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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056148 ID=TCONS_00056148|Name=TCONS_00056148|organism=Clytia hemisphaerica|type=transcript|length=970bp
GACAATAGTTTTTATTTCTTCCACCAGCACTGTAGTCAAAGCAAGCTACG
AATTACAATCTCTGATAAATACTTTGTGGAAAGAAGACACCAACCGATTA
GTCTTTGGTAAAGACATTCGTTTGAATTACCAAAACCAAGCTTCATGGTC
GACAGCCAGAGATGTTTCATACAAACCATTGTTTTATTCGGTCAACACTA
ACGTGTTCAGTAAACCAACGTTTAGAGcatTCATTGCCTTATTGGACAAT
TATGAATCAGACACGTACAGCAGAGAATCTGTCCCAACATCAGAAATCAA
CGAAAATTATCATTTCTTGAATGAAGTATTGAAAACAAATGCTATGAAGA
AAGTTCACGAGTATTTGAGACGAAAGAACAAAGCTCCTTACTCTTCTAGT
CAATTTAAGTCAGCTTTATATGACTTGTGGTTCCAAATGTACTATCGATC
AAGCGTTCGTGGTTCAAGTGGTTTTGAACACGTGTTTGTTGGAGAAACAA
AATCTGATGGACAAGTATCTGGATTTCATAACTGGATTCAATTTTACTTG
GAAGAGAAAAATCGCAATTTGAATTATTATGGATATCTCAAGAAAAGTAG
CTCGAGTCCATATTTGAGTATTGTCAAATACACATggcaaaagaaaatca
aacatATTGGCTCTTCCTTTTATGGTACTTCACCTGAATTCGAATTTGCG
TTATACAGCTTGGTGTACATGATGGGTTATGAAAGACTTCAATTCTCATT
GGACGGCATGCAAGTCAAAATCACGTGTTTTGGAATGAACCGAAATCGTA
ATATCGGAACTTGTTATCCCGATCTCGTTTAGAGAGACtttcttttaagt
tttttgatatttggttctttttaataattctgAATAAGCTGAAGATAATT
CGTTTTCATATCGttctttaaaattgtttaaggctgaaaatattctttta
ttcGAGCTTTAAcctctttc Run BLAST on NCBI protein sequence of TCONS_00056148-protein >TCONS_00056148-protein ID=TCONS_00056148-protein|Name=TCONS_00056148-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
TIVFISSTSTVVKASYELQSLINTLWKEDTNRLVFGKDIRLNYQNQASWS
TARDVSYKPLFYSVNTNVFSKPTFRAFIALLDNYESDTYSRESVPTSEIN
ENYHFLNEVLKTNAMKKVHEYLRRKNKAPYSSSQFKSALYDLWFQMYYRS
SVRGSSGFEHVFVGETKSDGQVSGFHNWIQFYLEEKNRNLNYYGYLKKSS
SSPYLSIVKYTWQKKIKHIGSSFYGTSPEFEFALYSLVYMMGYERLQFSL
DGMQVKITCFGMNRNRNIGTCYPDLV Run BLAST on NCBI transcript from alignment at scaffold_268:103111..111256+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056148 ID=TCONS_00056148|Name=TCONS_00056148|organism=Clytia hemisphaerica|type=transcript|length=8146bp|location=Sequence derived from alignment at scaffold_268:103111..111256+ (Clytia hemisphaerica)
GACAATAGTTTTTATTTCTTCCACCAGCACTGTAGTCAAAGCAAGCTACG
AATTACAATCTCTGATAAATACTTTGTGGAAAGAAGACACCAACCGATTA
GTCTTTGGTAAAGACATTCGTTTGAATTACCAAAACCAAGCTTCATGGTC
GACAGCCAGAGATGTTTCATACAAACCATTGTTTTATTCGGTCAACACTA
ACGTGTTCAGTAAACCAACGTTTAGAGGTAATTTATTTAACATTCGACAA
TACATTTTACAAAAATGTGAGATTTGTTAGAACCTAGAGTAGGGAGAGGG
ATTTTTCCCCACTTTCAAGGCATTATGCACCACTCATAATTAACTAAAAT
GATCGCACATTCACTCTTGAAAGGAGGTATTTTTAAGTCTATTCCAGAAA
TTTCGAAAGAtgatttcaaagaattttgctAACATTTTAAATCCCCCTTC
