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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056201 ID=TCONS_00056201|Name=TCONS_00056201|organism=Clytia hemisphaerica|type=transcript|length=2874bp
agggtcagggttgctagtaacggcttgtcactgtgccgggtgcatactcg
gcgccttgggccccgcagggttgctagtaacggctcgaatttcagtcagg
ctaaaagtcgatgtcggaatcagcagtagacaaccttcttttgagacctt
gtaattatcctctcCCGCTTGATCGTCTGCTACGCGAcctggaaaagttt
tgaaaggagGAAAAGGTGCATATTGTTGTATACCCGAATGCAAGAGCAGC
TTTTATAACAGTGACATGACCAAAACTGAAATTGGATTTTTCAAGATCCC
AACTAACCctaaacaaaatcaagaatggAAACGAATCATTTACCGGTATC
GACGAAAGGGAGGAAAAGATAAGTTCAAAATCACATCTTCAACAGTTATC
TgtgaatttcattttaaagcagAGGACATTAAAGTCACCCTTGGAACACA
TAAAAAGGTTTTAAGGAAAGGAGCAATACCAAGagtgttttcttttaaaa
agccgAAAAAAGTAACATCAAGAAAATCACCTAAAAAACGTTTATCCAAA
ATTTTCGACGATCCTGCTTGTAATACGATTCAAAAGGAGCCCGAGAATAG
AAACGTCAATGATATAAACAATGAAGTAAACGAGATCAATGAACTGAAAC
AAAGAATTGAGGAACTTGAACAagaaaatttatctttaaaacTTGAAGTA
GAATTNTATCTCACGTAACGAAAAATCTGCTAGTTCAAATAACAGAGCCA
TTATATGATTGCAATACGAAGAATTGCCTGCAGCACAATCACACGTTCCA
CTGAAAACTTCTCCATTAAGTCTATTTAGAACAACttccaaatgtttttt
tttcttgtatcATGCTCGATCTACATTCAGCTTTGACAGTAAAAAATAGT
GAGGAAGTCTTTGTATACATTTGATCTTTTATAACATATCCttcgttttt
gaattttaaacctTGATCTCTTGTTTTGATGATTGATCGTGCATTTTTGC
CACTCTTTTGTCGATGTAATTCGATCTctctttttgtaaacaaaggaaGA
TTAGTTAAATGTTTAGTCCattcaatgttttgttctttttcaaCAATAAT
TTCAATAGAAGATCTTTCAGTGTTTAGAAGAAGTTCATCCAAAAGCTCTT
GAACAGCACCGCTTTCGTTCGCCATTTTGTATAATGTTTACAAAATATCA
TTGCTGGCCTCGTTTTCATGCCGCGCAAAaacatctcgagaagagtgtat
tactCTCTCATGGCCAGTCTCCACTtccgcgcgctgcgatcgcataTTTT
TTGGCTTTAATCCACTTTTACTTtggcttggaaaaaagattacgtcataa
aaatgtaacgcgcactcgaaaaagtgcgatcgagaAACGCAtgcaagtgg
agaccgacctTTCTCGTCAAACCAATTCTTTGGTGGGTGAAACAATGTGA
GTTCCGGTTCTCGGGCTTTGATGTTCTTGGGAGAAGTTAACGGATTAAcg
cttttcttttctttttatttatgcGTGATAAACGACGGTAAAACGACGAA
ACGACGGAGACAAATAGAGATGTTTCATCAATGAGTCATTATCAACGCAA
ACTTCACTAAGGTAGGCTTTCAAAGTGCCCAGTAGAAAACTATTCTGTTC
TAGGGTATTAAAGTTATCTAGGTAGGTTTTCCCACTTTTACCTACCTGAA
AATCGTGTgtctttaaatttttaagtACTATTCAATTTGTCTGAGCTGAG
TGAGTAGCTTTGTCAACTGGACGCTATATATTACCTGGGTTTTCGTTTTG
TAACGATACACTATATGCCGAATTTTTTGTTCTATATATTTAGTGTACCA
CCACCATTCTTGTACAAGCAACCATTGCGTACATACAAAATGTTTGGATG
GCTGGGGACAACGTGCGTGTTGCTCAAAAGAAGAAACTGGAACAACCTTT
TTTTATTGATTAACAATAATTTATAGACCATGTTCAAACCAGTTCAGACG
TTACAGTTTCATGTCATATctttcatattggtttcggagcaagaaagcgg
agcagttccgttccgatgaaaatagtggaacaaaaccgtttcgatctaTT
