TCONS_00056209 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056209
Unique NameTCONS_00056209
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2256

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056209 ID=TCONS_00056209|Name=TCONS_00056209|organism=Clytia hemisphaerica|type=transcript|length=2256bp
TTATAGATAGAGAGAGAAGCTAGACTTGAAATCAACTTTAACATGGAAAA
TGTAAACAATTCAACGCAACTAGAgatctttctttgaaaatttcagcatc
gtccccgtgtattcaaGGCTCCTATAGACTTCAGCGAAAATTATCTGACC
CTAATAGTAAGCCGATAATACTTGGGATCAAGTTTGTGGAAATCTAATCT
GAAAAtgtttgttcttattttaggaGTAAAATTCAAGTTATAGAAAACTC
ATCTTGACAACTGAACCTACCAAGAAAGGAATACGCAAAAATGAAATCAC
AACTGACATTTTTCTCGATAATCACATTGCTGTCAACTACGTCAGATGCC
ATTAACTTTGACGATGCAGAATCGAGATTGCACGAAGATCTGACGAAAGG
TTACAACACAATTATTCGACCCGTAAAGCATCCTTCAGATAAGATCGAAG
TCAAGTTTGATCTCGCTCTACAACAAATTGTAGAAGTTAATGAGAAATCG
GAATCATTAGTGGTCAGTGTATTTTTACGACAATATTGGACGGATGTCAA
GTTGAAATGGAATGTATCCGATTATGGAAATATCTCTTCAACAAAATTCA
AACCTGATTCCATTTGGGTACCAGACCTCATGTTGTATAATAAtGCGGAG
AAGGATGACAACTTTGGAGGAAGTCTAGATCAGCTCCCCACTCGTGTAAT
GGTTAATCACGAAGGATCTGTCACTTGGCTAGCTCCAGCTATCATTACAG
GGAAATGCCCTATGAACATTCGGTATTTTCCTTTCGACACACAAAGTTGT
CGATTCAAATTCGGTTCATGGGCATATCATGGTGATGAAATTGATTTACA
GGCAGCTAGAGATGAAAACACATTTGATTTGGGATCATATTCTGAGCATT
CGGAATGGACAATTAAAGACGCATACCTCAAACGGAACGTTCTTCGTTAT
GGTTGCTGTCCTGAACCTTATCCTGATGTCACTGTTGAATTAAAGTTGAA
ACGAAAACCTCTGTTTTACGTATTGAATCTATTGCTACCAATGATTTTTA
TTGGTGTTTTGACGCTTCTGGCTTTCTTCCTACCAGCTGAATCGGGTGAA
AGAATTTCGTTTGCTGTCACACTCATGTTGGCTTTGACTGTTTTCATGTT
GATTGTAGCAGAGATGATCCCCGCCAGCTCGGAAAGCGTCCCAATGCTTG
GTATATTTTTCActtgtgttatgatcgaaatgGTTTTGATGGTATTCGCT
ATGTGTTACACATTGAATCTACATTTCAAAGAACCTAATTCCGAAAACCG
TATCGGGAAATGGACACGGGCTATCGTTTACAACCGATTAGCAATCTATC
TCGGTGTACGAAAACGGGAGAAGAAATTCGCTAACGTCAATGGTCACGTT
AAAGCTAACGGGCACGTGAACGGCAATGCGGGTTACGTCAAAGATGAGGT
AGAGGACGTCGCTCTAAAAGAGAATAATACTGTTCGTTTTAAAGAGTCCA
ATCATAATCACGATGAGCCTGACTCCGAATTGGAAAGCACAGCGGCTAGA
CTAATGAAAAAGAGTATAAAAATGGCCGAGGACAAAGCTCGCGAAGAAGA
TAttgagaaaattattaaaaaagaacTTGTTGCTTGTGCGAAAACTTTTG
ATGTGCTTTGCTTGATCATGTTTGCATTTATGTTTGGAATGATCTTGTTG
ATTTATCTGCTTAATACTGATGTTTGATTGGTTGTTGCGATGGGCAAATA
TTAcgtaatcggattaattttcacgagccaaaaaatcacaatattttttg
aattttatttcgtGAATcagtgttttgaaaaatttcgcgagtttcatttt
tgcaaaaaaaggcaaaaatttgcaaaaacgcgaaaatttatccgaTATAA
AAAACACCAAACGACCAGCTGTACTGGTAGACATTGAAACGAAGAATTAA
TCATGAACTCGTAAATGCAAAATATGTAAAAacagtaaaattttaattaa
agtcATATTTTATCTTAAgggattttgaaataaaaacttttcagtattaa
ataataattttttccatATGCTCAAAAGTTATGTTTAAATATATCTTTGA
TTATATAGTAAAATCTATTTTGATATCTACATTATTATGCAATAGTCAAC
GGTTACGTTTATTttctaagaacaaactatacataaACTTACCGAAATAC
CGTGTTCCCATCAAAAATTGGCTGAATCTGGCAATCCcagaaattaagaa
aattta
Run BLAST on NCBI

protein sequence of TCONS_00056209-protein

>TCONS_00056209-protein ID=TCONS_00056209-protein|Name=TCONS_00056209-protein|organism=Clytia hemisphaerica|type=polypeptide|length=478bp
