TCONS_00056101 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056101
Unique NameTCONS_00056101
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2451

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056101 ID=TCONS_00056101|Name=TCONS_00056101|organism=Clytia hemisphaerica|type=transcript|length=2451bp
AAACAAGTTGCAGATCAAACCTCTGTAACAAATTCTAATACATTGACAAA
ATTAAAGGAAAAGCTtgagaataaaagaaaaagcgacAATGTTACTTTTT
CAAAGGCTGGACACCTCGATCAGTTCAAACATAATACAGAAGTTTTGGAG
AAAATTGATGATGCCATTGAAGCTATCGAAATGGACGTGGAAGGAATAAC
AACTGCTTTAAAGAAAGAGAGATTTTGGGAATTTGAGCAATCTTCCGAAA
GCGTCTCCGTTGCTGGtaagAACTTTAACGCCCCGTTGCAAGACGAATTT
ACTTCACATCACTGTCTCCGTTACAAATGTGTTTTACGTGTCAATGCCGC
TGTGCAACACCTTTGACGTGTCAATGCCCCTGTGCAACACAACTTTTGCG
TCAATGCCCCTGTGCAACGCACTTGAAGGAGCAATCGTTCTCGCTGTGCT
ACAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNCTTTGACGTGTCAATGCCCCTGTGCAACACAACTTTCGCG
TCAATGCCCCTGTGCAACGCACTTGAAGGAGCAATCGTTCTCCAGTTGAT
GATTGATTACTACCTTGAATTCAAGTTCGCAGACGTAAGGTAACATAATT
CTTGACTTAAATTATTGCACTTTAAATTTTCCGAAAGATAATTACGCTCC
AAGTTTGAAAGAGAAGTTAATGgcaattaaaaataaaagcCTCAAACGGA
AAGCCGAAAGTCTACCTACCCTATTAGAAGCAGCTTACGCAAAATCTACT
TTGAGAAAATACAAGCCAGCATGGGAGAAATGGGTATCTTGGGCCGACCC
CTTCGAAGAAATAAACAGTTGTCCTGCGGATCTACTTTACGTCGCCATCT
ACTTAAACGATATCACAAATTCTTTCGCAACTGAAGGCGCACTGACAGCA
GCAATCTTGGACATAGGGTGGGGACANCTTTACGTCGCCATCTACTTAAA
CGATCTCACAAATTCTTTCGCAACCGAAGGCGCACTGACAGCAGCAATCT
TGGGCATAAGGTGGGGACATTTGAATTCAGGTTTTGATTCTCCGACAGAT
CACCAACTTGTTAAGTTAGCACTCGAAGGAGGTAAACGCATCATTGCAGA
GAGGCGATCCCCATCAGACAGACACCGCCGAAAGGAGCCCTTGCCTTCAG
AGCTTATTAGAAACCTCGCAAAAACATATTTCACTTCAACAAATTTAGTC
GAAATTTGCTTTCTTCTCATGGTCATTCTAGAGGTTTTGCAGGACTTCTC
AGAATTAGCGAAATCCTTCAAATTCAGATAAAGGAAATCACTTTTGACAA
TTTCGGTGCAACAGCTTTTCTACCAAATTCAAAAACCGACCAAGTTCGTG
AAGGTAATATCGTTTTCATTAGCAAGACAGGAACAAAATGCTGCCCAATT
TACTGGCTTCGCAAATATTTGTCACTATCCAAATTAAATTACAAACCCGA
GGCTTACCTAATTCTTCATCTTTACAAAACAAAGAGAGGTCACAATGCCC
ATGGTCTTCTTCCGATATCCTACACGACCGCTTTGAAAACTTTCAACGAT
CATCTTTCAAAAGTAACCAATCCTTCCATTTACGGTTTGCACTCATTAAG
ATCAGGAGGTGCATCAGAGGCAGCAAACAATGGTATTTCGGACCGTCTCA
TTTCAAAACACGGTCGTTGGTCATCGAACACTAGCAGAAACACGTATATC
AAAGACAATGCCAAAAAGCGTTATAAATTTTCCGTTCTTTAGGGATTTAG
GCATTCCgacttcctttttctttctcgtgGTAATGCAAGCAAATACCAAA
CAAAAAGTAGAAACAACTATcgttttttattgtttgtttcattTCGAAAA