TTGCTTTATATGTAACGTCTTCAAATTTTGGCGTTCACACGTTCacacgg
aaccgtaacgtctgaacatggtcttacaaacaatctttgaaatacataca
attaaaaatatgtaaaattataaattataagGCTATTTGATCACCAATAA
CAATGCATTTCCTCTGTTTTCTTCCTGAAGGAGATAGAAAGTAGAAAGAT
TAACTAATAGACTACCGTCCTCTATTTTAAATCTCTTGTCTATCCACAGC
TTTAGTAtccattatgtctgagattatAAAAGCCcgataaaatattttca
aaagtatcCTTAGATTaaccaatttgaaaaaaagtcattcCTCTCTCCAC
GCACCTACGTACGTCGTTAATGCGGAATCACGTATCTACACAGACCATTT
AGAACGCCATAGAAATTACGTCATCATGAAACTAAATATCAGATGAGATT
GAGCCATTTATATTATGATATTAAAGGTAATATACGTCTTACCTGGAAAA
ACCAACACGTCAGCGTGTTTTGTCATCACAATGTAAGactaaaaagaaca
aaagaagagagaaaaagcgAGCGGAATGTCATGCCTCAAACCTAAACACG
GATAAATAGATTGAACATCGAGTGCAGGCTCGAATTTAAGAATATCGATA
CGAAACATTGATATGATCAAAGTACAGAATCAAAAGAAAGACACGACAAA
TCTTTTACGATAACGGCTAATTACAGTTCACCACACTAAAATGTAAATAT
CTAATTGATTACCTGTTTCGCTAT Run BLAST on NCBI transcript from alignment at scaffold_269:250441..253314+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056201 ID=TCONS_00056201|Name=TCONS_00056201|organism=Clytia hemisphaerica|type=transcript|length=2874bp|location=Sequence derived from alignment at scaffold_269:250441..253314+ (Clytia hemisphaerica)
agggtcagggttgctagtaacggcttgtcactgtgccgggtgcatactcg
gcgccttgggccccgcagggttgctagtaacggctcgaatttcagtcagg
ctaaaagtcgatgtcggaatcagcagtagacaaccttcttttgagacctt
gtaattatcctctcCCGCTTGATCGTCTGCTACGCGAcctggaaaagttt
tgaaaggagGAAAAGGTGCATATTGTTGTATACCCGAATGCAAGAGCAGC
TTTTATAACAGTGACATGACCAAAACTGAAATTGGATTTTTCAAGATCCC
AACTAACCctaaacaaaatcaagaatggAAACGAATCATTTACCGGTATC
GACGAAAGGGAGGAAAAGATAAGTTCAAAATCACATCTTCAACAGTTATC
TgtgaatttcattttaaagcagAGGACATTAAAGTCACCCTTGGAACACA
TAAAAAGGTTTTAAGGAAAGGAGCAATACCAAGagtgttttcttttaaaa
agccgAAAAAAGTAACATCAAGAAAATCACCTAAAAAACGTTTATCCAAA
ATTTTCGACGATCCTGCTTGTAATACGATTCAAAAGGAGCCCGAGAATAG
AAACGTCAATGATATAAACAATGAAGTAAACGAGATCAATGAACTGAAAC
AAAGAATTGAGGAACTTGAACAagaaaatttatctttaaaacTTGAAGTA
GAATTNTATCTCACGTAACGAAAAATCTGCTAGTTCAAATAACAGAGCCA
TTATATGATTGCAATACGAAGAATTGCCTGCAGCACAATCACACGTTCCA
CTGAAAACTTCTCCATTAAGTCTATTTAGAACAACttccaaatgtttttt
tttcttgtatcATGCTCGATCTACATTCAGCTTTGACAGTAAAAAATAGT
GAGGAAGTCTTTGTATACATTTGATCTTTTATAACATATCCttcgttttt
gaattttaaacctTGATCTCTTGTTTTGATGATTGATCGTGCATTTTTGC
CACTCTTTTGTCGATGTAATTCGATCTctctttttgtaaacaaaggaaGA
TTAGTTAAATGTTTAGTCCattcaatgttttgttctttttcaaCAATAAT
TTCAATAGAAGATCTTTCAGTGTTTAGAAGAAGTTCATCCAAAAGCTCTT
GAACAGCACCGCTTTCGTTCGCCATTTTGTATAATGTTTACAAAATATCA
TTGCTGGCCTCGTTTTCATGCCGCGCAAAaacatctcgagaagagtgtat
