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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056103 ID=TCONS_00056103|Name=TCONS_00056103|organism=Clytia hemisphaerica|type=transcript|length=1078bp
TCCATATCAAGTTTCTCTCACGGAAGAAGTTCAACAGAAGTTGACACATC
AACATGAAATCAATAATAGCTTTACTGCTACTGGCCGTAGCTGCTAACGC
ACAAAATTTGACATGGCCAAAATACCCGGAACAATTCAAATTCACAACAA
GTGGACCTATCCCTGGGTACACATGTATTCAGATCCAAGAACCTTCTGAT
CCTGTGTGGGCTCgtcaaacaaattatttttgtcaCGAAGCTGGAGAAAA
CATTCGCAATATCGGAATGAGATGGTCATTTACAGGCAGAATCTCTACCA
TGAAGTGTCGGCCAGTCTATGAACCGTCAGAGTCTGCAAAATACAAATGG
CTTGACAACTTCATTTGTGTACCAATAGATGCTCCTTACGAATTCCAATT
TTTCAACTACGTTCCGCGAATGAATTACAGATGTCGTTGTCTCCAATGGT
ACAATGCTAAAGATCCGGACACATGGGCAGATAATTTCTTGTGTGACTGG
AGAGTTTCTTGCTAGTctatctaatttttttaaatcattttattACTGGA
TTATTACTGGAAGACaataaaaatacttttgaaattAACCTTACTAGTTT
TCGTCAATTTTGGCGATGGGGTCATCATTTGGGCCCTTTTGGTACTGGAA
TCTGGACACCTATATCTCATGATCGGCTTCTCCGTTTACTTTCAAATTAG
GCATGTGATACCTTGACAATAACGCCTTGAAATTAACCtaataagatttt
gtcaattttggtgatgacgtcatcatttgagTCCTTTTTGGTACTGGTAT
CCGGAAACCTATGCCTCGTGATGGGCTTTTGAGATAACGAACGAGATAAC
TCCTAAACCTATCAATTTTCGGTTCAGGTCTTAGGTTGCTTTGCATTCTA
Gctcattctttgaaaaaaatctgctttgacaacccctgatattatactat
attcatgcttgggtcaagggctatcgtttgcaATTCTTAGATTATTTAAA
AAGCTCCTACTTTATGTGACAGAGAAAATTCTTTTGGTTGATTTCAGGGC
TTGAGCTTTAGCTTTAGAAAGAAATGTG Run BLAST on NCBI protein sequence of TCONS_00056103-protein >TCONS_00056103-protein ID=TCONS_00056103-protein|Name=TCONS_00056103-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MKSIIALLLLAVAANAQNLTWPKYPEQFKFTTSGPIPGYTCIQIQEPSDP
VWARQTNYFCHEAGENIRNIGMRWSFTGRISTMKCRPVYEPSESAKYKWL
DNFICVPIDAPYEFQFFNYVPRMNYRCRCLQWYNAKDPDTWADNFLCDWR
VSC Run BLAST on NCBI transcript from alignment at scaffold_267:558320..559642- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056103 ID=TCONS_00056103|Name=TCONS_00056103|organism=Clytia hemisphaerica|type=transcript|length=1323bp|location=Sequence derived from alignment at scaffold_267:558320..559642- (Clytia hemisphaerica)
TCCATATCAAGTTTCTCTCACGGAAGAAGTTCAACAGAAGTTGACACATC
AACATGAAATCAATAATAGCTTTACTGCTACTGGCCGTAGCTGCTAACGC
ACAAAATTTGACATGGCCAAAATACCCGGAACAATTCAAATTCACAACAA
GTGGACCTATCCCTGGGTACACATGTATTCAGATCCAAGAACCTTCTGAT
CCTGTGTGGGCTCGTCAAACAAATTATTTTTGTCACGAAGCTGGAGAAAA
CATTCGCAATATCGGAATGAGATGGTCATTTACAGGTTCGTTAACTTATA
CTAACATTTATTTCTTTTAGATTCGCATTCCAGAAATAGTCCGTGCCCCC
CCCCCTCTGTTGAGGATATTGGATATCCAGGGGGTTAACGATTTTTGTTA
AAAAGTGGATATCCAGGGGGTTAGATATCTACAAGGGAGCGGATATCCAG
GGGTAAAGTAAATTGCTAATGAAAATCAAATTGTTCTCTGTACCTGTATA
TAATTAAATTTTTCTTGAATTTTTCTTTAGGCAGAATCTCTACCATGAAG
TGTCGGCCAGTCTATGAACCGTCAGAGTCTGCAAAATACAAATGGCTTGA
CAACTTCATTTGTGTACCAATAGATGCTCCTTACGAATTCCAATTTTTCA
ACTACGTTCCGCGAATGAATTACAGATGTCGTTGTCTCCAATGGTACAAT
GCTAAAGATCCGGACACATGGGCAGATAATTTCTTGTGTGACTGGAGAGT
TTCTTGCTAGTCTATCTAATTTTTTTAAATCATTTTATTACTGGATTATT
ACTGGAAGACAATAAAAATACTTTTGAAATTAACCTTACTAGTTTTCGTC
