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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056223 ID=TCONS_00056223|Name=TCONS_00056223|organism=Clytia hemisphaerica|type=transcript|length=934bp
ggcttccgaaattttaggtgttcttataaaaaaaacgtgtatttcaacat
agaatgaaaatattatttctCAACAATTGTTAAATCAAACTTTTATTTCA
ATACTACTTGTATCAATGTTGTGTTTCTCCAACAACGGTCGAATTTCACT
TTCCACAACATAAGAAGATGTATGAAATGATAACTTCCACCAATCATCCT
TCACCCGTATAGTGATTGGTTTGTTGAATGACGTCAAATGGCGTAAAAAG
TTTATTACGTTTGTCTCTTCAACACCTTTGTTCCAAATTGTAACATCAAA
CGAAGTTGACTTTTGTAACAAATCTTCTGGTATTTTGTTCAATAAAGAAA
GAGGACACTTAAAAGTAAGTTTTCCTTGTTCGCATTCGAAGTATGGTGCA
GAACGATCATCATGGATGCTGATCTCTGTCTCGTATTTCTCACCTGATAC
CAAAGAAATGAGATGCTTTTCATCCTCATTATATGATGGACTCTCTACTT
TAAGAGAACCAAtgttttttatgttcaaatCGTTCATCATATCGATGATA
GTTCTGACAAGCATACTATTTATCAGAATTCTTGACAATGTGATTGGTGT
GTTGTACGATAACAAGCGTTGAATGAATAATTTCACTCCATCAATATTAT
CGACATCGGTAAACATCTCAATTGTAACATGGAACGAAGTTGACTTTTGT
AACAAATCTTCTGGTATTTTGTTCACTGAAGAAGGAGGAcacttaaaaaa
aagttttccttgTTCGTATTTGAAGTATGGTCTATCATATTTACTATTAT
CGATCGTGATCTCTGTCTCGTATTTCTCATCTGATAGCAAAGAAATGAGA
TACTTTCCATCCTCATCATATGATGGATTATATACTGTAAGAGAGCCAAT
GTTTTTTATGTTCAACTCGTTTATCATATCGATG Run BLAST on NCBI protein sequence of TCONS_00056223-protein >TCONS_00056223-protein ID=TCONS_00056223-protein|Name=TCONS_00056223-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
IDMINELNIKNIGSLTVYNPSYDEDGKYLISLLSDEKYETEITIDNSKYD
RPYFKYEQGKLFFKCPPSSVNKIPEDLLQKSTSFHVTIEMFTDVDNIDGV
KLFIQRLLSYNTPITLSRILINSMLVRTIIDMMNDLNIKNIGSLKVESPS
YNEDEKHLISLVSGEKYETEISIHDDRSAPYFECEQGKLTFKCPLSLLNK
IPEDLLQKSTSFDVTIWNKGVEETNVINFLRHLTSFNKPITIRVKDDWWK
LSFHTSSYVVESEIRPLLEKHNIDTSSIEIKV Run BLAST on NCBI transcript from alignment at scaffold_269:42365..43298 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056223 ID=TCONS_00056223|Name=TCONS_00056223|organism=Clytia hemisphaerica|type=transcript|length=934bp|location=Sequence derived from alignment at scaffold_269:42365..43298 (Clytia hemisphaerica)
CATCGATATGATAAACGAGTTGAACATAAAAAACATTGGCTCTCTTACAG
TATATAATCCATCATATGATGAGGATGGAAAGTATCTCATTTCTTTGCTA
TCAGATGAGAAATACGAGACAGAGATCACGATCGATAATAGTAAATATGA
TAGACCATACTTCAAATACGAAcaaggaaaacttttttttaagtgTCCTC
CTTCTTCAGTGAACAAAATACCAGAAGATTTGTTACAAAAGTCAACTTCG
TTCCATGTTACAATTGAGATGTTTACCGATGTCGATAATATTGATGGAGT
GAAATTATTCATTCAACGCTTGTTATCGTACAACACACCAATCACATTGT
CAAGAATTCTGATAAATAGTATGCTTGTCAGAACTATCATCGATATGATG