tactCTCTCATGGCCAGTCTCCACTtccgcgcgctgcgatcgcataTTTT
TTGGCTTTAATCCACTTTTACTTtggcttggaaaaaagattacgtcataa
aaatgtaacgcgcactcgaaaaagtgcgatcgagaAACGCAtgcaagtgg
agaccgacctTTCTCGTCAAACCAATTCTTTGGTGGGTGAAACAATGTGA
GTTCCGGTTCTCGGGCTTTGATGTTCTTGGGAGAAGTTAACGGATTAAcg
cttttcttttctttttatttatgcGTGATAAACGACGGTAAAACGACGAA
ACGACGGAGACAAATAGAGATGTTTCATCAATGAGTCATTATCAACGCAA
ACTTCACTAAGGTAGGCTTTCAAAGTGCCCAGTAGAAAACTATTCTGTTC
TAGGGTATTAAAGTTATCTAGGTAGGTTTTCCCACTTTTACCTACCTGAA
AATCGTGTgtctttaaatttttaagtACTATTCAATTTGTCTGAGCTGAG
TGAGTAGCTTTGTCAACTGGACGCTATATATTACCTGGGTTTTCGTTTTG
TAACGATACACTATATGCCGAATTTTTTGTTCTATATATTTAGTGTACCA
CCACCATTCTTGTACAAGCAACCATTGCGTACATACAAAATGTTTGGATG
GCTGGGGACAACGTGCGTGTTGCTCAAAAGAAGAAACTGGAACAACCTTT
TTTTATTGATTAACAATAATTTATAGACCATGTTCAAACCAGTTCAGACG
TTACAGTTTCATGTCATATctttcatattggtttcggagcaagaaagcgg
agcagttccgttccgatgaaaatagtggaacaaaaccgtttcgatctaTT
TTGCTTTATATGTAACGTCTTCAAATTTTGGCGTTCACACGTTCacacgg
aaccgtaacgtctgaacatggtcttacaaacaatctttgaaatacataca
attaaaaatatgtaaaattataaattataagGCTATTTGATCACCAATAA
CAATGCATTTCCTCTGTTTTCTTCCTGAAGGAGATAGAAAGTAGAAAGAT
TAACTAATAGACTACCGTCCTCTATTTTAAATCTCTTGTCTATCCACAGC
TTTAGTAtccattatgtctgagattatAAAAGCCcgataaaatattttca
aaagtatcCTTAGATTaaccaatttgaaaaaaagtcattcCTCTCTCCAC
GCACCTACGTACGTCGTTAATGCGGAATCACGTATCTACACAGACCATTT
AGAACGCCATAGAAATTACGTCATCATGAAACTAAATATCAGATGAGATT
GAGCCATTTATATTATGATATTAAAGGTAATATACGTCTTACCTGGAAAA
ACCAACACGTCAGCGTGTTTTGTCATCACAATGTAAGactaaaaagaaca
aaagaagagagaaaaagcgAGCGGAATGTCATGCCTCAAACCTAAACACG
GATAAATAGATTGAACATCGAGTGCAGGCTCGAATTTAAGAATATCGATA
CGAAACATTGATATGATCAAAGTACAGAATCAAAAGAAAGACACGACAAA
TCTTTTACGATAACGGCTAATTACAGTTCACCACACTAAAATGTAAATAT
CTAATTGATTACCTGTTTCGCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056201-exon-scaffold_269-1491911889:250441..253314 | TCONS_00056201-exon-scaffold_269-1491911889:250441..253314 | Clytia hemisphaerica | exon |
| TCONS_00056201-exon-scaffold_269-1510915933:250441..253314 | TCONS_00056201-exon-scaffold_269-1510915933:250441..253314 | Clytia hemisphaerica | exon |
| TCONS_00056201-exon-scaffold_269-1575043694:250441..253314 | TCONS_00056201-exon-scaffold_269-1575043694:250441..253314 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_269 | supercontig | scaffold_269:250441..253314 + |
Blast
The following BLAST results are available for this feature:
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