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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056205 ID=TCONS_00056205|Name=TCONS_00056205|organism=Clytia hemisphaerica|type=transcript|length=664bp
GGTACGAAAAAGATCTAACCAACCAACCAACAACAACAAGTATTGATACA
AAGGATGCTTCAAAACCTGTCCCAGCAAGATCACCTATCGAGTGTGTTTT
GAAATGCAAGAGAAATCTCCAAGAAAGTTATTTCGTTGAAGAGAAACAAC
TTtgtttttgctttcaaagtaaAGAACAAGATTTATTTCCggatgatgaa
aatgaaaatttagatgGAGCTTCGTTCCAGGAGCACAAGGAGCACATGca
ATGTGGAAGTGAAATGAAGAACTGCAAAGACGTCAAAGAGATTTGTCCAT
ATTGCAAATCAGCAATTTATGAAATGGAAATTCTTGGTGAAAAAACGAAA
GCCTTTTGTGACTTGACTACAGACAGTGGCGGTTGGCTGCAAATAACAAA
TATCAAATTCGACGACGCAAACAAAATCGATTCAATCTATACAAATCACA
TAGCTCAGCCATCGTCTATCACTGACCTCCAAAATGCACCAAACTCGCAA
TTCATGTTGGACCCACTTGCCTTACAAAGCCTTTTCAATGACGAAGGTTA
CAGCGAGCTAAGAATCAAATGCTATAAACCATGGCACGGCAGAACCCTTG
ACGTCGTTCTATACGGTGAAAAGATACACAAATATGTAAATAGCGAAGCG
CGGACCCTCGGTGG Run BLAST on NCBI transcript from alignment at scaffold_269:301549..303049+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056205 ID=TCONS_00056205|Name=TCONS_00056205|organism=Clytia hemisphaerica|type=transcript|length=1501bp|location=Sequence derived from alignment at scaffold_269:301549..303049+ (Clytia hemisphaerica)
GGTACGAAAAAGATCTAACCAACCAACCAACAACAACAAGTATTGATACA
AAGGATGCTTCAAAACCTGTCCCAGCAAGATCACCTATCGAGTGTGTTTT
GAAATGCAAGAGAAATCTCCAAGAAAGTTATTTCGTTGAAGAGAAACAAC
TTtgtttttgctttcaaagtaaAGAACAAGATTTATTTCCggatgatgaa
aatgaaaatttagatgGAGCTTCGTTCCAGGAGCACAAGGAGCACATGGT
AAGCAAAATTTTGTATAGGAGCAACTTTTAAGAACAACGAgactcaaaaa
tgccaaaaattgcaaaaatagatcttatcggagtttttcaTTTCTCTGAA
AAAGCGTtccattgtgggattgtttcgggagtattacaatagaattccct
cgaggaattcctaagagatttctattgtaatattcccgaaacaatcccac
aatgcatcgcttttttagaaaaattagaaactccgataagatctattgtc
aacggacccttagagagaccaaagcTTACCGTCATAATACCCATCATCTA
TTTTTGCCAGAGTACCCCCTCCCCTCGGTCTCGGGCTTGATAGAGGCAGG
AAATTGCTGCTCTCAGTCCcctggttttaattttttttctttagcaATGT
GGAAGTGAAATGAAGAACTGCAAAGACGTCAAAGAGATTTGTCCATATTG
CAAATCAGCAATTTATGAAATGGAAATTCTTGGTGAAAAAACGAAAGCCT
TTTGTGACTTGACTACAGACAGTGGTAAGATATTTTCGATTTAATTTTTC
GTCCAACGAATGTGCCAGCCCATAGTGCTTAGTTCACTAATTTAAGCTAT
CCAAACAAAATATTTGGAAGGTAACAAAATATATAATAGGTCATTCATTC
GATCAAAACACAAGCCCCTAAAAATGTCGAATCGCAAAAGgttaaagttt
ttgtttttacataagtgttcccgtttcatatcagacacatatatctcata
tcagggcagtgtctgccttttgttatattatgccgatataagcaaaaaaa
aattttcccctcccctttctgaccaatcttactCCACATCCTTGTCAATC
TAATgtgaaaaaacttgtaaattaaaattgatgagtaagcaaccgatatc
actcttatttaaaaacaaaaactttaaaagaaatgttaagattttttaat
cgaacatttttatagGCGGTTGGCTGCAAATAACAAATATCAAATTCGAC
GACGCAAACAAAATCGATTCAATCTATACAAATCACATAGCTCAGCCATC
GTCTATCACTGACCTCCAAAATGCACCAAACTCGCAATTCATGTTGGACC
CACTTGCCTTACAAAGCCTTTTCAATGACGAAGGTTACAGCGAGCTAAGA
ATCAAATGCTATAAACCATGGCACGGCAGAACCCTTGACGTCGTTCTATA
CGGTGAAAAGATACACAAATATGTAAATAGCGAAGCGCGGACCCTCGGTG
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056205-exon-scaffold_269-1491911889:301549..301796 | TCONS_00056205-exon-scaffold_269-1491911889:301549..301796 | Clytia hemisphaerica | exon |
| TCONS_00056205-exon-scaffold_269-1510915933:301549..301796 | TCONS_00056205-exon-scaffold_269-1510915933:301549..301796 | Clytia hemisphaerica | exon |
| TCONS_00056205-exon-scaffold_269-1575043694:301549..301796 | TCONS_00056205-exon-scaffold_269-1575043694:301549..301796 | Clytia hemisphaerica | exon |
| TCONS_00056205-exon-scaffold_269-1491911889:302193..302322 | TCONS_00056205-exon-scaffold_269-1491911889:302193..302322 | Clytia hemisphaerica | exon |
| TCONS_00056205-exon-scaffold_269-1510915933:302193..302322 | TCONS_00056205-exon-scaffold_269-1510915933:302193..302322 | Clytia hemisphaerica | exon |
| TCONS_00056205-exon-scaffold_269-1575043694:302193..302322 | TCONS_00056205-exon-scaffold_269-1575043694:302193..302322 | Clytia hemisphaerica | exon |
| TCONS_00056205-exon-scaffold_269-1491911889:302764..303049 | TCONS_00056205-exon-scaffold_269-1491911889:302764..303049 | Clytia hemisphaerica | exon |
| TCONS_00056205-exon-scaffold_269-1510915933:302764..303049 | TCONS_00056205-exon-scaffold_269-1510915933:302764..303049 | Clytia hemisphaerica | exon |
| TCONS_00056205-exon-scaffold_269-1575043694:302764..303049 | TCONS_00056205-exon-scaffold_269-1575043694:302764..303049 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_269 | supercontig | scaffold_269:301549..303049 + |
Blast
The following BLAST results are available for this feature:
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