TCONS_00056236 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056236
Unique NameTCONS_00056236
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length934

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056236 ID=TCONS_00056236|Name=TCONS_00056236|organism=Clytia hemisphaerica|type=transcript|length=934bp
CCTTGGTGTAAGCTGTTTCTGTTCCGCTCCAGCAGATTTCGTTAAATTTG
AAACGCTACTTACCGGGTGCCGTATCTTTTTTGGAGGATATACGAGGGCC
TAATACAACAGGCCCAAACATGACCTGGTTTACTTTCTCCTAAGCTAAAA
TAATTGCATTTTCATTGATTACACAACCTTCAAAAGAGCATGTTGAACAT
TAAAAAGGATTAAAAAGGACATAATCGTCAAAGATACCCAAACGTCTCTG
TCAAAGTTTTATCGATTGGTGGTAGACAAAGAGGAAGTTCAAAAATGGAA
TGAACTGTTAAACCTTGGTTGTTCGAGTCcccattcaaaaattttgttca
attttgtGGCAGATTCGTTCCTGACTCAAATCCTTTGCCATTATGGGTCA
CAAGCAGAACTTGAGTCATTGGACATGGAGAAACTAAATCTTTCCAAGGA
CGAGGAACAAACACCGTATTATGTTGCTGGCTATCTTGTATTTTCATTGA
AGCAAAATTTGCGCACTTCCACCTCCGAACCAGACCCATTGGTTGCCCTC
TTAGATAGCTGGGGCTCAAGACAAAATTGCTCTTTGATGCAGCCCTTCCG
GAAGAAGATTCGTCGTTTTCAGATTTGCAAACTGTCTCATCTCTTCAAAA
GAAACCAGCCTCCATCAATACAAAAAGTACAACATCTCACgaatcaacaa
aatcaaacaaagctTTCGTCTCCTATCCAAAAAGATCAAACAATGTCAGA
AGAATATATGTTACCTTTTAAGAAGAAATCGTCTTCAAATGAAAATAGTA
CGTTTCCTTTTCCACTTGAGCCATCTTTATTAATTACATCTGCTGCATCT
CCTTTAGAAAGCAAAGCAACTCGGCCAATTAATTCTTTTTCATCGACCCA
ACAAGAACAATCCCATCATAGTGCTGCACCTAAA
Run BLAST on NCBI

protein sequence of TCONS_00056236-protein

>TCONS_00056236-protein ID=TCONS_00056236-protein|Name=TCONS_00056236-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
MEKLNLSKDEEQTPYYVAGYLVFSLKQNLRTSTSEPDPLVALLDSWGSRQ
NCSLMQPFRKKIRRFQICKLSHLFKRNQPPSIQKVQHLTNQQNQTKLSSP
IQKDQTMSEEYMLPFKKKSSSNENSTFPFPLEPSLLITSAASPLESKATR
PINSFSSTQQEQSHHSAAPK
Run BLAST on NCBI

