TCONS_00056168 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056168
Unique NameTCONS_00056168
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1284

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056168 ID=TCONS_00056168|Name=TCONS_00056168|organism=Clytia hemisphaerica|type=transcript|length=1284bp
GTGAAAACTAAGGTCTTTTAAAGCTGGGCGTGCAATATAATTATTGAGTT
TCAATAGTTCATTCAAGCTCTCCtggttgatttaaaaaaaagctaatATA
AACTGATTTGACCAAGGTTTGTGCGTTCGAGACAAATCAGAAAGAAGAGA
AAGGAGAGAGGAGATGCTAATCTATCGGAAAAGATAAACCAACAATGGAA
AAGAATAGATGGAGGTAGTAATTTGTTTTCTAATGAGGTGTTGTAACTCG
TTACCGCCTTCCATGAAAGCTATTCAATTCAGATTACGTATTCAATCTTT
TGTATGTGACGTCATGTGGATACTAGAATCAGGGGGTCATTCGATTGTTG
TATAAAAGCATCGAATTATGGAAGATTGGAATCAATTGACTAGCGATTTT
CAAAACGAGTTCATCTCGTCAACACAGCGACTTTACTAGCAGCAGCAATC
ATAATTCTTGTCTTTTCAGCACATTTTCTTCTTCGACATTTACTacaaat
caaactttgaagagtgttcaaaagaaaaagaattgtgACTATCATTATAA
CGAAAGATCTGATAAAAAAACTGCAAGCAAAATGTGTGACACAATGGCGT
ATACTAGTGGACCTGTGCTTTATCACCAACGAGAAGTGGCCACTGAGGAA
TTGCTGCGACCAAAGATTGTGACTCCATTACCTCTTCAGTCTTCTGTTAA
AGTTGGCTCTGAATTCAAATTGCtatgtcttttgactggttaCCCAACCA
TCGAAATCAATTGGTATTTGAACGGAGATCTTCTGGTGGAGACTGAAGAC
GGACGAATTCGTTTTGATAACCATCAAAGATTGCTGGTGATTCGAGACTT
GAAACCATCAGATGCTGGTTCAATTACCTTTCATGCAACCAACAAATACG
GAGAAGTAACGTGTAGTTCTCATTTGCAAGTCTTAATGACCAAACGTGAG
AAATTTGCGCATTCAAGGTATGGGAATTATTCGTTAAATTCGAGTAACTC
ACCAAAGCCAATCCGACGTTTGTTACATGCGCTGAATAGGATGAAATCGT
TTTAGAGGGAAGACAGCAGATGAAGGTGATATCAGATTTTCAGAAGGAAA
GCTGACCTTTGCAATCGAGAATCCACCATAGAAACATATAACGCTTTTCA
CCGAATATTTACAACGGCAACAAAGACTTTcttaagggggtagtcatatg
agattttgaaaattggtgaaaaatttatcaatttcgggatttaaggcttt
ttagtatcctttatccTTCCTGAACATACCCTGA
Run BLAST on NCBI

transcript from alignment at scaffold_268:163383..166754-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056168 ID=TCONS_00056168|Name=TCONS_00056168|organism=Clytia hemisphaerica|type=transcript|length=3372bp|location=Sequence derived from alignment at scaffold_268:163383..166754- (Clytia hemisphaerica)
GTGAAAACTAAGGTCTTTTAAAGCTGGGCGTGCAATATAATTATTGAGTT
TCAATAGTTCATTCAAGCTCTCCTGGTTGATTTAAAAAAAAGCTAATATA
AACTGATTTGACCAAGGTTTGTGCGTTCGAGACAAATCAGAAAGAAGAGA
AAGGAGAGAGGAGATGCTAATCTATCGGAAAAGATAAACCAACAATGGAA
AAGAATAGATGGAGGTAGTAATTTGTTTTCTAATGAGGTGTTGTAACTCG
TTACCGCCTTCCATGAAAGCTATTCAATTCAGATTACGTATTCAATCTTT
TGTATGTGACGTCATGTGGATACTAGAATCAGGGGGTCATTCGATTGTTG
TATAAAAGCATCGAATTATGGAAGATTGGAATCAATTGACTAGCGATTTT
CAAAACGAGTTCATCTCGTCAACACAGCGACTTTACTAGCAGCAGCAATC