AATTTTGGCGATGGGGTCATCATTTGGGCCCTTTTGGTACTGGAATCTGG
ACACCTATATCTCATGATCGGCTTCTCCGTTTACTTTCAAATTAGGCATG
TGATACCTTGACAATAACGCCTTGAAATTAACCTAATAAGATTTTGTCAA
TTTTGGTGATGACGTCATCATTTGAGTCCTTTTTGGTACTGGTATCCGGA
AACCTATGCCTCGTGATGGGCTTTTGAGATAACGAACGAGATAACTCCTA
AACCTATCAATTTTCGGTTCAGGTCTTAGGTTGCTTTGCATTCTAGCTCA
TTCTTTGAAAAAAATCTGCTTTGACAACCCCTGATATTATACTATATTCA
TGCTTGGGTCAAGGGCTATCGTTTGCAATTCTTAGATTATTTAAAAAGCT
CCTACTTTATGTGACAGAGAAAATTCTTTTGGTTGATTTCAGGGCTTGAG
CTTTAGCTTTAGAAAGAAATGTG Coding sequence (CDS) from alignment at scaffold_267:558320..559642- >TCONS_00056103 ID=TCONS_00056103|Name=TCONS_00056103|organism=Clytia hemisphaerica|type=CDS|length=924bp|location=Sequence derived from alignment at scaffold_267:558320..559642- (Clytia hemisphaerica)
GCAGAATCTCTACCATGAAGTGTCGGCCAGTCTATGAACCGTCAGAGTCT
GCAAAATACAAATGGCTTGACAACTTCATTTGTGTACCAATAGATGCTCC
TTACGAATTCCAATTTTTCAACTACGTTCCGCGAATGAATTACAGATGTC
GTTGTCTCCAATGGTACAATGCTAAAGATCCGGACACATGGGCAGATAAT
TTCTTGTGTGACTGGAGAGTTTCTTGCTAGATGAAATCAATAATAGCTTT
ACTGCTACTGGCCGTAGCTGCTAACGCACAAAATTTGACATGGCCAAAAT
ACCCGGAACAATTCAAATTCACAACAAGTGGACCTATCCCTGGGTACACA
TGTATTCAGATCCAAGAACCTTCTGATCCTGTGTGGGCTCGTCAAACAAA
TTATTTTTGTCACGAAGCTGGAGAAAACATTCGCAATATCGGAATGAGAT
GGTCATTTACAGGCAGAATCTCTACCATGAAGTGTCGGCCAGTCTATGAA
CCGTCAGAGTCTGCAAAATACAAATGGCTTGACAACTTCATTTGTGTACC
AATAGATGCTCCTTACGAATTCCAATTTTTCAACTACGTTCCGCGAATGA
ATTACAGATGTCGTTGTCTCCAATGGTACAATGCTAAAGATCCGGACACA
TGGGCAGATAATTTCTTGTGTGACTGGAGAGTTTCTTGCTAGATGAAATC
AATAATAGCTTTACTGCTACTGGCCGTAGCTGCTAACGCACAAAATTTGA
CATGGCCAAAATACCCGGAACAATTCAAATTCACAACAAGTGGACCTATC
CCTGGGTACACATGTATTCAGATCCAAGAACCTTCTGATCCTGTGTGGGC
TCGTCAAACAAATTATTTTTGTCACGAAGCTGGAGAAAACATTCGCAATA
TCGGAATGAGATGGTCATTTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056103-exon-scaffold_267-1575043694:559358..559642 | TCONS_00056103-exon-scaffold_267-1575043694:559358..559642 | Clytia hemisphaerica | exon |
| TCONS_00056103-exon-scaffold_267-1575043694:558320..559112 | TCONS_00056103-exon-scaffold_267-1575043694:558320..559112 | Clytia hemisphaerica | exon |
| TCONS_00056103-exon-scaffold_267-1510915933:559358..559642 | TCONS_00056103-exon-scaffold_267-1510915933:559358..559642 | Clytia hemisphaerica | exon |
| TCONS_00056103-exon-scaffold_267-1510915933:558320..559112 | TCONS_00056103-exon-scaffold_267-1510915933:558320..559112 | Clytia hemisphaerica | exon |
| TCONS_00056103-exon-scaffold_267-1491911889:559358..559642 | TCONS_00056103-exon-scaffold_267-1491911889:559358..559642 | Clytia hemisphaerica | exon |
| TCONS_00056103-exon-scaffold_267-1491911889:558320..559112 | TCONS_00056103-exon-scaffold_267-1491911889:558320..559112 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_267 | supercontig | scaffold_267:558320..559642 - |
Blast
The following BLAST results are available for this feature:
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