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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056200 ID=TCONS_00056200|Name=TCONS_00056200|organism=Clytia hemisphaerica|type=transcript|length=432bp
aatctATGATGGAATGGACTACCGAAACAGTACCTTTACGTGAGGCGATC
AAGTTTGGacGTTTATTGGCCCGAATTTGCACAATTtgctggtaactaac
gaacgcaCTAACGCACCCACGAGCAAGTTCAACCCACGCGCACCCACGAG
GACACGAGCCTACGGACCCACCCACGACACGCACGCaacccacgtaattt
agcagactcgaaCATTTTCAGGCTGCGGAAATTCTTCAGCaaattaaact
gaaaataagaaaaaaggtTCCTCAGTCAATTGTGACGAATAAATTGAGAA
CACTGATTTGCTTTTCACTTTTACGTTCAACCGAAAGGTGTTTACGTGGA
TCACGGGGAAAGATATTCACCCcagaaaacattttatagattattatttt
actttttatctttcGAGTCTTTTCAGTTTCTT Run BLAST on NCBI transcript from alignment at scaffold_269:243320..244715+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056200 ID=TCONS_00056200|Name=TCONS_00056200|organism=Clytia hemisphaerica|type=transcript|length=1396bp|location=Sequence derived from alignment at scaffold_269:243320..244715+ (Clytia hemisphaerica)
aatctATGATGGAATGGACTACCGAAACAGTACCTTTACGTGAGGCGATC
AAGTTTGGgtaatttgtaaatagtattAATCATTGTACAAAACTAAAAAC
CGAAAGCAAAAATGCTCCAAAATCCATTTAAAGCTTTTATCCATAAAGCT
CAACGTTCTTCCCGGGAGCGTACATAGAGAGTGCATGTGTAAAGTTTGAT
TAATATTTTTAAGGTCTCGTTTTCCATCGAGGGCCTGTTTTTGCGGGGCC
CGCAAGGGATCCGTTTTAACCTCGTTCTCGGCCTCGGCTGAAATTTGTCC
AatatctttttctcaaaaatcaggctccatcaCATTCGAAGATTTacagt
tacacgttttttttttattagaacacctaaaatttggctgagcctggatg
gatgtgcttatttttttagaaattttcagcctaaaatgttcttaaatgcg
ttcttaatttttcagactagtctaaatcgacaatatcatgcaaaataaag
agcacttaagattggtaaaatttggacaatatttgactctcgattttaga
aaatctatccctaagttcagttaaaactgcttgaaaagaggaaataattg
tagtttcttgtcatttctttccaaactgaggctgggcatgttcttaagat
gttcttaatttttcgacgaatttcagcctcaatgttcttataaactgggt
tctaataaaaaaaaaacgtgtatgcatcTTGGAGCATCTCGAGAAAAACT
AATAAATGATAGGTAATTGAATAAGTGATTATAGAAAAGATTAAATTAGg
ccaattttcttataaaatacaTGTCTAGCAACCAGTATTTCGTGTCTATA
CacaaacattcttccaaattatGACTTAATGTAATGAGCAAATAATGATT
TATCTCGTCTAGAATTTGAGTACTTTGGTTAAGAACATCGACCTATGCTT
ATAAATACTGATTCTAATAGCTAAagattaatgatccaatttttcacaaa
gtccaaaaaacccgttttttagacGTTTATTGGCCCGAATTTGCACAATT
tgctggtaactaacgaacgcaCTAACGCACCCACGAGCAAGTTCAACCCA
CGCGCACCCACGAGGACACGAGCCTACGGACCCACCCACGACACGCACGC
aacccacgtaatttagcagactcgaaCATTTTCAGGCTGCGGAAATTCTT
CAGCaaattaaactgaaaataagaaaaaaggtTCCTCAGTCAATTGTGAC
GAATAAATTGAGAACACTGATTTGCTTTTCACTTTTACGTTCAACCGAAA
GGTGTTTACGTGGATCACGGGGAAAGATATTCACCCcagaaaacatttta
tagattattattttactttttatctttcGAGTCTTTTCAGTTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056200-exon-scaffold_269-1491911889:243320..243377 | TCONS_00056200-exon-scaffold_269-1491911889:243320..243377 | Clytia hemisphaerica | exon |
| TCONS_00056200-exon-scaffold_269-1510915933:243320..243377 | TCONS_00056200-exon-scaffold_269-1510915933:243320..243377 | Clytia hemisphaerica | exon |
| TCONS_00056200-exon-scaffold_269-1575043694:243320..243377 | TCONS_00056200-exon-scaffold_269-1575043694:243320..243377 | Clytia hemisphaerica | exon |
| TCONS_00056200-exon-scaffold_269-1491911889:244342..244715 | TCONS_00056200-exon-scaffold_269-1491911889:244342..244715 | Clytia hemisphaerica | exon |
| TCONS_00056200-exon-scaffold_269-1510915933:244342..244715 | TCONS_00056200-exon-scaffold_269-1510915933:244342..244715 | Clytia hemisphaerica | exon |
| TCONS_00056200-exon-scaffold_269-1575043694:244342..244715 | TCONS_00056200-exon-scaffold_269-1575043694:244342..244715 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_269 | supercontig | scaffold_269:243320..244715 + |
Blast
The following BLAST results are available for this feature:
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