TCONS_00056238 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056238
Unique NameTCONS_00056238
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length130

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056238 ID=TCONS_00056238|Name=TCONS_00056238|organism=Clytia hemisphaerica|type=transcript|length=130bp
AGGGGTTTGGATATCCAATAGACCAATATTCTCCACCTCTCACACTCTTA
CCGTACCGCAACTCTTACCTTACCAAATAGCAAAGTCTACTCCATTCAAA
ATATTTGGCCCTGAACCCCCTGGATGTCCG
Run BLAST on NCBI

transcript from alignment at scaffold_269:242684..242813

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056238 ID=TCONS_00056238|Name=TCONS_00056238|organism=Clytia hemisphaerica|type=transcript|length=130bp|location=Sequence derived from alignment at scaffold_269:242684..242813 (Clytia hemisphaerica)
CGGACATCCAGGGGGTTCAGGGCCAAATATTTTGAATGGAGTAGACTTTG
CTATTTGGTAAGGTAAGAGTTGCGGTACGGTAAGAGTGTGAGAGGTGGAG
AATATTGGTCTATTGGATATCCAAACCCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035419XLOC_035419Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056238-exon-scaffold_269-1491911889:242684..242813TCONS_00056238-exon-scaffold_269-1491911889:242684..242813Clytia hemisphaericaexon
TCONS_00056238-exon-scaffold_269-1510915933:242684..242813TCONS_00056238-exon-scaffold_269-1510915933:242684..242813Clytia hemisphaericaexon
TCONS_00056238-exon-scaffold_269-1575043694:242684..242813TCONS_00056238-exon-scaffold_269-1575043694:242684..242813Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_269supercontigscaffold_269:242684..242813 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056238 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top