TCONS_00056143 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056143
Unique NameTCONS_00056143
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length163

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056143 ID=TCONS_00056143|Name=TCONS_00056143|organism=Clytia hemisphaerica|type=transcript|length=163bp
TGTTAAGTGCGGTTGTGTATGAATTCGTAAACCCCACTTTGTTGAAccat
ttgaatgattttttcttaGCTCCTGCAGCAATGAGAAGCTGATCGTTTCT
AGTAGAGAAAgcatatttttaatattttacttgattttgtaaattttaca
tcgaatattttta
Run BLAST on NCBI

transcript from alignment at scaffold_267:709602..709764

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056143 ID=TCONS_00056143|Name=TCONS_00056143|organism=Clytia hemisphaerica|type=transcript|length=163bp|location=Sequence derived from alignment at scaffold_267:709602..709764 (Clytia hemisphaerica)
taaaaatattcgatgtaaaatttacaaaatcaagtaaaatattaaaaata
tgcTTTCTCTACTAGAAACGATCAGCTTCTCATTGCTGCAGGAGCtaaga
aaaaatcattcaaatggTTCAACAAAGTGGGGTTTACGAATTCATACACA
ACCGCACTTAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035345XLOC_035345Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056143-exon-scaffold_267-1491911889:709602..709764TCONS_00056143-exon-scaffold_267-1491911889:709602..709764Clytia hemisphaericaexon
TCONS_00056143-exon-scaffold_267-1510915933:709602..709764TCONS_00056143-exon-scaffold_267-1510915933:709602..709764Clytia hemisphaericaexon
TCONS_00056143-exon-scaffold_267-1575043694:709602..709764TCONS_00056143-exon-scaffold_267-1575043694:709602..709764Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:709602..709764 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056143 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top