MKSQLTFFSIITLLSTTSDAINFDDAESRLHEDLTKGYNTIIRPVKHPSD
KIEVKFDLALQQIVEVNEKSESLVVSVFLRQYWTDVKLKWNVSDYGNISS
TKFKPDSIWVPDLMLYNNAEKDDNFGGSLDQLPTRVMVNHEGSVTWLAPA
IITGKCPMNIRYFPFDTQSCRFKFGSWAYHGDEIDLQAARDENTFDLGSY
SEHSEWTIKDAYLKRNVLRYGCCPEPYPDVTVELKLKRKPLFYVLNLLLP
MIFIGVLTLLAFFLPAESGERISFAVTLMLALTVFMLIVAEMIPASSESV
PMLGIFFTCVMIEMVLMVFAMCYTLNLHFKEPNSENRIGKWTRAIVYNRL
AIYLGVRKREKKFANVNGHVKANGHVNGNAGYVKDEVEDVALKENNTVRF
KESNHNHDEPDSELESTAARLMKKSIKMAEDKAREEDIEKIIKKELVACA
KTFDVLCLIMFAFMFGMILLIYLLNTDV
Run BLAST on NCBI

transcript from alignment at scaffold_269:202299..207971-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056209 ID=TCONS_00056209|Name=TCONS_00056209|organism=Clytia hemisphaerica|type=transcript|length=5673bp|location=Sequence derived from alignment at scaffold_269:202299..207971- (Clytia hemisphaerica)
TTATAGATAGAGAGAGAAGCTAGACTTGAAATCAACTTTAACATGGAAAA TGTAAACAATTCAACGCAACTAGAGATCTTTCTTTGAAAATTTCAGCATC GTCCCCGTGTATTCAAGGCTCCTATAGACTTCAGCGAAAATTATCTGACC CTAATAGTAAGCCGATAATACTTGGGATCAAGTTTGTGGAAATCTAATCT GAAAATGTTTGTTCTTATTTTAGGAGTAAAATTCAAGTTATAGAAAACTC ATCTTGACAACTGAACCTACCAAGAAAGGAATACGCAAAAATGAAATCAC AACTGACATTTTTCTCGATAATCACATTGCTGTCAACTACGTCAGGTAAG AATTTTCTATGATAGATGGATAGGTCCCGGGCGGGGGATAGGTCATGCCT TGGAATGGAATGGAAAAGTTTCCCGAGAGAGGGTACTTTGGAAAATGATG GGTATGCGCGAACCGTACCGTACCTTCAACATGCAATCCTTAAAGAGACA ATTTTCTGCCATAAATGGTTCTTAAGCGCCAATTTACTTCTGGAACGTAT AATTTAACTCTGAGTTTCAACACGAGACTCGGATATCAGAATCCAAAAGA TCAAATTGTTTCAATATTAAGGCTGAAAATATAGCCTAAAAGCCATTAAA CCCCTCCAAAAATGAAATATCCAAATTAAATAAAGTGAACTGAAAGTACT AAATTGCAATACTCGCCCAAACTTTATATCCTAAAAAAGTTAAAATTCTA ACATCATCAGTTCTTGAATTGTCATACTTCAGATGAGAATGTTTGAATCA TTTATGAACATTCAAATGGTTTATTATTAATCATCAATATGTTTCGAATT AATTCGTAGATGCCATTAACTTTGACGATGCAGAATCGAGATTGCACGAA GATCTGACGAAAGGTTACAACACAATTATTCGACCCGTAAAGCATCCTTC AGATAAGATCGAAGTCAAGTTTGATCTCGCTCTACAACAAATTGTAGAAG TTGTAAGTATCTATACCAACTGGTAAGAAATTACCATAGAATGATAGCAC CACCAAATTCTGAAACTTTAGCGTTGTTTCCAAAACATTGTCAAATATCA CAGCTTTTCCGTTGCAAAATTTGACAACGCTTGTCTTTGAACAAAGAACG GGGTCAGGCTGAGGAACAGGGTTTCCAAATCATGTGCATTTTGTTGGCCA ATCCAAAAGTAAACATTCTTGGGTATTAATAATTTTTTTATCTTACTAGT AGACTTCGATTTGAAGCATTGTGTAGAATACCGTTGTTTTTTATACTTTC CCATTTCCGCACTAAGATTCTTGTCATTTTTCCGGAATCTTTCCCTTATT TTTTCCGGAATAACCGGCATGAGATTTGAAAGAGTTTGTTTCTAAAGGTA CGGAAAATCTTGTCCATTCATATCACCACACCATCCCCACTGGAATTTTT CGACTTAGGAACAATATAATTTTTATCCCCATTGGAATTTCGATAGAAAT TTTATCTTCGTTGTGAGAAAAACTTTCACCGGGGCTGTGAGACAGGGGAG TTATCTGGATGAAGGGAAAAAGAATGAAGGAAGCTCTTATTCTCCAATAC TTTCACTAAATACATGTTTTTTCTTTCATAAGCATAACGTTTATAAGCAT ACGCAGGCTCAGCTTTGGGTACCTAACCAATGGCTCTATTGTTTGAGAAC AATAGAATGCTAAGCATAATGCGAGCCTGGTAGGGACAGAAACTTGCTTT TATAAAAAAACAAATAGATTCAAGTCCAGAATTTTATTTTCTTATTAATT ATTTCACAGAATGAGAAATCGGAATCATTAGTGGTCAGTGTATTTTTACG ACAATATTGGACGGATGTCAAGTTGAAATGGAATGTATCCGATTATGGAA