GGAGAAATAGTGGAGAAACGATGTTTCAAGCGAttgaaaaaagctggaaa
agcaggTTCGCACGGAAAATTAATTATGCATGCGCATCATTAAATCATAA
TTATGATTCGTATGTCTttaaatacaattcaaaattcTAAATCATCCTCG
CTATTGCATTCActcaaaatcatttcaatataCTTTAGCAAACTTCTNtt
aaatacaattcaaaattcTAAATCATCCTCGCTATTGCATTCACTCAAAT
CACATTTTAACATACTTTAGCAAACTTCTCcgaaatttccagattttctc
GTACTATATTTAACCATAAGCCCCTGTATACTCCGGTCAACctttcttta
cttttatgaCATTGGAACAATCGGACGAGCGCTTCTTCCTGGACTTCAAA
CAGATGATCAATTAATGTCTCAGACGATCAACCACCAAGGAATACAATAG
AATATACTAAAAGACGATCGATTACCAAAACAAACGCCGGTCATTGGAGA
TTGACGATCTTATCAACATTCACCACCGACAACTTATCAAACATGGAGTC
G
Run BLAST on NCBI

protein sequence of TCONS_00056101-protein

>TCONS_00056101-protein ID=TCONS_00056101-protein|Name=TCONS_00056101-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MAIKNKSLKRKAESLPTLLEAAYAKSTLRKYKPAWEKWVSWADPFEEINS
CPADLLYVAIYLNDITNSFATEGALTAAILDIGWGXLYVAIYLNDLTNSF
ATEGALTAAILGIRWGHLNSGFDSPTDHQLVKLALEGGKRIIAERRSPSD
RHRRKEPLPSELIRNLAKTYFTSTNLVEICFLLMVILEVLQDFSELAKSF
KFR
Run BLAST on NCBI

transcript from alignment at scaffold_267:528931..542405-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056101 ID=TCONS_00056101|Name=TCONS_00056101|organism=Clytia hemisphaerica|type=transcript|length=13475bp|location=Sequence derived from alignment at scaffold_267:528931..542405- (Clytia hemisphaerica)
AAACAAGTTGCAGATCAAACCTCTGTAACAAATTCTAATACATTGACAAA ATTAAAGGAAAAGCTTGAGAATAAAAGAAAAAGCGACAATGTTACTTTTT CAAAGGCTGGACACCTCGATCAGTTCAAACATAATACAGAAGTTTTGGAG AAAATTGATGATGCCATTGAAGCTATCGAAATGGACGTGGAAGGAATAAC AACTGCTTTAAAGAAAGGTAAGCAATTACTTGAAACCAGGATAAATCATT TAAGGATCGCCGATGCCTAACAGTTAAGGAATTTAAAGCTAATGAATTGA CATCTGGGGAGGCAGAGGAGAAAAGACTAAAGAGGGCAATAAAAAATGCA GAGATTGTTAAAGGCCGTTTTTATAAAAAACAAAAACTTTCCGAAGATTC GGATTATAATAAAGTAATAAGAAATAGAACCGAACAAAGAAGTCGCATGG ACGAAGTAGTATGCTACTCCTGTAAACGTGTCGGACATTACGTATCGCAC TGTCCCTTTCCGAATATAGTATCGCCTTTGTCTCTCCCATACTCAACAAA ATCACATTCATCGTCATCAAAAAATAAAAATTCGTCAAGTTATTCAAAAA GCTCGAAAGACGGTAAAAGTACCTCTGGATAAAAATATTCGTTATCACTT TAAATTTCACAGTCAAGTTGCTTACTAGTGTTGAAAAATTGAAGCGTTAT AATTCAAACGACTTTCCTTAGTATTATTTTATCTTTTATGAACAATTGAA TTTATTGTGTTTGATGTACTTTAATCAAAAGACAGTAATTTCAAATTTTG TAACATCGTTGTTTTCCAAATAACTTTCGCCAATTTGATATCAAGTTTTT GTTCGTTTTTTCGCTTCTCCAGAGAGATTTTGGGAATTTGAGCAATCTTC