CTAGATTAACCTCCcctctttttgaaaacttcGCCCCTCCTGCGATTTTC
AGGACATCTCTACCCAGGGAGGAGGTTTCGAACTATGATGATGACATATT
ATTGACTCCCACTAGGTAGAGGGTTTCTACCCTGATAAACTCAAACCCAT
CCTACTAGTATGTTTACGTTTTAAACGATGcatcatttttggacctacct
ggaggtcctataaattaacctttgtccgtccgttcgttcgtccgtccgtc
tgttaccagcttttctcgggattggctcattaattttttctgatttttgg
cacaaagatgcaaaacggcaatgcccaaaatgtgacagagcccgattttt
gaaaaaaaataaattttccagccgccggaaaaactggttttttggcattt
tctcgagattttatcattagtgttttctgattttatgctcaaagatgcgt
attagcaatgcccaaaacatggctgagtccgatttttgaaaaaaaaaatt
ttcctgccgaaaatgccagaaatatgccggagatcgccgtttttctggat
tttcattggacattttccttataattggttgtttgttcattaaaaaatat
tattaatagTAATGCCCATCATCAAGCATGtctcaattttcaataaaatt
gatttttgaagccggaactatttaaaaatcgcctgaacaacctattttcg
ccggaaagacagtatttcttgaatttctcgatctgtactttatatttttt
tatgaaattttgcacactgatgcaaaatgacaatacctaaaatgtgacgg
agcccgatttttgaaaaatatttttttcggccgaaaatgccggaaatata
ccagaaaaaccggtttttttatattttttcgaattttaatccttagtttt
ttcagattttttgcagaaagatgcgtattcgcaatgctcaaaacatgacc
gagttcgattttttgagaattttttttctcgaaatttccgtttttgcaga
ttttcattggactttttcctaacatttctttgttttttctcaacaaaaaa
aaaacatcgtTGATGCAattcccaccatcaagcatgattcgattgtcaat
aaaactgatttccgcaaccggaactttctatttcttttttcccttctccc
cttccctctccccgtcaacaatcaatgatgaaatttaacgcATTATGCCT
TTTCGCTAAACATTATATTTTCTAACGGATTGTTTaccgtttttctcctt
attgctatctaactttcatcatcaggtaggtccattcagcatctagcttg
tctttctttttttcagcatTCATTGCCTTATTGGACAATTATGAATCAGA
CACGTACAGCAGAGAATCTGTCCCAACATCAGAAATCAACGAAAATTATC
ATTTCTTGAATGAAGTATTGAAAACAAATGCTATGAAGAAAGTTCACGAG
TATTTGAGACGAAAGAACAAAGCTCCTTACTCTTCTAGTCAATTTAAGTC
AGCTTTATATGACTTGTGGTTCCAAATGTACTATCGATCAAGGTAATGGG
TTTCAAGAGAATTGAATTCTAAATCTCTTTAACTACTCAATTTAgcttac
ttttttttaaatattactGTTTTACTACTACACatgactctctaattcga
tctgcAAAGGATCAATAATTCTCTTCGAACTAAAGAAAGGGTCGAATTAT
AAACGAATTTCCATCTGAGGGGAATGCTTCAGTGCTTCAGTTCGAGTTAC
AgggatttgataaaaaaaggttGACTAAACTTtcattttccataaaaaaa
aacaaagaaaatatttgactcgatattcaaaatttatatAATCTACTACT
TTTTGCTACTGTCCACTAACGACTCCCAGCCGggacacaacgtcaaaaca
acgtccatgtgacattaataacgtccaaataacgttatttgaacgttaaa
ataacgttgtgtgccagctgggctatACAGtccttttttgctcagttttc
CTACCACGATTCCATAATGAACAGTATGTACACAAACATTTTTCTGTGGC
TTTCAGCGTTCGTGGTTCAAGTGGTTTTGAACACGTGTTTGTTGGAGAAA
CAAAATCTGATGGACAAGTATCTGGATTTCATAACTGGATTCAATTTTAC
TTGGAAGAGAAAAATCGCAATTTGAATTATTATGGATATCTCAAGAAAAG
TAGCTCGGTAAGAAAATACTTTGTCGACTGCTTATTATAGAAATAGCAGT
ATCTGCCGCTATAGGAGACGATAGATTCTCGGTTATTCGAAACcctgttg
tgcgcagatttgtaatactttctgcgcagatttgtaatacctgcgcagat
ttgtaataaactttgcgcaaatttgtaatacttgagctgcgcagaaatgt
