Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056170 ID=TCONS_00056170|Name=TCONS_00056170|organism=Clytia hemisphaerica|type=transcript|length=1614bp GTGAAAACTAAGGTCTTTTAAAGCTGGGCGTGCAATATAATTATTGAGTT TCAATAGTTCATTCAAGCTCTCCtggttgatttaaaaaaaagctaatATA AACTGATTTGACCAAGGTTTGTGCGTTCGAGACAAATCAGAAAGAAGAGA AAGGAGAGAGGAGATGCTAATCTATCGGAAAAGATAAACCAACAATGGAA AAGAATAGATGGAGCACATTTTCTTCTTCGACATTTACTacaaatcaaac tttgaagagtgttcaaaagaaaaagaattgtgACTATCATTATAACGAAA GATCTGATAAAAAAACTGCAAGCAAAATGTGTGACACAATGGCGTATACT AGTGGACCTGTGCTTTATCACCAACGAGAAGTGGCCACTGAGGAATTACT GCGACCAAAGATTGTGACTCCATTACCTCTTCAGTCTTCTGTTAAAGTTG GCTCCGAATTCAAATTACTATGTCTTTTGACCGGTTACCCAACCATCGAG ATCAATTGGTATTTGAACGGAGATCTTCTGGTGGAGACTGAAGACGGACG AATTCGTTTTGATAACCATCAAAGATTGCTGGTGATTCGAGACTTGAAAC CATCAGATGCTGGTTCAATTACCTTTCATGCAACCAACAAATACGGAGAA GTAACGTGTAGTTCTCATTTGCAAGTCTTAATGACCAAACGTGAGAAATT TGCGCATTCAAGGTATGGGAATTATTCGTTAAATTCGAGTAACTCACCAA AGCCAATCCGACGTTTGTTACATGCGCTGAATAGGATGAAATCGTTTTAG AGGGAAGACAGCAGATGAAGGTGATATCAGATTTTCAGAAGGAAAGTTGA CCTTTGCAATCGAGAATCCACCATAGAATCATATAACGCTTTTCACCGAA TATTTACAACGGCAACAAAGACTTTCTTAAGAGAGTGACAATTCACTAAA TAACGACATCGCATCTCAAAAACTTTGACTTGAGACAATAAGGAATATCC ATAGGATGTATAATGAGTGATTCTATATCGTCATGCTACTCCACACGATT ATGATTCTTACCCACCATGCATAAACTAACCTAACAAATCCCGGGATTGA AAAGATTTAAAACGAACTGAAAAGTGAATAAAATGGATAATAAAGAAACC GCAAACCTCCAACCGTGCTATCTGACGTGAAAGGCGAACGAAGCTTTATG TTACCCAAAGTTTGGCAATGTAAAATTGGGTGTAAAGCTTCGTGCCACTA GCTGAGACAACTTCAATGGAGGGTGCAAGGTTGACGTAAAGCCTTGACCA CACGCCGAGTGCATTCTAAAAGCGGGTGCCTCGATTCTGACGTATATGCA ACGAACTATAGAAAAGACACctgctgaaaaattgaaagaatagACTAATC ACTGGGTGtgtttgggtttgtttttaGCACCCAGCACATCTTATTATTGT TTAAGTAAGACAATAAAAGAGCTTCTAAAATAATTAATAACGAAGGCTCA ATAAAGACAATGGGGCCCTGTTGAGGGCCATAAATACCTTACATACAAAA AAGAAGGGTCCTTTCGGGGACAAAAAAAAGCtattaataaacaaaaaaac ttattttttccgNA Run BLAST on NCBI protein sequence of TCONS_00056170-protein >TCONS_00056170-protein ID=TCONS_00056170-protein|Name=TCONS_00056170-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MEKNRWSTFSSSTFTTNQTLKSVQKKKNCDYHYNERSDKKTASKMCDTMA YTSGPVLYHQREVATEELLRPKIVTPLPLQSSVKVGSEFKLLCLLTGYPT IEINWYLNGDLLVETEDGRIRFDNHQRLLVIRDLKPSDAGSITFHATNKY GEVTCSSHLQVLMTKREKFAHSRYGNYSLNSSNSPKPIRRLLHALNRMKS F