CGAAAGCGTCTCCGTTGCTGGTAAGATAATGAAATTTTCGCACTTTTGGG AAAAAGATTTGAAAGCATCAAAATTCGCCCTGGGTGTCGTACGTGAAGGC TATAAAATACCCTTTGAATCAAACCCACCACCTTTTTACGCTAAGAACAA TGCGTCCAGTTTAAAGAACGACCATTTTGTCGAAGACAGTATCAAAAAAC TTTTGGAAGACAGCTGTATTGAAAAAGTAGCGGAGCCAACCTACTGCATC AACCCCTTAACCGTAGCAGAAAAAGCTTAGGTTGGTATTAGATCTCAGAC ACGTCAATAAATTCATCAAACCAAAAAAATTCAAATACGAAAATTTAAAA CAAGCTTCAGAGTTAATCGACCAGAACGATTTTTTAATCACTTTCGACCT CAAAAGTGGATACCATCATGTACCGATCAATCCTGTTTTTCGAATCTTTT TGGGATTCGCATGGGAATTCGACGGTGAAATGCAATNATCAATCATATTT TTCGAACCTTTTTGGGATTCGCATGGGAATTCGACGGTAAAATGCAATTT TTTGTGTTCAAAGTTTTGCCATTTGGGTTAAATATAGCATGCTTAGTTTT TACAAAGCTCATGCGACAATTAGTAAAGAGATGGCGTTCGATGGGAATTA AATGCGCGAGGTATCTTGATGACGGTATAGCTGGGGATAGTTCACATTTT TCTTTGATTCGATCAAGAGATAGGATGCTGCAAGACATGCAATCAGCTGG TTTGACTGTAAACTTTGAAAAGTCGAGCCTCGAACCCGAAAAAAGAAAAA CATGGCTAGGTTTCATAATCGAGACTGAAAAAATGAAATTTGAAGTCCCA ATAACAAAAATTCTGAAAGTCCAAAACTTACTTTTAGAAGCTTTAAATTG TGAATTTATTTCAGCTAGAGAAATTTCTAGAATAGCAGGAAATCTTATTT CTATGGCACAAGCTATCGGGCCACTTGTTTATTTATTTACAAAGCAATTG TACAAATTTGTCGAATCCAGTTTCTCTTGGGACAAAAAATGTCTCCTAAC ATTTGATGTAAGACAAGAGCTCGTGTGCCAACGGCACACCACTGGAACCT AATGTAAGTAGTTATGCGTGAGGATATGCGCATGCTAGTTTTTTAAAGTG GGTGTGAGACTTGAAGTGTTCGAATTTGACTTCTGATTTTTTTTAATTTA TATACTTGGATTTGCTTGTTTTTTGGATTATCATGGCAGAAAATCAAGTT GCTCATGTTTACACAGAACAGGAACTCTCAAAGCTGAATAAAGACTCGTT GATAAAAGTTGTACTACAACAGCAATCCATACAAGAACAGTTAAAAGTTT TGAACACAAAAATTGAAAATTTTGAGAAAGTTGTCAATGAATCCAAAGCT GTTGCTGCTGTAGCTCAAAACGTTTCCAATTTACTACAGGGAAGAGTTAG GCAACTTGAATCGGACATTTTGAAAGCTGAACAATATAGCAGGAGGGAAT GTTTGGACATTACTGGGGTGAGTGATGAGATCCAGGACGATGGGCTTGAA GGTAAGGTCTGCGAGATCTTGGAAGGAATCAATGTCAATGTCAATGCTGA ACAAGACATTCAGGCATGCCATAGGTATGGTAGACGGAAGAATGTTATAG TCAAGTTTTCTAACAGGAAAATGGTTGCAAAAATCTTCAAAAATAAATCT AACCTCCCAGCTAACATTTACATAAATGAAACTTTATGTCCTATGAACAA GAAAATTCGTGGGCGATGTGGGATGCTAAAAAGTGCCAGTTTGATTCAAA ATGTGGCCACAAGAAATGGTATGGTTAGAATTAAAAAACTGAACTCGAAT GCATATGTTGACATTTTGCATGAAGATGATTTGACGGACGCTCTTCCTGA CTTCAAATTTCCGTATTGATCAAAAACTCAAAACATAACTTATACATGTA TAAAATGTATACTTTCTGTTTTTCTCTTGATCAAAAATATGTCTCAAAAT CCGCTCTTTTTTTGTTTACATCTGAAATATTGTGAACTTTCGTGTTACAC TTGACACATTAGTCATTATGACTAAGGTAATTAAATATTTTATTAAGTAT GTTTTCAAGAATCTTTGGTCGTGTTCACACTACAGACCTTCCTTAATAAA AATGTAGTTAGGAGAATCTTTTGTTGACTACAATACAGAACGTGCATTTA ACAAAGAGTCGAACGCGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNGAAAAAATTAGAAATAGTGCAAACG GTGTTGTTGATGTGTAAGATGAATGCAGTTAATGAGTAAAACCATTAGAA CAAATATGTTTGCGGATTTCAAGTGATGTACAGGGTGTCCCTAATTAAAG TATCGAGTTTGAACATGCGATTGAGTAGAAAGTTTTATGTGCGTGTTCAC AAAATTGTATTGTACCTCTTTTTTCTTTGTCATTACGATTAATTTATACG TTGTAACTACCTTTTTGTAATAAGCCTGTGTGATGGAGAACGTTCTTATA TTTTAGCGATAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAATA AACCAGTGTATTCATCCATCATAAATCTCTTTGTTTAACTTTGATAGATT TAATTAAGGAAACCTTCCAGTGTGAACGCGCCCTTTGTTCTATTATGATT CTTTATGCATTAAGCATTTCTTTTCTCTTTTTACAACTTTTTCCGGGATT ATCTTTTTCTTATTTTGTTTTAATTTTTGGCTTGGAGAGCATTAAGAGCA AATTTCTTATGTAATGTTGTTTGATGGTTGTTGATAGGAGTTTGTCATGG GGGTAAGTCTTAGTCAATACAGAGCATGCATCGGATATTTCAATATATTA CGCTTAAAATATCGTATGCTTAACCCCTCCTGTAGTTTTTTCATCTTAAT AAATTTCCCTTTTACACTCATATTCTTATGCCTTCTTTTGTCCGGAGATA TTGAGGTTAACCCTGGGCCGGAGAGGAAAACCACGCTAAGCATTTGTCAT TGGAATCTGAATAGCGTTTGGGTTGAAGATTCTATGGGAGATTTTATTAA GATTAAACAACTTTCTGCATTTCTGAACATTCATAAATTCGACANNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 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CGGTATGGATGACGGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATACTCGTG GAGTGTTCCTTGATATTTCCAAAGCTTTTGACAGAGTTTGGCATGATGGT TTAATTTTCAAACTTAAGTCATATGGTGTTTCTGGCTCCCTTCTTCTATT AATCCATAATTTTCTTCACGGGAGACGGCAGCGGGTTGTTCTTGATGGTC AAGCTTCTGAATGGACGGAAGTCTTGGCCGGTGTACCTCAGGGATCTATT CTAGGACCCCTCTTTTTTTGATTTACATTAATGACCTCCCTGAAGGAATC ATTTCCATGATCAAAATTTTTGCTGATGGCTCATCCTTGTTTTCGCTTAT CCTAGACCATATTCGCTGTTCTCAAGAACTGAACAGTGGCATGCAGAAGA TAAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNAGATATCGTATATGATCGTCCTGGTA ATTCTACATTTTCTGAAAAAATCGAGTCTGTTCAATATGATGCTTGTCTT GCAATTACTGGATGCTTCAGAGGAGCATCCAGAGAAAAAATTTACCTTGA GCTAGGCTTTGAAAGCCTGGCAGACAGGCGATTAATTAGAAGACTCGTAT TTTTTTATAAAATAATAAAAGGCTTTGCTCCTGCTTATCTTACGAATATT CTTCCTCCCCAGAGAGGAAGAGCGCAATGCAGGGCGAAGGATAAAACCAA CACTCGAGGTACCTTTCTGTAGAACCGGGCGTTATCGTGCTTCTTTCTTT CCATTTTGCATAAATGAATGGAATAACCTCGGAGATCATATACGAAATCT TCCCACTATTAAGTCTTTCAAGCAAGCTATTCTCCAATTCCTCAGACCCA TTACTAACTCAGTTTTCAGAGCTAGCGACAACGATGGCGTTGATCTTCTT AACCGATTAAGGGTTGGTTTCAGTCATCTTCGTGAGCATAAGTTCAGACA TAATTTTGCAGACACAGTTGACCCCTTCTGCAACTGTCGACAAATTTCAG TAGAAACAACGCAACATTTTCTGATGCATTGCTCTGATTACTGTAACGAC