ATAATTCTTGTCTTTTCAGCACATTTTCTTCTTCGACATTTACTACAAAT
CAAACTTTGAAGAGTGTTCAAAAGAAAAAGAATTGTGACTATCATTATAA
CGAAAGATCTGATAAAAAAACTGCAAGCAAAATGTGTGGTAAGTGTCATG
TTATCTTTTGTGATCTTTAAATCGCTCCTCAGTCATCAGTTTCGTTACTC
TGAAGGGATACTAATCATAATCATATAATTACTGCAACTACTTGGCTCAA
GAGCTTTTTGTCTAACAGGATTATTATTTGGGCTGGTTATAGCGTTCTAA
GTATACTATGTCACGGGACGAATGAAAGATTCAACTCTCAGAACTTAAAA
TTGCGTGGATGAAATCATTCGTTATATTCTACAGTATATCCGCACCTGGA
CTTCAACTTCTATTCATGTCCAACTTATTGATGAATGTTGTTTTATCAAT
GGTTGAAAGTGTGAATAGTATTCGTATGAACGTGTGGTATTAAGTTAATC
AAGTGATTATTCCACTTCTACAGCTTAAGAAATCACCTTATAAAACTTTA
GATGATGTTAAAATAGTGCTGTAATAAGAAACCTATTAACAAATCGCATG
AGCAAGCTCGTTTTTTGTATGTTTCAGTTCGTGCCTGTATGAAGAAAATA
ACGGTTCGCAGAGAGCTTTTTAGCGTTTATTTTTAGTTTTGCAAGCGAGG
GTGAGGTCTGCCAACCCATTGTACACAGAAGTCTTACATCTTTACCATTT
CTTTTGTAGACACAATGGCGTATACTAGTGGACCTGTGCTTTATCACCAA
CGAGAAGTGGCCACTGAGGAATTACTGCGACCAAAGATTGTGACTCCATT
ACCTCTTCAGTCTTCTGTTAAAGTTGGCTCCGAATTCAAATTACTATGTC
TTTTGACCGGTTACCCAACCATCGAGATCAATTGGTATTTGAACGGAGAT
CTTCTGGTGGAGACTGAAGACGGACGAATTCGTTTTGATAACCATCAAAG
ATTGCTGGTGATTCGAGACTTGAAACCATCAGATGCTGGTTCAATTACCT
TTCATGCAACCAACAAATACGGAGAAGTAACGTGTAGTTCTCATTTGCAA
GTCTTAATGACCAAACGTGAGAAATTTGCGCATTCAAGGTATGGGAATTA
TTCGTTAAATTCGAGTAACTCACCAAAGCCAATCCGACGTTTGTTACATG
CGCTGAATAGGATGAAATCGTTTTAGAGGGAAGACAGCAGATGAAGGTGA
TATCAGATTTTCAGAAGGAAAGTTGACCTTTGCAATCGAGAATCCACCAT
AGAATCATATAACGCTTTTCACCGAATATTTACAACGGCAACAAAGACTT
TCTTAAGAGAGTGACAATTCACTAAATAACGACATCGCATCTCAAAAACT
TTGACTTGAGACAATAAGGAATATCCATAGGATGTATAATGAGTGATTCT
ATATCGTCATGCTACTCCACACGATTATGATTCTTACCCACCATGCATAA
ACTAACCTAACAAATCCCGGGATTGAAAAGATTTAAAACGAACTGAAAAG
TGAATAAAATGGATAATAAAGAAACCGCAAACCTCCAACCGTGCTATCTG
ACGTGAAAGGCGAACGAAGCTTTATGTTACCCAAAGTTTGGCAATGTAAA
ATTGGGTGTAAAGCTTCGTGCCACTAGCTGAGACAACTTCAATGGAGGGT
GCAAGGTTGACGTAAAGCCTTGACCACACGCCGAGTGCATTCTAAAAGCG
GGTGCCTCGATTCTGACGTATATGCAACGAACTATAGAAAAGACACCTGC
TGAAAAATTGAAAGAATAGACTAATCACTGGGTGTGTTTGGGTTTGTTTT
TAGCACCCAGCACATCTTATTATTGTTTAAGTAAGACAATAAAAGAGCTT
CTAAAATAATTAATAACGAAGGCTCAATAAAGACAATGGGGCCCTGTTGA
GGGCCATAAATACCTTACATACAAAAAAGAAGGGTCCTTTCGGGGACAAA
AAAAAGCTATTAATAAACAAAAAAACTTATTTTTTCCGNAATAAGAAACC
TATTAACAAATTGCATGAGCAAGCTCGTTTTTTGTATGTTTCAGTTCGTG
CCTGTATGATTAAAATAACGTTTCGCAGAGAGCTTTTTAGCGTTTATTTT
TAGTTTTGCAAGCGAGGGTGAGGTCTGCCAACCCATTGTGCACAGAAGTC
TTACATCTTTACCATTTCTTTTGTAGACACAATGGCGTATACTAGTGGAC
CTGTGCTTTATCACCAACGAGAAGTGGCCACTGAGGAATTGCTGCGACCA
AAGATTGTGACTCCATTACCTCTTCAGTCTTCTGTTAAAGTTGGCTCTGA
ATTCAAATTGCTATGTCTTTTGACTGGTTACCCAACCATCGAAATCAATT