ATATCTCTTCAACAAAATTCAAACCTGATTCCATTTGGGTACCAGACCTC ATGTTGTATAATAAGTAAGCATATTTTAATCACCCAACCTGCTAAGCTTT GAAAGCTCTCCAATTTTACACGCTCAATTATATTCGATAATATTGAAAGT CACCTTCAGCAAGAAACTCTCAAACAACGCTCTTCCGTTCAATACGCTCC CTTATTTGAAAAATTTAAATTTCCCTTGAAATTCGAATTTATAGAGAGCC TTTTTTTCTACGCGTCCAACAAAGAGCGCTAGTGATTACAAATGAATGTT TCCCAATGAAATCAGTCGGTTGAATAATCGAGAAAATTTGGAGTTATGAA TTTCCTTTTTTTGGCTTCTAAATTCGGCAGCCAGGGGCTTTTTAATAGAC TGGAAGGGCGCCAACAATTGAACTTTGCGCTATCAAAATTTTCAGAAAGT AAAGTTCAGTTAGAAGTACACTCTAGTCTATAGTAAAAAGCTGCCCAATG AAAATTTTACTGACCGATACTTTTTTCATCTTCAGTGCGGAGAAGGATGA CAACTTTGGAGGAAGTCTAGATCAGCTCCCCACTCGTGTAATGGTTAATC ACGAAGGATCTGTCACTTGGCTAGCTCCAGCTATCATTACAGGGAAATGC CCTATGAACATTCGGTATTTTCCTTTCGACACACAAAGTTGTCGATTCAA ATTCGGTTCATGGGCATATCATGGTGATGAAATTGATTTACAGGCAGCTA GAGATGAAAACACATTTGATTTGGGTAAGATTTAATTCCTTCATTTTGTA TGACTTGAAATTGGTTACTTTACGTAGGGAAGAAGTGACCTTGCAAATCA TACATTAGAGATTAGCTGTAGCCTAACCCTTTAACTATACTTCATTGGCA GGACCACGATACGAGTCTGAGTTAGGGGTTGCCAATTTCGCGAAACGAAG ATAGTTTGATAACTGGTAGCCCCCTTCTCCAGAGTGATAAAATTTTGGAA TTTAAGGCTAACTCATATGGCTCGATAGTGTTTTTTAGGCCACTTAATCG TCAAAATATTATAATTCAACGGGGCTCATAAATACGATGCTTGATGCCCC TGCTCAAAGAGACCAGGCTATCACAGACCTCTACAAAACCCGGAAGCACG AATTCGTTAGAGGATGCAAACAGCCTAGACTAGGGATTGAACCAACTATC TCACAATATAACCCCTTCTTTTGTGTCCACTTTTCAATTTACACGGCGCC CCTTGTTCTCAGGGATAAGAGTCTTCCAAGTTTTAATATCGTCTCCTTAA GGATCATACACGTTTTTTATAAGAACATCCAAAATTTTGAAGCCTCCAGA TGTTCTTAACTTTTTCAGTTTCAAGTCTAAATATATTCATGTCATGTTCT TATTTTGACCATTTTGTGGGTATTTTTGACCATTTTCCTAAAAGAGTCCA AAAAGGGTCCAAAAAGCCTTAAAAGGTTCTCTAAAAAAAGCGTCGATGAT TTTCGCACTAAGATTGAGTCAAATCTTAACCTTCCAAGTACGCAAAATCT TTTTAAAAAACGTGAAAATTTCTTTTTTATTTGAAATCCAGAACTAAAAA CAGTTTATGACCTTTTAAATCAAGTGGTCTGGAGTTATAGCTTTGAAGGG TTAATCAAATCAAGAATTTGAATCTACATCTTTTAGGATCATATTCTGAG CATTCGGAATGGACAATTAAAGACGCATACCTCAAACGGAACGTTCTTCG TTATGGTTGCTGTCCTGAACCTTATCCTGATGTCACTGTTGAATTAAAGT TGAAACGAAAACCTCTGTTTTACGTATTGAATCTATTGCTACCAATGATT TTTATTGGTGTTTTGACGCTTCTGGCTTTCTTCCTACCAGCTGAATCGGG TAAGTTACTTGAATGTCTTAGAATGAAATATCATGGTTTGATTGACTTTA GATTGGATAGTAGAGTCTTTTTAACTCCAACCTCCATAACTCGAATGTCT CCTTAACTCGAACAAACTTTCCTCGTTTTATAGACCCTGCTCCATAACTC GAAATTTCCTTAACTCGAACAAATTTATGTTACTCATGAGTCTTCGGGTT ATGGAGAATCCACTGTATTTTTATCCCTCCTGATAACCATCAAAAGTTCG ACAATTTTACTAAGTGGAGATATTATCGGCCCTTTTTAAGCCTAATTTTG GGCTTACGCCAATTAGGGCCGTTAATAACGCCGAAATTTGTAAAAATGGC TACTAATACTTCAAGTTAGTAAATAATGACTAAAATTTACATTAAAATGT CATTTTTCAGTAGTAAACTGTTGAAAATTCCATCCAAAATTACTGAGTTT TAAATATATTAAATATTTCGCTGAAGTTTTAAATATGGAGTAAAACAATG GATAATTTTCGTCTTCGAATCATACCTAAAACCGCTTTTAGGTTAAAATT GCTAAATCTTGGCCCTTTTTACGCCGGCCCTTATTACGCCACGAGCCCAA AAATAACGCTAATAAGGGCCTGTGTGAAAAGGGCCGATAAGGTATACGTT TTTTGGCTCTCAGTGTTTCGTATACTTTATAAGAAGATTACAAAAACTTT TCTTATTTGCAGGTGAAAGAATTTCGTTTGCTGTCACACTCATGTTGGCT TTGACTGTTTTCATGTTGATTGTAGCAGAGATGATCCCCGCCAGCTCGGA AAGCGTCCCAATGCTTGGTATATTTTTCACTTGTGTTATGATCGAAATGG