TCONS_00056136 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056136
Unique NameTCONS_00056136
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length178

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056136 ID=TCONS_00056136|Name=TCONS_00056136|organism=Clytia hemisphaerica|type=transcript|length=178bp
CAGGAAGGcactttaagaaatattttacaaacagaTTCTGtagaaaaata
tgtaaataatTCGAAACTAAACAAGATTAAAATGCGAAAACTTATGAGGT
TGGAGGGTGTGGGAAGTGGTTAAGAGATACCAaatagaatattttcaaaa
attcaattcaatactTTTAAAGCCATTG
Run BLAST on NCBI

transcript from alignment at scaffold_267:518957..519134

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056136 ID=TCONS_00056136|Name=TCONS_00056136|organism=Clytia hemisphaerica|type=transcript|length=178bp|location=Sequence derived from alignment at scaffold_267:518957..519134 (Clytia hemisphaerica)
CAATGGCTTTAAAagtattgaattgaatttttgaaaatattctattTGGT
ATCTCTTAACCACTTCCCACACCCTCCAACCTCATAAGTTTTCGCATTTT
AATCTTGTTTAGTTTCGAattatttacatatttttctaCAGAAtctgttt
gtaaaatatttcttaaagtgCCTTCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035338XLOC_035338Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056136-exon-scaffold_267-1491911889:518957..519134TCONS_00056136-exon-scaffold_267-1491911889:518957..519134Clytia hemisphaericaexon
TCONS_00056136-exon-scaffold_267-1510915933:518957..519134TCONS_00056136-exon-scaffold_267-1510915933:518957..519134Clytia hemisphaericaexon
TCONS_00056136-exon-scaffold_267-1575043694:518957..519134TCONS_00056136-exon-scaffold_267-1575043694:518957..519134Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:518957..519134 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056136 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top