TCONS_00056135 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056135
Unique NameTCONS_00056135
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length315

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056135 ID=TCONS_00056135|Name=TCONS_00056135|organism=Clytia hemisphaerica|type=transcript|length=315bp
GACCAATATACTCGGAAAGCTCTCCGAAAACTTGCTTCAACTGATGACGA
CTACATTCAATTAGATATTGAACTGGTCGTCCCGGAAGAAGTTCAATCAT
TCGTCTACGAGGCAATCTCAGTTGAGCTGAAGCCGGAACTTACACGTCCG
TATCGAGATGTGTTGAAGCAAATATCGCACGATTCGTCGATTGCTGCAAT
GTTTCCACATGCTATTTTAGACGAGTCTATTAGAGTTACCACGGCTGTCA
TCAACAAAAATCTTTCTGAGGATGACCTATGGAATTATATAAGCGATATG
GAACACTTTAACATA
Run BLAST on NCBI

protein sequence of TCONS_00056135-protein

>TCONS_00056135-protein ID=TCONS_00056135-protein|Name=TCONS_00056135-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
DQYTRKALRKLASTDDDYIQLDIELVVPEEVQSFVYEAISVELKPELTRP
YRDVLKQISHDSSIAAMFPHAILDESIRVTTAVINKNLSEDDLWNYISDM
EHFNI
Run BLAST on NCBI

transcript from alignment at scaffold_267:486153..486467

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056135 ID=TCONS_00056135|Name=TCONS_00056135|organism=Clytia hemisphaerica|type=transcript|length=315bp|location=Sequence derived from alignment at scaffold_267:486153..486467 (Clytia hemisphaerica)
TATGTTAAAGTGTTCCATATCGCTTATATAATTCCATAGGTCATCCTCAG
AAAGATTTTTGTTGATGACAGCCGTGGTAACTCTAATAGACTCGTCTAAA
ATAGCATGTGGAAACATTGCAGCAATCGACGAATCGTGCGATATTTGCTT
CAACACATCTCGATACGGACGTGTAAGTTCCGGCTTCAGCTCAACTGAGA
TTGCCTCGTAGACGAATGATTGAACTTCTTCCGGGACGACCAGTTCAATA
TCTAATTGAATGTAGTCGTCATCAGTTGAAGCAAGTTTTCGGAGAGCTTT
CCGAGTATATTGGTC

Coding sequence (CDS) from alignment at scaffold_267:486153..486467

>TCONS_00056135 ID=TCONS_00056135|Name=TCONS_00056135|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at scaffold_267:486153..486467 (Clytia hemisphaerica)
TATGTTAAAGTGTTCCATATCGCTTATATAATTCCATAGGTCATCCTCAG
AAAGATTTTTGTTGATGACAGCCGTGGTAACTCTAATAGACTCGTCTAAA
ATAGCATGTGGAAACATTGCAGCAATCGACGAATCGTGCGATATTTGCTT
CAACACATCTCGATACGGACGTGTAAGTTCCGGCTTCAGCTCAACTGAGA
TTGCCTCGTAGACGAATGATTGAACTTCTTCCGGGACGACCAGTTCAATA
TCTAATTGAATGTAGTCGTCATCAGTTGAAGCAAGTTTTCGGAGAGCTTT
CCGAGTATATTGGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035337XLOC_035337Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056135-exon-scaffold_267-1491911889:486153..486467TCONS_00056135-exon-scaffold_267-1491911889:486153..486467Clytia hemisphaericaexon
TCONS_00056135-exon-scaffold_267-1510915933:486153..486467TCONS_00056135-exon-scaffold_267-1510915933:486153..486467Clytia hemisphaericaexon
TCONS_00056135-exon-scaffold_267-1575043694:486153..486467TCONS_00056135-exon-scaffold_267-1575043694:486153..486467Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056135-proteinTCONS_00056135-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:486153..486467 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.356584	0	0	0	0	0	0	0	0	0	0.203907	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056135 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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