TTTTGATGGTATTCGCTATGTGTTACACATTGAATCTACATTTCAAAGAA CCTAATTCCGAAAACCGTATCGGGAAATGGACACGGGCTATCGTTTACAA CCGATTAGCAATCTATCTCGGTGTACGAAAACGGGAGAAGAAATTCGCTA ACGTCAATGGTCACGTTAAAGCTAACGGGCACGTGAACGGCAATGCGGGT TACGTCAAAGATGAGGTAGAGGACGTCGCTCTAAAAGAGAATAATACTGT TCGTTTTAAAGAGTCCAATCATAATCACGATGAGCCTGACTCCGAATTGG AAAGCACAGCGGCTAGACTAATGAAAAAGAGTATAAAAATGGCCGAGGAC AAAGCTCGCGAAGAAGATATTGAGAAAATTATTAAAAAAGAACTTGTTGC TTGTGCGAAAACTTTTGATGTGCTTTGCTTGATCATGTTTGCATTTATGT TTGGAATGATCTTGTTGATTTATCTGCTTAATACTGATGTTTGATTGGTT GTTGCGATGGGCAAATATTACGTAATCGGATTAATTTTCACGAGCCAAAA AATCACAATATTTTTTGAATTTTATTTCGTGAATCAGTGTTTTGAAAAAT TTCGCGAGTTTCATTTTTGCAAAAAAAGGCAAAAATTTGCAAAAACGCGA AAATTTATCCGATATAAAAAACACCAAACGACCAGCTGTACTGGTAGACA TTGAAACGAAGAATTAATCATGAACTCGTAAATGCAAAATATGTAAAAAC AGTAAAATTTTAATTAAAGTCATATTTTATCTTAAGGGATTTTGAAATAA AAACTTTTCAGTATTAAATAATAATTTTTTCCATATGCTCAAAAGTTATG TTTAAATATATCTTTGATTATATAGTAAAATCTATTTTGATATCTACATT ATTATGCAATAGTCAACGGTTACGTTTATTTTCTAAGAACAAACTATACA TAAACTTACCGAAATACCGTGTTCCCATCAAAAATTGGCTGAATCTGGCA ATCCCAGAAATTAAGAAAATTTA

Coding sequence (CDS) from alignment at scaffold_269:202299..207971-

>TCONS_00056209 ID=TCONS_00056209|Name=TCONS_00056209|organism=Clytia hemisphaerica|type=CDS|length=8622bp|location=Sequence derived from alignment at scaffold_269:202299..207971- (Clytia hemisphaerica)
GTGAAAGAATTTCGTTTGCTGTCACACTCATGTTGGCTTTGACTGTTTTC
ATGTTGATTGTAGCAGAGATGATCCCCGCCAGCTCGGAAAGCGTCCCAAT
GCTTGGTATATTTTTCACTTGTGTTATGATCGAAATGGTTTTGATGGTAT
TCGCTATGTGTTACACATTGAATCTACATTTCAAAGAACCTAATTCCGAA
AACCGTATCGGGAAATGGACACGGGCTATCGTTTACAACCGATTAGCAAT
CTATCTCGGTGTACGAAAACGGGAGAAGAAATTCGCTAACGTCAATGGTC
ACGTTAAAGCTAACGGGCACGTGAACGGCAATGCGGGTTACGTCAAAGAT
GAGGTAGAGGACGTCGCTCTAAAAGAGAATAATACTGTTCGTTTTAAAGA
GTCCAATCATAATCACGATGAGCCTGACTCCGAATTGGAAAGCACAGCGG
CTAGACTAATGAAAAAGAGTATAAAAATGGCCGAGGACAAAGCTCGCGAA
GAAGATATTGAGAAAATTATTAAAAAAGAACTTGTTGCTTGTGCGAAAAC
TTTTGATGTGCTTTGCTTGATCATGTTTGCATTTATGTTTGGAATGATCT
TGTTGATTTATCTGCTTAATACTGATGTTTGAGATCATATTCTGAGCATT
CGGAATGGACAATTAAAGACGCATACCTCAAACGGAACGTTCTTCGTTAT
GGTTGCTGTCCTGAACCTTATCCTGATGTCACTGTTGAATTAAAGTTGAA
ACGAAAACCTCTGTTTTACGTATTGAATCTATTGCTACCAATGATTTTTA
TTGGTGTTTTGACGCTTCTGGCTTTCTTCCTACCAGCTGAATCGGTGCGG
AGAAGGATGACAACTTTGGAGGAAGTCTAGATCAGCTCCCCACTCGTGTA
ATGGTTAATCACGAAGGATCTGTCACTTGGCTAGCTCCAGCTATCATTAC
AGGGAAATGCCCTATGAACATTCGGTATTTTCCTTTCGACACACAAAGTT
GTCGATTCAAATTCGGTTCATGGGCATATCATGGTGATGAAATTGATTTA
CAGGCAGCTAGAGATGAAAACACATTTGATTTGGAATGAGAAATCGGAAT
CATTAGTGGTCAGTGTATTTTTACGACAATATTGGACGGATGTCAAGTTG
AAATGGAATGTATCCGATTATGGAAATATCTCTTCAACAAAATTCAAACC
TGATTCCATTTGGGTACCAGACCTCATGTTGTATAATAAATGCCATTAAC
TTTGACGATGCAGAATCGAGATTGCACGAAGATCTGACGAAAGGTTACAA
CACAATTATTCGACCCGTAAAGCATCCTTCAGATAAGATCGAAGTCAAGT
TTGATCTCGCTCTACAACAAATTGTAGAAGTTATGAAATCACAACTGACA
TTTTTCTCGATAATCACATTGCTGTCAACTACGTCAGGTGAAAGAATTTC