Run BLAST on NCBI transcript from alignment at scaffold_268:164265..166754- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056170 ID=TCONS_00056170|Name=TCONS_00056170|organism=Clytia hemisphaerica|type=transcript|length=2490bp|location=Sequence derived from alignment at scaffold_268:164265..166754- (Clytia hemisphaerica) GTGAAAACTAAGGTCTTTTAAAGCTGGGCGTGCAATATAATTATTGAGTT
TCAATAGTTCATTCAAGCTCTCCTGGTTGATTTAAAAAAAAGCTAATATA
AACTGATTTGACCAAGGTTTGTGCGTTCGAGACAAATCAGAAAGAAGAGA
AAGGAGAGAGGAGATGCTAATCTATCGGAAAAGATAAACCAACAATGGAA
AAGAATAGATGGAGGTAGTAATTTGTTTTCTAATGAGGTGTTGTAACTCG
TTACCGCCTTCCATGAAAGCTATTCAATTCAGATTACGTATTCAATCTTT
TGTATGTGACGTCATGTGGATACTAGAATCAGGGGGTCATTCGATTGTTG
TATAAAAGCATCGAATTATGGAAGATTGGAATCAATTGACTAGCGATTTT
CAAAACGAGTTCATCTCGTCAACACAGCGACTTTACTAGCAGCAGCAATC
ATAATTCTTGTCTTTTCAGCACATTTTCTTCTTCGACATTTACTACAAAT
CAAACTTTGAAGAGTGTTCAAAAGAAAAAGAATTGTGACTATCATTATAA
CGAAAGATCTGATAAAAAAACTGCAAGCAAAATGTGTGGTAAGTGTCATG
TTATCTTTTGTGATCTTTAAATCGCTCCTCAGTCATCAGTTTCGTTACTC
TGAAGGGATACTAATCATAATCATATAATTACTGCAACTACTTGGCTCAA
GAGCTTTTTGTCTAACAGGATTATTATTTGGGCTGGTTATAGCGTTCTAA
GTATACTATGTCACGGGACGAATGAAAGATTCAACTCTCAGAACTTAAAA
TTGCGTGGATGAAATCATTCGTTATATTCTACAGTATATCCGCACCTGGA
CTTCAACTTCTATTCATGTCCAACTTATTGATGAATGTTGTTTTATCAAT
GGTTGAAAGTGTGAATAGTATTCGTATGAACGTGTGGTATTAAGTTAATC
AAGTGATTATTCCACTTCTACAGCTTAAGAAATCACCTTATAAAACTTTA
GATGATGTTAAAATAGTGCTGTAATAAGAAACCTATTAACAAATCGCATG
AGCAAGCTCGTTTTTTGTATGTTTCAGTTCGTGCCTGTATGAAGAAAATA
ACGGTTCGCAGAGAGCTTTTTAGCGTTTATTTTTAGTTTTGCAAGCGAGG
GTGAGGTCTGCCAACCCATTGTACACAGAAGTCTTACATCTTTACCATTT
CTTTTGTAGACACAATGGCGTATACTAGTGGACCTGTGCTTTATCACCAA
CGAGAAGTGGCCACTGAGGAATTACTGCGACCAAAGATTGTGACTCCATT
ACCTCTTCAGTCTTCTGTTAAAGTTGGCTCCGAATTCAAATTACTATGTC
TTTTGACCGGTTACCCAACCATCGAGATCAATTGGTATTTGAACGGAGAT
CTTCTGGTGGAGACTGAAGACGGACGAATTCGTTTTGATAACCATCAAAG
ATTGCTGGTGATTCGAGACTTGAAACCATCAGATGCTGGTTCAATTACCT
TTCATGCAACCAACAAATACGGAGAAGTAACGTGTAGTTCTCATTTGCAA
GTCTTAATGACCAAACGTGAGAAATTTGCGCATTCAAGGTATGGGAATTA
TTCGTTAAATTCGAGTAACTCACCAAAGCCAATCCGACGTTTGTTACATG
CGCTGAATAGGATGAAATCGTTTTAGAGGGAAGACAGCAGATGAAGGTGA
TATCAGATTTTCAGAAGGAAAGTTGACCTTTGCAATCGAGAATCCACCAT
AGAATCATATAACGCTTTTCACCGAATATTTACAACGGCAACAAAGACTT
TCTTAAGAGAGTGACAATTCACTAAATAACGACATCGCATCTCAAAAACT