aatacttctctgcgcagatttgtaataccagcgcagatttgtaataccag
cgcagatttgtaatacctgcgcagatttggaataaactttgcgcaaattt
gtaatacttgagctgcgcagaaatgtaatacttctctgcgcagatttgta
atttggaattgatattttcattggtaACTAAATTCTATTCTGcgcagggg
ggggtcaagcagttagtacaagacatcatgcctactgagtgattctttgg
aggaaagaggccacaccaccaccctttgacAGTTAGTATGAAATATACTA
AATGATTTCAAAGGAAATTCACTAAGGAccaccccttaaaacctatcAAA
CGAGAGtgtgatatttactttttgtcAAACCATGTtcccaaaattgtttt
gaaacagTTGGTATGATGAattaaaatgaatcaaaaattttattttaaca
caaCGCTGTACAGCGACATATGTACAAGAGTTTCAAATAACGAAGTACTT
CTCAATTGATACAATAATGAAACACCGTAaaccaaaaacataaacataat
aTGTAGCGTTCAATCAAGGCAGANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNACAATTTCAAAATCGATCTAAGTCAAGAAAATAGTAGCTTCAATGTTC
TACAGATTTAACTTAGCTTATCAAATCTAAACAGATAAAAAGGACAATTT
CAGCGTCACTACTTTTTGTAAGTTTCATATAAATTGTTTTATAAACTACA
TTATACGATTTCAAAATATATGAACTCCCATACACGCcgtaaaactaaaa
gaaaaaagtaaaaccaAAATAATTGTGTCTTGGATTTTAAAATTGTAGGC
ATCCTTAGGATTATGCAATCAACTTCTTAGTTTTTGGAAAACCATCCATG
CATTGATTTCCCTGATTGCttttagtatttatttttaatatttttctaga
aaaggtaaaaaagtaGCACTTAGTATTCATTTGTACTAACTGTTTTCCTA
GATTTTTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCTAACTGTTTTCCTAGATTTTTTACTTGACACCACC
CTAGCAGTCACTTAGTACCATcaagtactaactgatttttgaaaattttg
taggtataccaccacggtactcaccggcatgatgtcttgtactaactgct
tgacccccccctgttcTGCGaacaaaatgcattaaaaaagacttagaaaa
taataCCCAAATAAAGTTGTGATTATTGAGTACATCgaataaataatcaa
ttaatatttcttttctaagcagtgcttttataagaaatttatctgGTAAT
ATGAATATTGTTTATGAGAATAGcgcggaaataattttttgtaagaactg
cttttataagaaactaatcaataactcgtaaaataaaaattatttctcgt
cggtaattgtttatttcgaagtaaacaaggtacgaagaataacatgaaca
tatttattttttataagcactgcttttataagaaactaaccaataactcg
taaaacaaaaattatttcttgtcggtaattgtttatttcgaagtaaacaa
ggtacgaagaataacatgaacatatttatttttataagcactttgttatg
aaaaacaattaatgatataaaaatatttttgtcaacattttatcatttca
agaggtacttaaagtctattcacgataagtgtgcactcttttttcattta
cctataacttttgaaggaattcttcaatctttacaaatttggtatcattg
gaaagatattagtgaatggaacaatttgaaataaaaaaatctttaaataa
attctaaaaacgaagatgaaaatgaagaagaaaaaaatgaagatcttgta
caaaggtgctataactatcattttcactgaagtgaatccttgattatcgt
acattatcactgtgaaaaaatttctcaaaaataatcattcaatcaataga
tatcaagcaaagttataagctgattgacgtctaaaaacgctgttttctgc
tgttttttggggtcaaccacttattaactttgaataaatattttagtaaa
atttctttacagtgatgatctcctaagattaaagaatctctccagtgatt
atgaaagttatagcacttttctacaagatcttcatttttttcttcttcat
tttcatcttcgtttttagaatttttttaaagatttttttatttcaaattg
ttccactcacaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNccctccaacgataccaaatttttaaagat
tgaagaattccttcaaaagttataggtaaaagaaaaaagagtgcacactt