GTTTGCTGTCACACTCATGTTGGCTTTGACTGTTTTCATGTTGATTGTAG
CAGAGATGATCCCCGCCAGCTCGGAAAGCGTCCCAATGCTTGGTATATTT
TTCACTTGTGTTATGATCGAAATGGTTTTGATGGTATTCGCTATGTGTTA
CACATTGAATCTACATTTCAAAGAACCTAATTCCGAAAACCGTATCGGGA
AATGGACACGGGCTATCGTTTACAACCGATTAGCAATCTATCTCGGTGTA
CGAAAACGGGAGAAGAAATTCGCTAACGTCAATGGTCACGTTAAAGCTAA
CGGGCACGTGAACGGCAATGCGGGTTACGTCAAAGATGAGGTAGAGGACG
TCGCTCTAAAAGAGAATAATACTGTTCGTTTTAAAGAGTCCAATCATAAT
CACGATGAGCCTGACTCCGAATTGGAAAGCACAGCGGCTAGACTAATGAA
AAAGAGTATAAAAATGGCCGAGGACAAAGCTCGCGAAGAAGATATTGAGA
AAATTATTAAAAAAGAACTTGTTGCTTGTGCGAAAACTTTTGATGTGCTT
TGCTTGATCATGTTTGCATTTATGTTTGGAATGATCTTGTTGATTTATCT
GCTTAATACTGATGTTTGAGATCATATTCTGAGCATTCGGAATGGACAAT
TAAAGACGCATACCTCAAACGGAACGTTCTTCGTTATGGTTGCTGTCCTG
AACCTTATCCTGATGTCACTGTTGAATTAAAGTTGAAACGAAAACCTCTG
TTTTACGTATTGAATCTATTGCTACCAATGATTTTTATTGGTGTTTTGAC
GCTTCTGGCTTTCTTCCTACCAGCTGAATCGGTGCGGAGAAGGATGACAA
CTTTGGAGGAAGTCTAGATCAGCTCCCCACTCGTGTAATGGTTAATCACG
AAGGATCTGTCACTTGGCTAGCTCCAGCTATCATTACAGGGAAATGCCCT
ATGAACATTCGGTATTTTCCTTTCGACACACAAAGTTGTCGATTCAAATT
CGGTTCATGGGCATATCATGGTGATGAAATTGATTTACAGGCAGCTAGAG
ATGAAAACACATTTGATTTGGAATGAGAAATCGGAATCATTAGTGGTCAG
TGTATTTTTACGACAATATTGGACGGATGTCAAGTTGAAATGGAATGTAT
CCGATTATGGAAATATCTCTTCAACAAAATTCAAACCTGATTCCATTTGG
GTACCAGACCTCATGTTGTATAATAAATGCCATTAACTTTGACGATGCAG
AATCGAGATTGCACGAAGATCTGACGAAAGGTTACAACACAATTATTCGA
CCCGTAAAGCATCCTTCAGATAAGATCGAAGTCAAGTTTGATCTCGCTCT
ACAACAAATTGTAGAAGTTATGAAATCACAACTGACATTTTTCTCGATAA
TCACATTGCTGTCAACTACGTCAGGTGAAAGAATTTCGTTTGCTGTCACA
CTCATGTTGGCTTTGACTGTTTTCATGTTGATTGTAGCAGAGATGATCCC
CGCCAGCTCGGAAAGCGTCCCAATGCTTGGTATATTTTTCACTTGTGTTA
TGATCGAAATGGTTTTGATGGTATTCGCTATGTGTTACACATTGAATCTA
CATTTCAAAGAACCTAATTCCGAAAACCGTATCGGGAAATGGACACGGGC
TATCGTTTACAACCGATTAGCAATCTATCTCGGTGTACGAAAACGGGAGA
AGAAATTCGCTAACGTCAATGGTCACGTTAAAGCTAACGGGCACGTGAAC
GGCAATGCGGGTTACGTCAAAGATGAGGTAGAGGACGTCGCTCTAAAAGA
GAATAATACTGTTCGTTTTAAAGAGTCCAATCATAATCACGATGAGCCTG
ACTCCGAATTGGAAAGCACAGCGGCTAGACTAATGAAAAAGAGTATAAAA
ATGGCCGAGGACAAAGCTCGCGAAGAAGATATTGAGAAAATTATTAAAAA
AGAACTTGTTGCTTGTGCGAAAACTTTTGATGTGCTTTGCTTGATCATGT
TTGCATTTATGTTTGGAATGATCTTGTTGATTTATCTGCTTAATACTGAT
GTTTGAGATCATATTCTGAGCATTCGGAATGGACAATTAAAGACGCATAC
CTCAAACGGAACGTTCTTCGTTATGGTTGCTGTCCTGAACCTTATCCTGA
TGTCACTGTTGAATTAAAGTTGAAACGAAAACCTCTGTTTTACGTATTGA
ATCTATTGCTACCAATGATTTTTATTGGTGTTTTGACGCTTCTGGCTTTC
TTCCTACCAGCTGAATCGGTGCGGAGAAGGATGACAACTTTGGAGGAAGT
CTAGATCAGCTCCCCACTCGTGTAATGGTTAATCACGAAGGATCTGTCAC
TTGGCTAGCTCCAGCTATCATTACAGGGAAATGCCCTATGAACATTCGGT
ATTTTCCTTTCGACACACAAAGTTGTCGATTCAAATTCGGTTCATGGGCA
TATCATGGTGATGAAATTGATTTACAGGCAGCTAGAGATGAAAACACATT
TGATTTGGAATGAGAAATCGGAATCATTAGTGGTCAGTGTATTTTTACGA
CAATATTGGACGGATGTCAAGTTGAAATGGAATGTATCCGATTATGGAAA
TATCTCTTCAACAAAATTCAAACCTGATTCCATTTGGGTACCAGACCTCA
TGTTGTATAATAAATGCCATTAACTTTGACGATGCAGAATCGAGATTGCA
CGAAGATCTGACGAAAGGTTACAACACAATTATTCGACCCGTAAAGCATC