TTGACTTGAGACAATAAGGAATATCCATAGGATGTATAATGAGTGATTCT
ATATCGTCATGCTACTCCACACGATTATGATTCTTACCCACCATGCATAA
ACTAACCTAACAAATCCCGGGATTGAAAAGATTTAAAACGAACTGAAAAG
TGAATAAAATGGATAATAAAGAAACCGCAAACCTCCAACCGTGCTATCTG
ACGTGAAAGGCGAACGAAGCTTTATGTTACCCAAAGTTTGGCAATGTAAA
ATTGGGTGTAAAGCTTCGTGCCACTAGCTGAGACAACTTCAATGGAGGGT
GCAAGGTTGACGTAAAGCCTTGACCACACGCCGAGTGCATTCTAAAAGCG
GGTGCCTCGATTCTGACGTATATGCAACGAACTATAGAAAAGACACCTGC
TGAAAAATTGAAAGAATAGACTAATCACTGGGTGTGTTTGGGTTTGTTTT
TAGCACCCAGCACATCTTATTATTGTTTAAGTAAGACAATAAAAGAGCTT
CTAAAATAATTAATAACGAAGGCTCAATAAAGACAATGGGGCCCTGTTGA
GGGCCATAAATACCTTACATACAAAAAAGAAGGGTCCTTTCGGGGACAAA
AAAAAGCTATTAATAAACAAAAAAACTTATTTTTTCCGNA Coding sequence (CDS) from alignment at scaffold_268:164265..166754- >TCONS_00056170 ID=TCONS_00056170|Name=TCONS_00056170|organism=Clytia hemisphaerica|type=CDS|length=1818bp|location=Sequence derived from alignment at scaffold_268:164265..166754- (Clytia hemisphaerica) ACACAATGGCGTATACTAGTGGACCTGTGCTTTATCACCAACGAGAAGTG GCCACTGAGGAATTACTGCGACCAAAGATTGTGACTCCATTACCTCTTCA GTCTTCTGTTAAAGTTGGCTCCGAATTCAAATTACTATGTCTTTTGACCG GTTACCCAACCATCGAGATCAATTGGTATTTGAACGGAGATCTTCTGGTG GAGACTGAAGACGGACGAATTCGTTTTGATAACCATCAAAGATTGCTGGT GATTCGAGACTTGAAACCATCAGATGCTGGTTCAATTACCTTTCATGCAA CCAACAAATACGGAGAAGTAACGTGTAGTTCTCATTTGCAAGTCTTAATG ACCAAACGTGAGAAATTTGCGCATTCAAGGTATGGGAATTATTCGTTAAA TTCGAGTAACTCACCAAAGCCAATCCGACGTTTGTTACATGCGCTGAATA GGATGAAATCGTTTTAGCACATTTTCTTCTTCGACATTTACTACAAATCA AACTTTGAAGAGTGTTCAAAAGAAAAAGAATTGTGACTATCATTATAACG AAAGATCTGATAAAAAAACTGCAAGCAAAATGTGTGATGGAAAAGAATAG ATGGAGACACAATGGCGTATACTAGTGGACCTGTGCTTTATCACCAACGA GAAGTGGCCACTGAGGAATTACTGCGACCAAAGATTGTGACTCCATTACC TCTTCAGTCTTCTGTTAAAGTTGGCTCCGAATTCAAATTACTATGTCTTT TGACCGGTTACCCAACCATCGAGATCAATTGGTATTTGAACGGAGATCTT CTGGTGGAGACTGAAGACGGACGAATTCGTTTTGATAACCATCAAAGATT GCTGGTGATTCGAGACTTGAAACCATCAGATGCTGGTTCAATTACCTTTC ATGCAACCAACAAATACGGAGAAGTAACGTGTAGTTCTCATTTGCAAGTC TTAATGACCAAACGTGAGAAATTTGCGCATTCAAGGTATGGGAATTATTC GTTAAATTCGAGTAACTCACCAAAGCCAATCCGACGTTTGTTACATGCGC TGAATAGGATGAAATCGTTTTAGCACATTTTCTTCTTCGACATTTACTAC AAATCAAACTTTGAAGAGTGTTCAAAAGAAAAAGAATTGTGACTATCATT ATAACGAAAGATCTGATAAAAAAACTGCAAGCAAAATGTGTGATGGAAAA