atcgtgaacagactttagtaccAAAATTGATGAACAATTTATAAGATGAT
ATGATGAGAAAATACTGATTTGCTCTAAAACCACCTTCTACCTAGCTAGG
AAACCTGTCCCCTCTGACTGGATTTCTTTTATAACCTTTCATAGCCCCTG
CATTACATTACAGCAAGATATCTcaagtaaaattattttgagttaaCTTT
CTTTCAATAAGAGTTTTATTTGATGGTTGAAGCTTCggtatgttttttgt
tgttgttagatagaaaaaatacataaagatgaaaaagaaaattattggaa
caatttccattagattaaaagatattgattcgtttcttataaagttgatg
cttataagaaaaatgacaatattgaaattactcaaaatcccatgtttgta
ttgattcgtttcttataaagttgatgcttataagaaaaatgacaaTATTG
AAGTTACTCAAAATCCcatgtattgaaagaaccaactgccaaaagccaat
tttcattagattaaaatatattgatttgtttcttataaagttgatgctta
taagaaaaatgaaaatatcgaaattgttcaaaatcccatgtttgtattga
ttcgtttcttataaagttgatgcttataagaaaaatgaaaatatcgaaat
tgttcaaaatcccatgtttgtattgaaagaaccaactgccgaaagccaat
ttccattagattcaaagatattgattcgtttcttataaagttgatgctta
taagaaaaatgaaaatgcttaaaattattcccaatccatgtttgtattga
atgaagcaactgccaaaagccaattttcattagattaaaatatattgatt
cgtttcttataaaactAATGTTCATACTAAAGATATACAACCTTTGTCTT
CGTGGGAAACATAGGCCCTCgaagtaaaaatctaaattccaaattacaaa
tctaaaatttattacaaatctgcgcaggtattacaaatctgcgcagaaag
tattacaaatctgcgcaggtattacaaatctgcgcaagtattacaaatct
gcgcacaacaaaCCCCACTGACTCGAAAATTTTGGTTGTTCGTGGCTCCC
CCCTTTGGATTTGCTTATTCAAAATTCCATTGGTTATCGGAAGTtaaagt
tatttcaaaatttcataattttaagcatttttgcaaaatttttgctCGTT
ATTTTAATTTGATTGTGAAAATCAACCACAAGGAGCATTTAAATTGAATT
TTCGGCAGAAATAACTTTTTCTGACATTTCGCACTGTTTGTTTTTCAAAG
TGAATCcctaccccccccctgggacGTTGGATATCATGAGCTCTACTTGT
GTGGTTTGCAAGTAGATTAAAGAAAATAGTAGATTATTGTGGAACTGTTT
TTACTGACCAAAATTTGCTTGGTATAAAATTTTGATCGAACTTTTGGAAC
CACTCTTAATGAAAATGGATGGTTCAAATTACGTGATGCCGAATCATTGG
TCTAAacatcgaaataatcaaaagaaAGGCGGGCCgggaaatttaaaatt
tttggaatagATATATGATTTCTGCCGGATGTTAATGCCTGGTATTTGCT
TTTAGACAGTCATCAGATTTCTAATTCTGTGTACTCAAAGTATGCCTTtt
ggaaaaactttgaaagCTTTGCTTTATGTATCAGAGCggcttataaagtt
ataaaggTTAACGAGGCATTTTTAATACAGTCTCGAACTAAACAtgtgat
tttttaaaagaatatttcCGACGTCGAATTAGCAAGAAATTACTTTTTTC
ACCTATTCGAAAAtagaaataagtaaaaaaaaattgttttgaacaCGAGA
AATTGAATTTAATCTGGCACAGAATCGAACATAAGCCGGTTCATGAAAGC
TTATGTAATAGGCTTTACCACTTCCACTTATTTCTTTCGGCAAGTAAACG
TATGAAAATATTAATCATGTGCTAAAATGTCTTCTACCAAAATAAAAGAA
CGAAAAGAAAGACTTTTGACTGTAAGATGAAAAAGGGGACTAGACACAAA
CTGCCTAGAATTAGctgtcaagttttttttttggggggggggggcagttg
CTGCCTGGCTGTAATTTGTATCGATAGTCTTTAACCAGTTGAAGGCTATT
TACAAAACTTTACCCTTCGTttgttttaagattttttcgcACTCATGTTC
TGTTAATGCAGTTGAAAAGATACTCGAAATTACAGTACTTTTAATAAAGT
TTCTTTGTTGCGGAATCCATATACCTGAAAGCCAGAAAAACTACTTCACT
GAGCTTGAGCAATTCCTCTCAGTCAGATTTTgctaattttcaaatttgaa
ctTATCCTTTTTATGTTCCTTTTTTTTCAGAGTCCATATTTGAGTATTGT
