TCONS_00056240 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056240
Unique NameTCONS_00056240
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length214

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056240 ID=TCONS_00056240|Name=TCONS_00056240|organism=Clytia hemisphaerica|type=transcript|length=214bp
cggcgcaccCAGCTACAGGCGGGGCGTCGGGCGGTAGCAAAAAGAACCCG
TTTTTTCCGCCCACGGGAAATCGCCACCCGCCCGTTACATGTCGGGTGTT
GTTAAGAGCGCCCAAGATGTAGCACCCGACAAagtgcacccgactgtcgg
gtgttgAAATTTCTAACTTCGAACACCCGAcaacagcacccgactgtcgg
gtgcaccggcaggg
Run BLAST on NCBI

transcript from alignment at scaffold_269:249448..249661

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056240 ID=TCONS_00056240|Name=TCONS_00056240|organism=Clytia hemisphaerica|type=transcript|length=214bp|location=Sequence derived from alignment at scaffold_269:249448..249661 (Clytia hemisphaerica)
ccctgccggtgcacccgacagtcgggtgctgttgTCGGGTGTTCGAAGTT
AGAAATTTcaacacccgacagtcgggtgcactTTGTCGGGTGCTACATCT
TGGGCGCTCTTAACAACACCCGACATGTAACGGGCGGGTGGCGATTTCCC
GTGGGCGGAAAAAACGGGTTCTTTTTGCTACCGCCCGACGCCCCGCCTGT
AGCTGggtgcgccg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035421XLOC_035421Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056240-exon-scaffold_269-1491911889:249448..249661TCONS_00056240-exon-scaffold_269-1491911889:249448..249661Clytia hemisphaericaexon
TCONS_00056240-exon-scaffold_269-1510915933:249448..249661TCONS_00056240-exon-scaffold_269-1510915933:249448..249661Clytia hemisphaericaexon
TCONS_00056240-exon-scaffold_269-1575043694:249448..249661TCONS_00056240-exon-scaffold_269-1575043694:249448..249661Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_269supercontigscaffold_269:249448..249661 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.259833	0	0	0.0425351	4.16036	0	0	0	4.8788	5.96402	7.45583	1.04485	1.17363	3.30098	0	0.605425	0	0	2.73656	0	0	0	0	0	4.08801	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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