TCONS_00056206 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056206
Unique NameTCONS_00056206
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length342

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056206 ID=TCONS_00056206|Name=TCONS_00056206|organism=Clytia hemisphaerica|type=transcript|length=342bp
ATCAGGGGGTACACTCACAGATCCGCCTTCCATACCGATGTCACCAAAAT
GTATAATTCCGTCAAGCTACACTCTGATCACTGGTGCTACCAACGATACT
TATGGCATGACACACTCGACATCAACCAGCCACCTGAAGAGAAAGTGATA
AAGACGTTGATATACGGTGTGCAATCAAGTGGCAATCAATCCGAACGAGG
CATTCGTCAAACCTCATCCTTGTCAAAAGAGGAATTCCCAGAAGTTGACC
GAATCGTAAACGAAGACTTGTACGTCGACGATTGCATGTCTGGTGAAGTT
GATGATCAAACCTCAAAACAACGAGCCGACCAAATGGAAATC
Run BLAST on NCBI

transcript from alignment at scaffold_269:6710..7051-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056206 ID=TCONS_00056206|Name=TCONS_00056206|organism=Clytia hemisphaerica|type=transcript|length=342bp|location=Sequence derived from alignment at scaffold_269:6710..7051- (Clytia hemisphaerica)
ATCAGGGGGTACACTCACAGATCCGCCTTCCATACCGATGTCACCAAAAT
GTATAATTCCGTCAAGCTACACTCTGATCACTGGTGCTACCAACGATACT
TATGGCATGACACACTCGACATCAACCAGCCACCTGAAGAGAAAGTGATA
AAGACGTTGATATACGGTGTGCAATCAAGTGGCAATCAATCCGAACGAGG
CATTCGTCAAACCTCATCCTTGTCAAAAGAGGAATTCCCAGAAGTTGACC
GAATCGTAAACGAAGACTTGTACGTCGACGATTGCATGTCTGGTGAAGTT
GATGATCAAACCTCAAAACAACGAGCCGACCAAATGGAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035390XLOC_035390Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056206-exon-scaffold_269-1575043694:6710..7051TCONS_00056206-exon-scaffold_269-1575043694:6710..7051Clytia hemisphaericaexon
TCONS_00056206-exon-scaffold_269-1510915933:6710..7051TCONS_00056206-exon-scaffold_269-1510915933:6710..7051Clytia hemisphaericaexon
TCONS_00056206-exon-scaffold_269-1491911889:6710..7051TCONS_00056206-exon-scaffold_269-1491911889:6710..7051Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_269supercontigscaffold_269:6710..7051 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.800246	0.861058	0	0	1.07918	1.70556	1.33542	0.963189	0.969057	2.22745	0	1.28938	0.397686	1.4739	0.151469	0.325098	0.200247	0	0	0.890174	0	0	0	0	1.14558	1.85279	0.365765	0	0.474747	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056206 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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