CAAATACACATggcaaaagaaaatcaaacatATTGGCTCTTCCTTTTATG
GTACTTCACCTGAATTCGAATTTGCGTTATACAGCTTGGTGTACATGATG
GGTTATGAAAGACTTCAATTCTCATTGGACGGCATGCAAGTCAAAATCAC
GTGTTTTGGAATGAACCGAAATCGTAATATCGGAACTTGTTATCCCGATC
TCGTTTAGAGAGACtttcttttaagttttttgatatttggttctttttaa
taattctgAATAAGCTGAAGATAATTCGTTTTCATATCGttctttaaaat
tgtttaaggctgaaaatattcttttattcGAGCTTTAAcctctttc Coding sequence (CDS) from alignment at scaffold_268:103111..111256+ >TCONS_00056148 ID=TCONS_00056148|Name=TCONS_00056148|organism=Clytia hemisphaerica|type=CDS|length=3324bp|location=Sequence derived from alignment at scaffold_268:103111..111256+ (Clytia hemisphaerica)
ACAATAGTTTTTATTTCTTCCACCAGCACTGTAGTCAAAGCAAGCTACGA
ATTACAATCTCTGATAAATACTTTGTGGAAAGAAGACACCAACCGATTAG
TCTTTGGTAAAGACATTCGTTTGAATTACCAAAACCAAGCTTCATGGTCG
ACAGCCAGAGATGTTTCATACAAACCATTGTTTTATTCGGTCAACACTAA
CGTGTTCAGTAAACCAACGTTTAGAGcatTCATTGCCTTATTGGACAATT
ATGAATCAGACACGTACAGCAGAGAATCTGTCCCAACATCAGAAATCAAC
GAAAATTATCATTTCTTGAATGAAGTATTGAAAACAAATGCTATGAAGAA
AGTTCACGAGTATTTGAGACGAAAGAACAAAGCTCCTTACTCTTCTAGTC
AATTTAAGTCAGCTTTATATGACTTGTGGTTCCAAATGTACTATCGATCA
AGCGTTCGTGGTTCAAGTGGTTTTGAACACGTGTTTGTTGGAGAAACAAA
ATCTGATGGACAAGTATCTGGATTTCATAACTGGATTCAATTTTACTTGG
AAGAGAAAAATCGCAATTTGAATTATTATGGATATCTCAAGAAAAGTAGC
TCGAGTCCATATTTGAGTATTGTCAAATACACATggcaaaagaaaatcaa
acatATTGGCTCTTCCTTTTATGGTACTTCACCTGAATTCGAATTTGCGT
TATACAGCTTGGTGTACATGATGGGTTATGAAAGACTTCAATTCTCATTG
GACGGCATGCAAGTCAAAATCACGTGTTTTGGAATGAACCGAAATCGTAA
TATCGGAACTTGTTATCCCGATCTCGTTTAGACAATAGTTTTTATTTCTT
CCACCAGCACTGTAGTCAAAGCAAGCTACGAATTACAATCTCTGATAAAT
ACTTTGTGGAAAGAAGACACCAACCGATTAGTCTTTGGTAAAGACATTCG
TTTGAATTACCAAAACCAAGCTTCATGGTCGACAGCCAGAGATGTTTCAT
ACAAACCATTGTTTTATTCGGTCAACACTAACGTGTTCAGTAAACCAACG
TTTAGAGcatTCATTGCCTTATTGGACAATTATGAATCAGACACGTACAG
CAGAGAATCTGTCCCAACATCAGAAATCAACGAAAATTATCATTTCTTGA
ATGAAGTATTGAAAACAAATGCTATGAAGAAAGTTCACGAGTATTTGAGA
CGAAAGAACAAAGCTCCTTACTCTTCTAGTCAATTTAAGTCAGCTTTATA
TGACTTGTGGTTCCAAATGTACTATCGATCAAGCGTTCGTGGTTCAAGTG
GTTTTGAACACGTGTTTGTTGGAGAAACAAAATCTGATGGACAAGTATCT
GGATTTCATAACTGGATTCAATTTTACTTGGAAGAGAAAAATCGCAATTT
GAATTATTATGGATATCTCAAGAAAAGTAGCTCGAGTCCATATTTGAGTA
TTGTCAAATACACATggcaaaagaaaatcaaacatATTGGCTCTTCCTTT
TATGGTACTTCACCTGAATTCGAATTTGCGTTATACAGCTTGGTGTACAT
GATGGGTTATGAAAGACTTCAATTCTCATTGGACGGCATGCAAGTCAAAA
TCACGTGTTTTGGAATGAACCGAAATCGTAATATCGGAACTTGTTATCCC
GATCTCGTTTAGACAATAGTTTTTATTTCTTCCACCAGCACTGTAGTCAA
AGCAAGCTACGAATTACAATCTCTGATAAATACTTTGTGGAAAGAAGACA
CCAACCGATTAGTCTTTGGTAAAGACATTCGTTTGAATTACCAAAACCAA
