TCONS_00056098 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056098
Unique NameTCONS_00056098
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length532

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056098 ID=TCONS_00056098|Name=TCONS_00056098|organism=Clytia hemisphaerica|type=transcript|length=532bp
CATTAGAATGTTGGTTCAGACTCTACCCAAGTATGTTTGGAGGAATAACC
TTGCAGGTTCGCAAGTGCATATGGATAGCATCCAAGTTTGCAAGACTTTC
AAGACATTATTTGACTTGTATGCTGCTTGTCATACTGTTTTGAATCGCGC
AGAGGGAATAGACCCAGACGAAACTGACATTCTAGAGCACGATATCAATG
AATTGATGTCCTTTTACCGGGCTAAGTTCCCAAGTGAGACGGTAACACCA
AAGTTACACTTACTTGAGGATCATGCCATCAACTTTATGAGAAAATGGAG
ATCATCCTTTGGGATATATGGCGAGCAAGGCATTGAGTCAATCCACAACA
TCTTCAATAAGAGCAAGCAAAACTATGTAGGAATGAAGAAAAGTACAGCT
CGACTTGGATCAATGCTTAGTGATCACTATTCTCGTGTATATCCAAAATC
TGTTTCATTTCGCCCTGAAATAAAGAGGAGAAAGGTATCAGAAGAATGAC
ATGGAATAAAATAAATGTTACGTTCAAAGCCA
Run BLAST on NCBI

protein sequence of TCONS_00056098-protein

>TCONS_00056098-protein ID=TCONS_00056098-protein|Name=TCONS_00056098-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
IRMLVQTLPKYVWRNNLAGSQVHMDSIQVCKTFKTLFDLYAACHTVLNRA
EGIDPDETDILEHDINELMSFYRAKFPSETVTPKLHLLEDHAINFMRKWR
SSFGIYGEQGIESIHNIFNKSKQNYVGMKKSTARLGSMLSDHYSRVYPKS
VSFRPEIKRRKVSEE
Run BLAST on NCBI

transcript from alignment at scaffold_267:510697..511513-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056098 ID=TCONS_00056098|Name=TCONS_00056098|organism=Clytia hemisphaerica|type=transcript|length=817bp|location=Sequence derived from alignment at scaffold_267:510697..511513- (Clytia hemisphaerica)
CATTAGAATGTTGGTTCAGACTCTACCCAAGTATGTTTGGAGGAATAACC
TTGCAGGTTCGCAAGTGCATATGGATAGCATCCAAGTTTGCAAGACTTTC
AAGACATTATTTGACTTGTATGCTGCTTGTCATACTGTTTTGAATCGCGC
AGAGGGAATAGACCCAGACGAAACTGACATTCTAGGTGAAGCTTGTTTGA
CTTAAGAATGACTTAATATTTCAATTTTTTAATATCTACAAAAAGAGACA
AATTATTTAAGTTCTTCTTGTGGTAAGATATCTTTTTAATAAAGTCCTTT
TGCAGTATAAAGTTGTTTCTTTCCCATCACTCTTCATGGAGTGAACTTAT
AGCTACGATAACAAACTTTGACTGGTACATTTGAGATTGTTACCTCTTAC
CTAGGCTTTCCGAATAAAAAAAAGGGATTCTATTCCTAACTTTTATTCCT
ATTCCTTTCATTATTCATAGAGCACGATATCAATGAATTGATGTCCTTTT
ACCGGGCTAAGTTCCCAAGTGAGACGGTAACACCAAAGTTACACTTACTT
GAGGATCATGCCATCAACTTTATGAGAAAATGGAGATCATCCTTTGGGAT
ATATGGCGAGCAAGGCATTGAGTCAATCCACAACATCTTCAATAAGAGCA
AGCAAAACTATGTAGGAATGAAGAAAAGTACAGCTCGACTTGGATCAATG
CTTAGTGATCACTATTCTCGTGTATATCCAAAATCTGTTTCATTTCGCCC
TGAAATAAAGAGGAGAAAGGTATCAGAAGAATGACATGGAATAAAATAAA
TGTTACGTTCAAAGCCA