transcript from alignment at scaffold_269:194667..195600

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056236 ID=TCONS_00056236|Name=TCONS_00056236|organism=Clytia hemisphaerica|type=transcript|length=934bp|location=Sequence derived from alignment at scaffold_269:194667..195600 (Clytia hemisphaerica)
TTTAGGTGCAGCACTATGATGGGATTGTTCTTGTTGGGTCGATGAAAAAG
AATTAATTGGCCGAGTTGCTTTGCTTTCTAAAGGAGATGCAGCAGATGTA
ATTAATAAAGATGGCTCAAGTGGAAAAGGAAACGTACTATTTTCATTTGA
AGACGATTTCTTCTTAAAAGGTAACATATATTCTTCTGACATTGTTTGAT
CTTTTTGGATAGGAGACGAAagctttgtttgattttgttgattcGTGAGA
TGTTGTACTTTTTGTATTGATGGAGGCTGGTTTCTTTTGAAGAGATGAGA
CAGTTTGCAAATCTGAAAACGACGAATCTTCTTCCGGAAGGGCTGCATCA
AAGAGCAATTTTGTCTTGAGCCCCAGCTATCTAAGAGGGCAACCAATGGG
TCTGGTTCGGAGGTGGAAGTGCGCAAATTTTGCTTCAATGAAAATACAAG
ATAGCCAGCAACATAATACGGTGTTTGTTCCTCGTCCTTGGAAAGATTTA
GTTTCTCCATGTCCAATGACTCAAGTTCTGCTTGTGACCCATAATGGCAA
AGGATTTGAGTCAGGAACGAATCTGCCacaaaattgaacaaaatttttga
atgggGACTCGAACAACCAAGGTTTAACAGTTCATTCCATTTTTGAACTT
CCTCTTTGTCTACCACCAATCGATAAAACTTTGACAGAGACGTTTGGGTA
TCTTTGACGATTATGTCCTTTTTAATCCTTTTTAATGTTCAACATGCTCT
TTTGAAGGTTGTGTAATCAATGAAAATGCAATTATTTTAGCTTAGGAGAA
AGTAAACCAGGTCATGTTTGGGCCTGTTGTATTAGGCCCTCGTATATCCT
CCAAAAAAGATACGGCACCCGGTAAGTAGCGTTTCAAATTTAACGAAATC
TGCTGGAGCGGAACAGAAACAGCTTACACCAAGG

Coding sequence (CDS) from alignment at scaffold_269:194667..195600

>TCONS_00056236 ID=TCONS_00056236|Name=TCONS_00056236|organism=Clytia hemisphaerica|type=CDS|length=510bp|location=Sequence derived from alignment at scaffold_269:194667..195600 (Clytia hemisphaerica)
TTTAGGTGCAGCACTATGATGGGATTGTTCTTGTTGGGTCGATGAAAAAG
AATTAATTGGCCGAGTTGCTTTGCTTTCTAAAGGAGATGCAGCAGATGTA
ATTAATAAAGATGGCTCAAGTGGAAAAGGAAACGTACTATTTTCATTTGA
AGACGATTTCTTCTTAAAAGGTAACATATATTCTTCTGACATTGTTTGAT
CTTTTTGGATAGGAGACGAAagctttgtttgattttgttgattcGTGAGA
TGTTGTACTTTTTGTATTGATGGAGGCTGGTTTCTTTTGAAGAGATGAGA
CAGTTTGCAAATCTGAAAACGACGAATCTTCTTCCGGAAGGGCTGCATCA
AAGAGCAATTTTGTCTTGAGCCCCAGCTATCTAAGAGGGCAACCAATGGG
TCTGGTTCGGAGGTGGAAGTGCGCAAATTTTGCTTCAATGAAAATACAAG
ATAGCCAGCAACATAATACGGTGTTTGTTCCTCGTCCTTGGAAAGATTTA
GTTTCTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035417XLOC_035417Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056236-exon-scaffold_269-1491911889:194667..195600TCONS_00056236-exon-scaffold_269-1491911889:194667..195600Clytia hemisphaericaexon
TCONS_00056236-exon-scaffold_269-1510915933:194667..195600TCONS_00056236-exon-scaffold_269-1510915933:194667..195600Clytia hemisphaericaexon
TCONS_00056236-exon-scaffold_269-1575043694:194667..195600TCONS_00056236-exon-scaffold_269-1575043694:194667..195600Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056236-proteinTCONS_00056236-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_269supercontigscaffold_269:194667..195600 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.122967	0.465205	0.136399	0	0.915614	0.365031	0.125827	0.497386	0.179955	0.376816	0.246259	0.0719581	0.164248	0.257879	0.124276	0.125484	0.23462	0.400669	0.255336	0.132597	0.168574	0.0769008	0.143205	0.143226	0.548846	0.679699	0.344733	0.333149	0.192755	0.0644345
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056236 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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