GCTTCATGGTCGACAGCCAGAGATGTTTCATACAAACCATTGTTTTATTC
GGTCAACACTAACGTGTTCAGTAAACCAACGTTTAGAGcatTCATTGCCT
TATTGGACAATTATGAATCAGACACGTACAGCAGAGAATCTGTCCCAACA
TCAGAAATCAACGAAAATTATCATTTCTTGAATGAAGTATTGAAAACAAA
TGCTATGAAGAAAGTTCACGAGTATTTGAGACGAAAGAACAAAGCTCCTT
ACTCTTCTAGTCAATTTAAGTCAGCTTTATATGACTTGTGGTTCCAAATG
TACTATCGATCAAGCGTTCGTGGTTCAAGTGGTTTTGAACACGTGTTTGT
TGGAGAAACAAAATCTGATGGACAAGTATCTGGATTTCATAACTGGATTC
AATTTTACTTGGAAGAGAAAAATCGCAATTTGAATTATTATGGATATCTC
AAGAAAAGTAGCTCGAGTCCATATTTGAGTATTGTCAAATACACATggca
aaagaaaatcaaacatATTGGCTCTTCCTTTTATGGTACTTCACCTGAAT
TCGAATTTGCGTTATACAGCTTGGTGTACATGATGGGTTATGAAAGACTT
CAATTCTCATTGGACGGCATGCAAGTCAAAATCACGTGTTTTGGAATGAA
CCGAAATCGTAATATCGGAACTTGTTATCCCGATCTCGTTTAGACAATAG
TTTTTATTTCTTCCACCAGCACTGTAGTCAAAGCAAGCTACGAATTACAA
TCTCTGATAAATACTTTGTGGAAAGAAGACACCAACCGATTAGTCTTTGG
TAAAGACATTCGTTTGAATTACCAAAACCAAGCTTCATGGTCGACAGCCA
GAGATGTTTCATACAAACCATTGTTTTATTCGGTCAACACTAACGTGTTC
AGTAAACCAACGTTTAGAGcatTCATTGCCTTATTGGACAATTATGAATC
AGACACGTACAGCAGAGAATCTGTCCCAACATCAGAAATCAACGAAAATT
ATCATTTCTTGAATGAAGTATTGAAAACAAATGCTATGAAGAAAGTTCAC
GAGTATTTGAGACGAAAGAACAAAGCTCCTTACTCTTCTAGTCAATTTAA
GTCAGCTTTATATGACTTGTGGTTCCAAATGTACTATCGATCAAGCGTTC
GTGGTTCAAGTGGTTTTGAACACGTGTTTGTTGGAGAAACAAAATCTGAT
GGACAAGTATCTGGATTTCATAACTGGATTCAATTTTACTTGGAAGAGAA
AAATCGCAATTTGAATTATTATGGATATCTCAAGAAAAGTAGCTCGAGTC
CATATTTGAGTATTGTCAAATACACATggcaaaagaaaatcaaacatATT
GGCTCTTCCTTTTATGGTACTTCACCTGAATTCGAATTTGCGTTATACAG
CTTGGTGTACATGATGGGTTATGAAAGACTTCAATTCTCATTGGACGGCA
TGCAAGTCAAAATCACGTGTTTTGGAATGAACCGAAATCGTAATATCGGA
ACTTGTTATCCCGATCTCGTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056148-exon-scaffold_268-1491911889:103111..103337 | TCONS_00056148-exon-scaffold_268-1491911889:103111..103337 | Clytia hemisphaerica | exon |
| TCONS_00056148-exon-scaffold_268-1510915933:103111..103337 | TCONS_00056148-exon-scaffold_268-1510915933:103111..103337 | Clytia hemisphaerica | exon |
| TCONS_00056148-exon-scaffold_268-1575043694:103111..103337 | TCONS_00056148-exon-scaffold_268-1575043694:103111..103337 | Clytia hemisphaerica | exon |
| TCONS_00056148-exon-scaffold_268-1491911889:104877..105102 | TCONS_00056148-exon-scaffold_268-1491911889:104877..105102 | Clytia hemisphaerica | exon |
| TCONS_00056148-exon-scaffold_268-1510915933:104877..105102 | TCONS_00056148-exon-scaffold_268-1510915933:104877..105102 | Clytia hemisphaerica | exon |
| TCONS_00056148-exon-scaffold_268-1575043694:104877..105102 | TCONS_00056148-exon-scaffold_268-1575043694:104877..105102 | Clytia hemisphaerica | exon |