AGACTTGTGATGTTCCACAGCCTTCTTCAACTTGACATAACCTTGTTTCC ATTTAATCCCAAAACATTGTGTAGAATACTTCTTTATGGCGACCCCGATT TTAGCATTGTCCAAAATCATGATATATTGAGCATAACGATCAAATTTATC TGTGATACAAGTCGTTTTGGGGGACCGTTATTTTAGTCTTTACTCTAACT GCTCTCCTAGCTCTTTTTGTTTTGTTTTTTCATTTCTGTTAGTATTTATC CTCTGTAGTTAGTTTTTATTTTCCATTTATTAGTTTATTTATTAATTTAT TGTTAGCTTAGTTTGGGTTCCTTCCTCCTGGCGGTATGATCTGGTGGTCC TTTTGCGGGAGGTTAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNACGAATTTTGGAAAGACAATTTAGAAGTCACGAAGAGCTTTAGAATTA ACACACAACCTGAAGTCACAAAAATCGTTTTTTCGGATGCAAGCGAAACC GGTTACGGGGGTTATGTTGCGGAAAAACTCGGTAACATCATAGCGAAAGG GAACTTTGACCGCGAACTTCTTGCAGTAAAATACATTTTGCTATCATTTC CTAAAATCTTAGAAAACGNTCGACTTACCGCGAACTTCTTGCAGTAAAAT ACATTTTGCTATCATTTCCTAAAATCTTAGAAAACGAAAACATTGAGTGG TTTACCGACAACAATAATATATGTAGAATCATAAATCGAGGTAGCACAAA GCAACACTTGCAAAATCTTGCAATCAAAATTTTAAACATTTGTTTATCGT CCAACATCGAAATTTACCCTACTTGGATCCCTAGAGAGTTAAACGAAATT GCCGATATAATTTCAAAGACCAACGATACAGACAACTGGTCAATTGACAA TGAAACTTTTGATTGTATACTTAAAAACTACGGACAAATTACCATCGACC GATTTTCAGACAATTTAAATAAAAAATGTTTTCGGTTTAACTCCAAAGAA TATTGTCCTGGTACTTCTGCAGTTAATTCTTTTTCGTGCCACTGGGGAAA CCATGAAATTAATTGGCTTTGTCCCCCTCAACATTAGTAGGCAAAACAAT TAAACATTTAAGAAATTGTAAAGGTAAAGGCATACTATTTATCCCCTTGT GGCCATCAGCATACTACTGGCCTTTATTGACATCAAACGGTTTCGAGTTT GAACCTTTTGTAAAACATTTTCTAGTGCTTGATCCTTTCTTTTTCAATTA TTCAAACACCGATTGTGTTTTTGACGGCTTTGCAAATTTTTACTCTTTGG CGTTATTTATTGACATGTCCGCATAATATATTGTGCAAACTTATTGAGCA AGATCTTAACAAATTCTTACTTTATTCTATTTTATGATGGTGACAACTTT AACGCCCCGTTGCAAGACGAATTTACTTCACATCACTGTCTCCGTTACAA ATGTGTTTTACGTGTCAATGCCGCTGTGCAACACCTTTGACGTGTCAATG CCCCTGTGCAACACAACTTTTGCGTCAATGCCCCTGTGCAACGCACTTGA AGGAGCAATCGTTCTCGCTGTGCTACAACTTNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTGACGTGTCAATG CCCCTGTGCAACACAACTTTCGCGTCAATGCCCCTGTGCAACGCACTTGA AGGAGCAATCGTTCTCCAGTTGATGATTGATTACTACCTTGAATTCAAGT TCGCAGACGTAAGGTAACATAATTCTTGACTTAAATTATTGCACTTTAAA TTTTCCGAAAGATAATTACGCTCCAAGTTTGAAAGAGAAGTTAATGGCAA TTAAAAATAAAAGCCTCAAACGGAAAGCCGAAAGTCTACCTACCCTATTA GAAGCAGCTTACGCAAAATCTACTTTGAGAAAATACAAGCCAGCATGGGA GAAATGGGTATCTTGGGCCGACCCCTTCGAAGAAATAAACAGTTGTCCTG CGGATCTACTTTACGTCGCCATCTACTTAAACGATATCACAAATTCTTTC GCAACTGAAGGCGCACTGACAGCAGCAATCTTGGACATAGGGTGGGGACA NCTTTACGTCGCCATCTACTTAAACGATCTCACAAATTCTTTCGCAACCG AAGGCGCACTGACAGCAGCAATCTTGGGCATAAGGTGGGGACATTTGAAT