CTTCAGATAAGATCGAAGTCAAGTTTGATCTCGCTCTACAACAAATTGTA
GAAGTTATGAAATCACAACTGACATTTTTCTCGATAATCACATTGCTGTC
AACTACGTCAGGTGAAAGAATTTCGTTTGCTGTCACACTCATGTTGGCTT
TGACTGTTTTCATGTTGATTGTAGCAGAGATGATCCCCGCCAGCTCGGAA
AGCGTCCCAATGCTTGGTATATTTTTCACTTGTGTTATGATCGAAATGGT
TTTGATGGTATTCGCTATGTGTTACACATTGAATCTACATTTCAAAGAAC
CTAATTCCGAAAACCGTATCGGGAAATGGACACGGGCTATCGTTTACAAC
CGATTAGCAATCTATCTCGGTGTACGAAAACGGGAGAAGAAATTCGCTAA
CGTCAATGGTCACGTTAAAGCTAACGGGCACGTGAACGGCAATGCGGGTT
ACGTCAAAGATGAGGTAGAGGACGTCGCTCTAAAAGAGAATAATACTGTT
CGTTTTAAAGAGTCCAATCATAATCACGATGAGCCTGACTCCGAATTGGA
AAGCACAGCGGCTAGACTAATGAAAAAGAGTATAAAAATGGCCGAGGACA
AAGCTCGCGAAGAAGATATTGAGAAAATTATTAAAAAAGAACTTGTTGCT
TGTGCGAAAACTTTTGATGTGCTTTGCTTGATCATGTTTGCATTTATGTT
TGGAATGATCTTGTTGATTTATCTGCTTAATACTGATGTTTGAGATCATA
TTCTGAGCATTCGGAATGGACAATTAAAGACGCATACCTCAAACGGAACG
TTCTTCGTTATGGTTGCTGTCCTGAACCTTATCCTGATGTCACTGTTGAA
TTAAAGTTGAAACGAAAACCTCTGTTTTACGTATTGAATCTATTGCTACC
AATGATTTTTATTGGTGTTTTGACGCTTCTGGCTTTCTTCCTACCAGCTG
AATCGGTGCGGAGAAGGATGACAACTTTGGAGGAAGTCTAGATCAGCTCC
CCACTCGTGTAATGGTTAATCACGAAGGATCTGTCACTTGGCTAGCTCCA
GCTATCATTACAGGGAAATGCCCTATGAACATTCGGTATTTTCCTTTCGA
CACACAAAGTTGTCGATTCAAATTCGGTTCATGGGCATATCATGGTGATG
AAATTGATTTACAGGCAGCTAGAGATGAAAACACATTTGATTTGGAATGA
GAAATCGGAATCATTAGTGGTCAGTGTATTTTTACGACAATATTGGACGG
ATGTCAAGTTGAAATGGAATGTATCCGATTATGGAAATATCTCTTCAACA
AAATTCAAACCTGATTCCATTTGGGTACCAGACCTCATGTTGTATAATAA
ATGCCATTAACTTTGACGATGCAGAATCGAGATTGCACGAAGATCTGACG
AAAGGTTACAACACAATTATTCGACCCGTAAAGCATCCTTCAGATAAGAT
CGAAGTCAAGTTTGATCTCGCTCTACAACAAATTGTAGAAGTTATGAAAT
CACAACTGACATTTTTCTCGATAATCACATTGCTGTCAACTACGTCAGGT
GAAAGAATTTCGTTTGCTGTCACACTCATGTTGGCTTTGACTGTTTTCAT
GTTGATTGTAGCAGAGATGATCCCCGCCAGCTCGGAAAGCGTCCCAATGC
TTGGTATATTTTTCACTTGTGTTATGATCGAAATGGTTTTGATGGTATTC
GCTATGTGTTACACATTGAATCTACATTTCAAAGAACCTAATTCCGAAAA
CCGTATCGGGAAATGGACACGGGCTATCGTTTACAACCGATTAGCAATCT
ATCTCGGTGTACGAAAACGGGAGAAGAAATTCGCTAACGTCAATGGTCAC
GTTAAAGCTAACGGGCACGTGAACGGCAATGCGGGTTACGTCAAAGATGA
GGTAGAGGACGTCGCTCTAAAAGAGAATAATACTGTTCGTTTTAAAGAGT
CCAATCATAATCACGATGAGCCTGACTCCGAATTGGAAAGCACAGCGGCT
AGACTAATGAAAAAGAGTATAAAAATGGCCGAGGACAAAGCTCGCGAAGA
AGATATTGAGAAAATTATTAAAAAAGAACTTGTTGCTTGTGCGAAAACTT
TTGATGTGCTTTGCTTGATCATGTTTGCATTTATGTTTGGAATGATCTTG
TTGATTTATCTGCTTAATACTGATGTTTGAGATCATATTCTGAGCATTCG
GAATGGACAATTAAAGACGCATACCTCAAACGGAACGTTCTTCGTTATGG
TTGCTGTCCTGAACCTTATCCTGATGTCACTGTTGAATTAAAGTTGAAAC
GAAAACCTCTGTTTTACGTATTGAATCTATTGCTACCAATGATTTTTATT
GGTGTTTTGACGCTTCTGGCTTTCTTCCTACCAGCTGAATCGGTGCGGAG
AAGGATGACAACTTTGGAGGAAGTCTAGATCAGCTCCCCACTCGTGTAAT
GGTTAATCACGAAGGATCTGTCACTTGGCTAGCTCCAGCTATCATTACAG
GGAAATGCCCTATGAACATTCGGTATTTTCCTTTCGACACACAAAGTTGT
CGATTCAAATTCGGTTCATGGGCATATCATGGTGATGAAATTGATTTACA
GGCAGCTAGAGATGAAAACACATTTGATTTGGAATGAGAAATCGGAATCA
TTAGTGGTCAGTGTATTTTTACGACAATATTGGACGGATGTCAAGTTGAA
ATGGAATGTATCCGATTATGGAAATATCTCTTCAACAAAATTCAAACCTG