| TCONS_00056148-exon-scaffold_268-1491911889:105617..105767 | TCONS_00056148-exon-scaffold_268-1491911889:105617..105767 | Clytia hemisphaerica | exon |
| TCONS_00056148-exon-scaffold_268-1510915933:105617..105767 | TCONS_00056148-exon-scaffold_268-1510915933:105617..105767 | Clytia hemisphaerica | exon |
| TCONS_00056148-exon-scaffold_268-1575043694:105617..105767 | TCONS_00056148-exon-scaffold_268-1575043694:105617..105767 | Clytia hemisphaerica | exon |
| TCONS_00056148-exon-scaffold_268-1491911889:110891..111256 | TCONS_00056148-exon-scaffold_268-1491911889:110891..111256 | Clytia hemisphaerica | exon |
| TCONS_00056148-exon-scaffold_268-1510915933:110891..111256 | TCONS_00056148-exon-scaffold_268-1510915933:110891..111256 | Clytia hemisphaerica | exon |
| TCONS_00056148-exon-scaffold_268-1575043694:110891..111256 | TCONS_00056148-exon-scaffold_268-1575043694:110891..111256 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_268 | supercontig | scaffold_268:103111..111256 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR018998 | Endoribonuclease_XendoU |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016788 | hydrolase activity, acting on ester bonds |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0016788 |
hydrolase activity, acting on ester bonds |
Blast
BLAST of TCONS_00056148 vs. Swiss-Prot (Human)
Match: ENDOU (Poly(U)-specific endoribonuclease OS=Homo sapiens GN=ENDOU PE=1 SV=2) HSP 1 Score: 162.155 bits (409), Expect = 1.272e-45 Identity = 106/249 (42.57%), Postives = 148/249 (59.44%), Query Frame = 2
Query: 50 ELQSLINTLWKEDTNRLVFGKDIRLNYQNQASWSTAR---DVSYKPLFYSVNTNVFSKPTFRAFIALLDNYESDTYSRESVPTSEINENYHFLNEVLKTNAMKKVHEYLRRKNKAPYSSSQ-FKSALYDLWFQMYYRSSVRG-SSGFEHVFVGETKSDGQVSGFHNWIQFYLEEKNR--NXXXXXXXXXXXXXXXXXXXXXTWQKKIKHIGSSFYGTSPEFEFALYSLVYMMGYERL-QFSLDGMQVKI 772
E+QS+ +++ DTN+ +DI LN QN S S R D KPLF VN +FSKPT+ AFI LL+NY+ T E E+ E FL E++KT MK+++ +L +N+ Y S Q F L ++WF +Y R + G SSGFEHVF GE K G+V+GFHNWI+FYLEEK + + Y S P + +++ W K +GS+F G+SPEFEFALYSL ++ ++ Q SL G + +
Sbjct: 140 EIQSISEKIYRADTNK-AQKEDIVLNSQNCISPSETRNQVDRCPKPLFTYVNEKLFSKPTYAAFINLLNNYQRATGHGEHFSAQELAEQDAFLREIMKTAVMKELYSFLHHQNR--YGSEQEFVDDLKNMWFGLYSRGNEEGDSSGFEHVFSGEVKK-GKVTGFHNWIRFYLEEKEGLVDYYSHIYDGPWDSYPDVLAMQFNWDGYYKEVGSAFIGSSPEFEFALYSLCFIARPGKVCQLSLGGYPLAV 384
The following BLAST results are available for this feature:
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