TCAGGTTTTGATTCTCCGACAGATCACCAACTTGTTAAGTTAGCACTCGA AGGAGGTAAACGCATCATTGCAGAGAGGCGATCCCCATCAGACAGACACC GCCGAAAGGAGCCCTTGCCTTCAGAGCTTATTAGAAACCTCGCAAAAACA TATTTCACTTCAACAAATTTAGTCGAAATTTGCTTTCTTCTCATGGTCAT TCTAGAGGTTTTGCAGGACTTCTCAGAATTAGCGAAATCCTTCAAATTCA GATAAAGGAAATCACTTTTGACAATTTCGGTGCAACAGCTTTTCTACCAA ATTCAAAAACCGACCAAGTTCGTGAAGGTAATATCGTTTTCATTAGCAAG ACAGGAACAAAATGCTGCCCAATTTACTGGCTTCGCAAATATTTGTCACT ATCCAAATTAAATTACAAACCCGAGGCTTACCTAATTCTTCATCTTTACA AAACAAAGAGAGGTCACAATGCCCATGGTCTTCTTCCGATATCCTACACG ACCGCTTTGAAAACTTTCAACGATCATCTTTCAAAAGTAACCAATCCTTC CATTTACGGTTTGCACTCATTAAGATCAGGAGGTGCATCAGAGGCAGCAA ACAATGGTATTTCGGACCGTCTCATTTCAAAACACGGTCGTTGGTCATCG AACACTAGCAGAAACACGTATATCAAAGACAATGCCAAAAAGCGTTATAA ATTTTCCGTTCTTTAGGGATTTAGGCATTCCGACTTCCTTTTTCTTTCTC GTGGTAATGCAAGCAAATACCAAACAAAAAGTAGAAACAACTATCGTTTT TTATTGTTTGTTTCATTTCGAAAAGGAGAAATAGTGGAGAAACGATGTTT CAAGCGATTGAAAAAAGCTGGAAAAGCAGGTTCGCACGGAAAATTAATTA TGCATGCGCATCATTAAATCATAATTATGATTCGTATGTCTTTAAATACA ATTCAAAATTCTAAATCATCCTCGCTATTGCATTCACTCAAAATCATTTC AATATACTTTAGCAAACTTCTNTTAAATACAATTCAAAATTCTAAATCAT CCTCGCTATTGCATTCACTCAAATCACATTTTAACATACTTTAGCAAACT TCTCCGAAATTTCCAGATTTTCTCGTACTATATTTAACCATAAGCCCCTG TATACTCCGGTCAACCTTTCTTTACTTTTATGACATTGGAACAATCGGAC GAGCGCTTCTTCCTGGACTTCAAACAGATGATCAATTAATGTCTCAGACG ATCAACCACCAAGGAATACAATAGAATATACTAAAAGACGATCGATTACC AAAACAAACGCCGGTCATTGGAGATTGACGATCTTATCAACATTCACCAC CGACAACTTATCAAACATGGAGTCG

Coding sequence (CDS) from alignment at scaffold_267:528931..542405-

>TCONS_00056101 ID=TCONS_00056101|Name=TCONS_00056101|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at scaffold_267:528931..542405- (Clytia hemisphaerica)
ATGGCAATTAAAAATAAAAGCCTCAAACGGAAAGCCGAAAGTCTACCTAC
CCTATTAGAAGCAGCTTACGCAAAATCTACTTTGAGAAAATACAAGCCAG
CATGGGAGAAATGGGTATCTTGGGCCGACCCCTTCGAAGAAATAAACAGT
TGTCCTGCGGATCTACTTTACGTCGCCATCTACTTAAACGATATCACAAA
TTCTTTCGCAACTGAAGGCGCACTGACAGCAGCAATCTTGGACATAGGGT
GGGGACANCTTTACGTCGCCATCTACTTAAACGATCTCACAAATTCTTTC
GCAACCGAAGGCGCACTGACAGCAGCAATCTTGGGCATAAGGTGGGGACA
TTTGAATTCAGGTTTTGATTCTCCGACAGATCACCAACTTGTTAAGTTAG
CACTCGAAGGAGGTAAACGCATCATTGCAGAGAGGCGATCCCCATCAGAC
AGACACCGCCGAAAGGAGCCCTTGCCTTCAGAGCTTATTAGAAACCTCGC
AAAAACATATTTCACTTCAACAAATTTAGTCGAAATTTGCTTTCTTCTCA