Coding sequence (CDS) from alignment at scaffold_267:510697..511513-

>TCONS_00056098 ID=TCONS_00056098|Name=TCONS_00056098|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_267:510697..511513- (Clytia hemisphaerica)
AGCACGATATCAATGAATTGATGTCCTTTTACCGGGCTAAGTTCCCAAGT
GAGACGGTAACACCAAAGTTACACTTACTTGAGGATCATGCCATCAACTT
TATGAGAAAATGGAGATCATCCTTTGGGATATATGGCGAGCAAGGCATTG
AGTCAATCCACAACATCTTCAATAAGAGCAAGCAAAACTATGTAGGAATG
AAGAAAAGTACAGCTCGACTTGGATCAATGCTTAGTGATCACTATTCTCG
TGTATATCCAAAATCTGTTTCATTTCGCCCTGAAATAAAGAGGAGAAAGG
TATCAGAAGAATGAATTAGAATGTTGGTTCAGACTCTACCCAAGTATGTT
TGGAGGAATAACCTTGCAGGTTCGCAAGTGCATATGGATAGCATCCAAGT
TTGCAAGACTTTCAAGACATTATTTGACTTGTATGCTGCTTGTCATACTG
TTTTGAATCGCGCAGAGGGAATAGACCCAGACGAAACTGACATTCTAGAG
CACGATATCAATGAATTGATGTCCTTTTACCGGGCTAAGTTCCCAAGTGA
GACGGTAACACCAAAGTTACACTTACTTGAGGATCATGCCATCAACTTTA
TGAGAAAATGGAGATCATCCTTTGGGATATATGGCGAGCAAGGCATTGAG
TCAATCCACAACATCTTCAATAAGAGCAAGCAAAACTATGTAGGAATGAA
GAAAAGTACAGCTCGACTTGGATCAATGCTTAGTGATCACTATTCTCGTG
TATATCCAAAATCTGTTTCATTTCGCCCTGAAATAAAGAGGAGAAAGGTA
TCAGAAGAATGAATTAGAATGTTGGTTCAGACTCTACCCAAGTATGTTTG
GAGGAATAACCTTGCAGGTTCGCAAGTGCATATGGATAGCATCCAAGTTT
GCAAGACTTTCAAGACATTATTTGACTTGTATGCTGCTTGTCATACTGTT
TTGAATCGCGCAGAGGGAATAGACCCAGACGAAACTGACATTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035303XLOC_035303Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056098-proteinTCONS_00056098-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056098-exon-scaffold_267-1575043694:511329..511513TCONS_00056098-exon-scaffold_267-1575043694:511329..511513Clytia hemisphaericaexon
TCONS_00056098-exon-scaffold_267-1575043694:510697..511043TCONS_00056098-exon-scaffold_267-1575043694:510697..511043Clytia hemisphaericaexon
TCONS_00056098-exon-scaffold_267-1510915933:511329..511513TCONS_00056098-exon-scaffold_267-1510915933:511329..511513Clytia hemisphaericaexon
TCONS_00056098-exon-scaffold_267-1510915933:510697..511043TCONS_00056098-exon-scaffold_267-1510915933:510697..511043Clytia hemisphaericaexon
TCONS_00056098-exon-scaffold_267-1491911889:511329..511513TCONS_00056098-exon-scaffold_267-1491911889:511329..511513Clytia hemisphaericaexon
TCONS_00056098-exon-scaffold_267-1491911889:510697..511043TCONS_00056098-exon-scaffold_267-1491911889:510697..511043Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:510697..511513 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.167308	0.23926	0.373093	0.570463	0.628997	0.444016	0	0.162557	0.391765	0.202952	0	0	0.383879	0.498675	0.666327	0.305974	0	0.142331	0.130167	0	0	0	0.18031	0	1.32019	1.28888	0	0	0.295195	0.288074
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056098 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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