTCGACATATTGTCCTTTCGTGCAAAAGGAACATCCACAAATtccaaa attgtcaaaaagttCATCGACATCAACGAGTTCTAGCAGGCACAGTTCAT CAAATTCCTCATCATCAAAGTCAAAAAGCAGAAGAGATAGGTGATTAACT GGCAAAACGAACAAAAAACGAGAACATTGTGTTTATACAATTTTAATTGG TttcttttcttgatttcttttttattactttcGATGGTTTGATATCTTCC TTGCACAAAAAGTGATAcctatttgatcattttttctTGTCTTCGTTTAT ATTTGTTAAGACcattgtaaagaaagtttttaAGTACATaccatttgtaa agtttcatttttccttAAACT

Coding sequence (CDS) from alignment at scaffold_267:396984..397654

>TCONS_00056130 ID=TCONS_00056130|Name=TCONS_00056130|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_267:396984..397654 (Clytia hemisphaerica)
ATGTTAAGACTTGCCGACAGGGAAGGATGGACGGTGGTGAAATTGTATAA
GCAAAATCTGTTGGTTTCAAGTGGGGCATTGAAAGAAAAGCAGGTAAAAG
AGGCTAGAAAATCTGCcgaaaattcaaacaaaacattgaaattgaaCAGA
GAAAATCAAACAGGTCATCTCGTTTTGATGACGTTATGTGTTACAATTAT
AAAAAAGTTGGCCATTATTCGACATATTGTCCTTTCGTGCAAAAGGAACA
TCCACAAATtccaaaattgtcaaaaagttCATCGACATCAACGAGTTCTA
GCAGGCACAGTTCATCAAATTCCTCATCATCAAAGTCAAAAAGCAGAAGA
GATAGGTGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035332XLOC_035332Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056130-proteinTCONS_00056130-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056130-exon-scaffold_267-1491911889:396984..397654TCONS_00056130-exon-scaffold_267-1491911889:396984..397654Clytia hemisphaericaexon
TCONS_00056130-exon-scaffold_267-1510915933:396984..397654TCONS_00056130-exon-scaffold_267-1510915933:396984..397654Clytia hemisphaericaexon
TCONS_00056130-exon-scaffold_267-1575043694:396984..397654TCONS_00056130-exon-scaffold_267-1575043694:396984..397654Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:396984..397654 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (4.56792 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.53071 4.56792 3.04316 1.4461 0.310674 0 0.0987278 0.184856 0.129422 0.240464 0.0778002 0.153428 0.30643 0.212154 0.130815 0.187179 0.345883 0.354519 0 0 0.296986 0 0.440239 1.12068 0.247343 0.882992 0.105297 0.112375 0.340931 0.173677
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056130 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600Sequence
Match NameE-valueIdentityDescription
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