TGGTCATTCTAGAGGTTTTGCAGGACTTCTCAGAATTAGCGAAATCCTTC
AAATTCAGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035305XLOC_035305Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056101-exon-scaffold_267-1575043694:542189..542405TCONS_00056101-exon-scaffold_267-1575043694:542189..542405Clytia hemisphaericaexon
TCONS_00056101-exon-scaffold_267-1575043694:541481..541533TCONS_00056101-exon-scaffold_267-1575043694:541481..541533Clytia hemisphaericaexon
TCONS_00056101-exon-scaffold_267-1575043694:528931..531111TCONS_00056101-exon-scaffold_267-1575043694:528931..531111Clytia hemisphaericaexon
TCONS_00056101-exon-scaffold_267-1510915933:542189..542405TCONS_00056101-exon-scaffold_267-1510915933:542189..542405Clytia hemisphaericaexon
TCONS_00056101-exon-scaffold_267-1510915933:541481..541533TCONS_00056101-exon-scaffold_267-1510915933:541481..541533Clytia hemisphaericaexon
TCONS_00056101-exon-scaffold_267-1510915933:528931..531111TCONS_00056101-exon-scaffold_267-1510915933:528931..531111Clytia hemisphaericaexon
TCONS_00056101-exon-scaffold_267-1491911889:542189..542405TCONS_00056101-exon-scaffold_267-1491911889:542189..542405Clytia hemisphaericaexon
TCONS_00056101-exon-scaffold_267-1491911889:541481..541533TCONS_00056101-exon-scaffold_267-1491911889:541481..541533Clytia hemisphaericaexon
TCONS_00056101-exon-scaffold_267-1491911889:528931..531111TCONS_00056101-exon-scaffold_267-1491911889:528931..531111Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056101-proteinTCONS_00056101-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:528931..542405 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (6.0735 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.092284 6.0735 7.60639e-06 2.76229e-05 0 0 0 0.13853 0.960264 0.487257 1.41991 2.28549 1.1792 3.98532 1.87984 0.881112 1.41005 0 1.12645 0 0 0 8.93162e-06 3.03468e-07 0 0.447479 0.674301 1.44957 0.293778 8.28115e-05
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010998Integrase_Lambda-type_N
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056101 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
20040060080010001200140016001800200022002400Sequence
Match NameE-valueIdentityDescription
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