GAATAGATGGAGACACAATGGCGTATACTAGTGGACCTGTGCTTTATCAC CAACGAGAAGTGGCCACTGAGGAATTACTGCGACCAAAGATTGTGACTCC ATTACCTCTTCAGTCTTCTGTTAAAGTTGGCTCCGAATTCAAATTACTAT GTCTTTTGACCGGTTACCCAACCATCGAGATCAATTGGTATTTGAACGGA GATCTTCTGGTGGAGACTGAAGACGGACGAATTCGTTTTGATAACCATCA AAGATTGCTGGTGATTCGAGACTTGAAACCATCAGATGCTGGTTCAATTA CCTTTCATGCAACCAACAAATACGGAGAAGTAACGTGTAGTTCTCATTTG CAAGTCTTAATGACCAAACGTGAGAAATTTGCGCATTCAAGGTATGGGAA TTATTCGTTAAATTCGAGTAACTCACCAAAGCCAATCCGACGTTTGTTAC ATGCGCTGAATAGGATGAAATCGTTTTAGCACATTTTCTTCTTCGACATT TACTACAAATCAAACTTTGAAGAGTGTTCAAAAGAAAAAGAATTGTGACT ATCATTATAACGAAAGATCTGATAAAAAAACTGCAAGCAAAATGTGTGAT GGAAAAGAATAGATGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00056170-exon-scaffold_268-1575043694:166541..166754 | TCONS_00056170-exon-scaffold_268-1575043694:166541..166754 | Clytia hemisphaerica | exon |
TCONS_00056170-exon-scaffold_268-1575043694:166167..166285 | TCONS_00056170-exon-scaffold_268-1575043694:166167..166285 | Clytia hemisphaerica | exon |
TCONS_00056170-exon-scaffold_268-1575043694:164265..165545 | TCONS_00056170-exon-scaffold_268-1575043694:164265..165545 | Clytia hemisphaerica | exon |
TCONS_00056170-exon-scaffold_268-1510915933:166541..166754 | TCONS_00056170-exon-scaffold_268-1510915933:166541..166754 | Clytia hemisphaerica | exon |
TCONS_00056170-exon-scaffold_268-1510915933:166167..166285 | TCONS_00056170-exon-scaffold_268-1510915933:166167..166285 | Clytia hemisphaerica | exon |
TCONS_00056170-exon-scaffold_268-1510915933:164265..165545 | TCONS_00056170-exon-scaffold_268-1510915933:164265..165545 | Clytia hemisphaerica | exon |
TCONS_00056170-exon-scaffold_268-1491911889:166541..166754 | TCONS_00056170-exon-scaffold_268-1491911889:166541..166754 | Clytia hemisphaerica | exon |
TCONS_00056170-exon-scaffold_268-1491911889:166167..166285 | TCONS_00056170-exon-scaffold_268-1491911889:166167..166285 | Clytia hemisphaerica | exon |
TCONS_00056170-exon-scaffold_268-1491911889:164265..165545 | TCONS_00056170-exon-scaffold_268-1491911889:164265..165545 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_268 | supercontig | scaffold_268:164265..166754 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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