GGTATTTGAACGGAGATCTTCTGGTGGAGACTGAAGACGGACGAATTCGT
TTTGATAACCATCAAAGATTGCTGGTGATTCGAGACTTGAAACCATCAGA
TGCTGGTTCAATTACCTTTCATGCAACCAACAAATACGGAGAAGTAACGT
GTAGTTCTCATTTGCAAGTCTTAATGACCAAACGTGAGAAATTTGCGCAT
TCAAGGTATGGGAATTATTCGTTAAATTCGAGTAACTCACCAAAGCCAAT
CCGACGTTTGTTACATGCGCTGAATAGGATGAAATCGTTTTAGAGGGAAG
ACAGCAGATGAAGGTGATATCAGATTTTCAGAAGGAAAGCTGACCTTTGC
AATCGAGAATCCACCATAGAAACATATAACGCTTTTCACCGAATATTTAC
AACGGCAACAAAGACTTTCTTAAGGGGGTAGTCATATGAGATTTTGAAAA
TTGGTGAAAAATTTATCAATTTCGGGATTTAAGGCTTTTTAGTATCCTTT
ATCCTTCCTGAACATACCCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035362XLOC_035362Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056168-exon-scaffold_268-1575043694:166167..166754TCONS_00056168-exon-scaffold_268-1575043694:166167..166754Clytia hemisphaericaexon
TCONS_00056168-exon-scaffold_268-1575043694:165522..165545TCONS_00056168-exon-scaffold_268-1575043694:165522..165545Clytia hemisphaericaexon
TCONS_00056168-exon-scaffold_268-1575043694:163383..164054TCONS_00056168-exon-scaffold_268-1575043694:163383..164054Clytia hemisphaericaexon
TCONS_00056168-exon-scaffold_268-1510915933:166167..166754TCONS_00056168-exon-scaffold_268-1510915933:166167..166754Clytia hemisphaericaexon
TCONS_00056168-exon-scaffold_268-1510915933:165522..165545TCONS_00056168-exon-scaffold_268-1510915933:165522..165545Clytia hemisphaericaexon
TCONS_00056168-exon-scaffold_268-1510915933:163383..164054TCONS_00056168-exon-scaffold_268-1510915933:163383..164054Clytia hemisphaericaexon
TCONS_00056168-exon-scaffold_268-1491911889:166167..166754TCONS_00056168-exon-scaffold_268-1491911889:166167..166754Clytia hemisphaericaexon
TCONS_00056168-exon-scaffold_268-1491911889:165522..165545TCONS_00056168-exon-scaffold_268-1491911889:165522..165545Clytia hemisphaericaexon
TCONS_00056168-exon-scaffold_268-1491911889:163383..164054TCONS_00056168-exon-scaffold_268-1491911889:163383..164054Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_268supercontigscaffold_268:163383..166754 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0906993	0.0733686	0.16086	0.230967	0.332079	0	0.065506	0.120142	0.706211	0.0897005	1.11218	0.681811	2.65377	1.33038	0.14621	0.133596	0.336269	0.135816	0.0722578	0.0254853	0	0.0666573	0	0	0.0498283	0.150014
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056168 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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