AACGatttgaacataaaaaacaTTGGTTCTCTTAAAGTAGAGAGTCCATC
ATATAATGAGGATGAAAAGCATCTCATTTCTTTGGTATCAGGTGAGAAAT
ACGAGACAGAGATCAGCATCCATGATGATCGTTCTGCACCATACTTCGAA
TGCGAACAAGGAAAACTTACTTTTAAGTGTCCTCTTTCTTTATTGAACAA
AATACCAGAAGATTTGTTACAAAAGTCAACTTCGTTTGATGTTACAATTT
GGAACAAAGGTGTTGAAGAGACAAACGTAATAAACTTTTTACGCCATTTG
ACGTCATTCAACAAACCAATCACTATACGGGTGAAGGATGATTGGTGGAA
GTTATCATTTCATACATCTTCTTATGTTGTGGAAAGTGAAATTCGACCGT
TGTTGGAGAAACACAACATTGATACAAGTAGTATTGAAATAAAAGTTTGA
TTTAACAATTGTTGagaaataatattttcattctatgttgaaatacacgt
tttttttataagaacacctaaaatttcggaagcc Coding sequence (CDS) from alignment at scaffold_269:42365..43298 >TCONS_00056223 ID=TCONS_00056223|Name=TCONS_00056223|organism=Clytia hemisphaerica|type=CDS|length=849bp|location=Sequence derived from alignment at scaffold_269:42365..43298 (Clytia hemisphaerica)
ATCGATATGATAAACGAGTTGAACATAAAAAACATTGGCTCTCTTACAGT
ATATAATCCATCATATGATGAGGATGGAAAGTATCTCATTTCTTTGCTAT
CAGATGAGAAATACGAGACAGAGATCACGATCGATAATAGTAAATATGAT
AGACCATACTTCAAATACGAAcaaggaaaacttttttttaagtgTCCTCC
TTCTTCAGTGAACAAAATACCAGAAGATTTGTTACAAAAGTCAACTTCGT
TCCATGTTACAATTGAGATGTTTACCGATGTCGATAATATTGATGGAGTG
AAATTATTCATTCAACGCTTGTTATCGTACAACACACCAATCACATTGTC
AAGAATTCTGATAAATAGTATGCTTGTCAGAACTATCATCGATATGATGA
ACGatttgaacataaaaaacaTTGGTTCTCTTAAAGTAGAGAGTCCATCA
TATAATGAGGATGAAAAGCATCTCATTTCTTTGGTATCAGGTGAGAAATA
CGAGACAGAGATCAGCATCCATGATGATCGTTCTGCACCATACTTCGAAT
GCGAACAAGGAAAACTTACTTTTAAGTGTCCTCTTTCTTTATTGAACAAA
ATACCAGAAGATTTGTTACAAAAGTCAACTTCGTTTGATGTTACAATTTG
GAACAAAGGTGTTGAAGAGACAAACGTAATAAACTTTTTACGCCATTTGA
CGTCATTCAACAAACCAATCACTATACGGGTGAAGGATGATTGGTGGAAG
TTATCATTTCATACATCTTCTTATGTTGTGGAAAGTGAAATTCGACCGTT
GTTGGAGAAACACAACATTGATACAAGTAGTATTGAAATAAAAGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056223-exon-scaffold_269-1491911889:42365..43298 | TCONS_00056223-exon-scaffold_269-1491911889:42365..43298 | Clytia hemisphaerica | exon |
| TCONS_00056223-exon-scaffold_269-1510915933:42365..43298 | TCONS_00056223-exon-scaffold_269-1510915933:42365..43298 | Clytia hemisphaerica | exon |
| TCONS_00056223-exon-scaffold_269-1575043694:42365..43298 | TCONS_00056223-exon-scaffold_269-1575043694:42365..43298 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_269 | supercontig | scaffold_269:42365..43298 . |
Blast
The following BLAST results are available for this feature:
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