ATTCCATTTGGGTACCAGACCTCATGTTGTATAATAAATGCCATTAACTT
TGACGATGCAGAATCGAGATTGCACGAAGATCTGACGAAAGGTTACAACA
CAATTATTCGACCCGTAAAGCATCCTTCAGATAAGATCGAAGTCAAGTTT
GATCTCGCTCTACAACAAATTGTAGAAGTTATGAAATCACAACTGACATT
TTTCTCGATAATCACATTGCTGTCAACTACGTCAGGTGAAAGAATTTCGT
TTGCTGTCACACTCATGTTGGCTTTGACTGTTTTCATGTTGATTGTAGCA
GAGATGATCCCCGCCAGCTCGGAAAGCGTCCCAATGCTTGGTATATTTTT
CACTTGTGTTATGATCGAAATGGTTTTGATGGTATTCGCTATGTGTTACA
CATTGAATCTACATTTCAAAGAACCTAATTCCGAAAACCGTATCGGGAAA
TGGACACGGGCTATCGTTTACAACCGATTAGCAATCTATCTCGGTGTACG
AAAACGGGAGAAGAAATTCGCTAACGTCAATGGTCACGTTAAAGCTAACG
GGCACGTGAACGGCAATGCGGGTTACGTCAAAGATGAGGTAGAGGACGTC
GCTCTAAAAGAGAATAATACTGTTCGTTTTAAAGAGTCCAATCATAATCA
CGATGAGCCTGACTCCGAATTGGAAAGCACAGCGGCTAGACTAATGAAAA
AGAGTATAAAAATGGCCGAGGACAAAGCTCGCGAAGAAGATATTGAGAAA
ATTATTAAAAAAGAACTTGTTGCTTGTGCGAAAACTTTTGATGTGCTTTG
CTTGATCATGTTTGCATTTATGTTTGGAATGATCTTGTTGATTTATCTGC
TTAATACTGATGTTTGAGATCATATTCTGAGCATTCGGAATGGACAATTA
AAGACGCATACCTCAAACGGAACGTTCTTCGTTATGGTTGCTGTCCTGAA
CCTTATCCTGATGTCACTGTTGAATTAAAGTTGAAACGAAAACCTCTGTT
TTACGTATTGAATCTATTGCTACCAATGATTTTTATTGGTGTTTTGACGC
TTCTGGCTTTCTTCCTACCAGCTGAATCGGTGCGGAGAAGGATGACAACT
TTGGAGGAAGTCTAGATCAGCTCCCCACTCGTGTAATGGTTAATCACGAA
GGATCTGTCACTTGGCTAGCTCCAGCTATCATTACAGGGAAATGCCCTAT
GAACATTCGGTATTTTCCTTTCGACACACAAAGTTGTCGATTCAAATTCG
GTTCATGGGCATATCATGGTGATGAAATTGATTTACAGGCAGCTAGAGAT
GAAAACACATTTGATTTGGAATGAGAAATCGGAATCATTAGTGGTCAGTG
TATTTTTACGACAATATTGGACGGATGTCAAGTTGAAATGGAATGTATCC
GATTATGGAAATATCTCTTCAACAAAATTCAAACCTGATTCCATTTGGGT
ACCAGACCTCATGTTGTATAATAAATGCCATTAACTTTGACGATGCAGAA
TCGAGATTGCACGAAGATCTGACGAAAGGTTACAACACAATTATTCGACC
CGTAAAGCATCCTTCAGATAAGATCGAAGTCAAGTTTGATCTCGCTCTAC
AACAAATTGTAGAAGTTATGAAATCACAACTGACATTTTTCTCGATAATC
ACATTGCTGTCAACTACGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035391XLOC_035391Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056209-proteinTCONS_00056209-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056209-exon-scaffold_269-1575043694:207627..207971TCONS_00056209-exon-scaffold_269-1575043694:207627..207971Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1575043694:206970..207112TCONS_00056209-exon-scaffold_269-1575043694:206970..207112Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1575043694:206008..206162TCONS_00056209-exon-scaffold_269-1575043694:206008..206162Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1575043694:205298..205536TCONS_00056209-exon-scaffold_269-1575043694:205298..205536Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1575043694:204173..204385TCONS_00056209-exon-scaffold_269-1575043694:204173..204385Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1575043694:202299..203459TCONS_00056209-exon-scaffold_269-1575043694:202299..203459Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1510915933:207627..207971TCONS_00056209-exon-scaffold_269-1510915933:207627..207971Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1510915933:206970..207112TCONS_00056209-exon-scaffold_269-1510915933:206970..207112Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1510915933:206008..206162TCONS_00056209-exon-scaffold_269-1510915933:206008..206162Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1510915933:205298..205536TCONS_00056209-exon-scaffold_269-1510915933:205298..205536Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1510915933:204173..204385TCONS_00056209-exon-scaffold_269-1510915933:204173..204385Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1510915933:202299..203459TCONS_00056209-exon-scaffold_269-1510915933:202299..203459Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1491911889:207627..207971TCONS_00056209-exon-scaffold_269-1491911889:207627..207971Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1491911889:206970..207112TCONS_00056209-exon-scaffold_269-1491911889:206970..207112Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1491911889:206008..206162TCONS_00056209-exon-scaffold_269-1491911889:206008..206162Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1491911889:205298..205536TCONS_00056209-exon-scaffold_269-1491911889:205298..205536Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1491911889:204173..204385TCONS_00056209-exon-scaffold_269-1491911889:204173..204385Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1491911889:202299..203459TCONS_00056209-exon-scaffold_269-1491911889:202299..203459Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_269supercontigscaffold_269:202299..207971 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (3.72269 tpm) - - (23.4909 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.2361 15.6168 22.0438 23.4909 18.8499 13.0246 8.37719 8.00558 4.7126 6.09376 4.09238 3.72269 19.6162 16.7445 7.96681 4.12493 5.44211 4.82976 17.096 15.4166 6.99769 6.11902 13.8935 15.3157 5.35512 5.03495 19.8807 13.4871 4.46465 5.14211
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006201Neur_channel
IPR006029Neurotrans-gated_channel_TM
IPR006202Neur_chan_lig-bd
IPR018000Neurotransmitter_ion_chnl_CS
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
GO:0005230extracellular ligand-gated ion channel activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005230 extracellular ligand-gated ion channel activity
molecular_function GO:0005216 ion channel activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056209 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
2004006008001000120014001600180020002200Expect = 1.59e-83 / Id = 40.96SequenceACHA7
Match NameE-valueIdentityDescription
ACHA71.591e-8340.96Neuronal acetylcholine receptor subunit alpha-7 OS... [more]
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