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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056244 ID=TCONS_00056244|Name=TCONS_00056244|organism=Clytia hemisphaerica|type=transcript|length=1446bp
TTTAGATGACAAATACAATATACCTTAAACTTCAGTAACTGTATCGGTAC
TTTGCGCCTTACTTTGGCTTCAAATGTCATTTCGACCAAAACGAGAAAAT
TGGTCAAAGATACGGATGCACGATTGCAATGATTGATTGTGATGATGATG
TTCTCGTTTTATAACAGGCTACGCTCAGTACGCTTCAATGCCGTTAAAAA
CCCAATACTAATTTACGAATTTATTTTTCGACCAGCTATGTTAACTTATG
GTGTATGGGAACAAGTGCGTATGGACCATGGTCAAGAATTCTGTCTTGTC
AGTTTCGCTCAAACTATTATGTCACACCATAGGCTTGTTGGTACTTCTGA
ACCTTTTCGTATGACAACTTCGACGAAAAACAACGTTATTGAACGCTTTT
GGCCCGAGATGAATACGCGCGTGAACTACCATCTTAAACGTGCATTGAAC
ACTATCATAGCTAATGACATCACGGACATCTTGATGAAAGTGATCCCGTA
TTCAAGTTTTGTTTATCCTGGCTTACGTTGTATACTTCAAAAGACGCAGT
GGAACATTTGCTCAATTCATGGAACCATCATCGAGTACCAGGTTTTAATG
GTTGCATACCCGCAGAGAACATGCAGCAATCTATGCACATGGCACAAGTT
GTAGAATTTTTGGTTCCCTCGACCCCTGAGCTTGTTCGAATGTACCCGAA
GAAAGGGGAGGTCAGCTTACTCGTGATCCACAGTTTGGCATCGACCCGCT
TTGTGCTACAGGTACAGCAGACCTTTATCAGTCTCGTCATAGGATTTTTG
TGGCAAATACTCCTGcccctgaaataattttttcccaTCTTGTCCATGGT
GATTATGATAGCTTGGAACACGCTTTGCGATTATTCCACTACTTAACAAC
AATATTGTAANTTTATCCTGGCTTACGTTGTATATTTCAAAAGACGCAGT
GGAACATTTGCTCAATTCATGGAACCATCATCGAGTACCAGGTTTTAATG
GTGAACATGCAGCAATCTATGCACATGGCACAAGTTGTAGAATTTTTGGT
TTCCTCGACCCCTGAGCTTGTTCGAATGTACCCGAAAGAACCGGGGAGGT
CAGCTTACTCGTGATCCACAGTTTGGCATCGACCCGTTTTGTGCTACAGC
AGACCTTTATCAGTCTCGTCATAGGATTTTTGTGGCAAATACTCCTGccc
ctgaaataattttttcacaTCTTGTCCATGGTGATTATGATAGCTTGGAA
CACGCTACTTGCGATTATCCCACTACTTAACAACAATATTGTAATAGTGC
GTTTAAAATAGTAATAGTGTTTTTAAAAACGATATTTTTGAGTGTTTGTA
TACGTCAGTCTAGTCGGCTTCCGAaaatagaagttttttttgcatccaaa
aatttaattttttctgttttgacgTCAATATTGTGGCCAATTTTGG Run BLAST on NCBI protein sequence of TCONS_00056244-protein >TCONS_00056244-protein ID=TCONS_00056244-protein|Name=TCONS_00056244-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
MMMFSFYNRLRSVRFNAVKNPILIYEFIFRPAMLTYGVWEQVRMDHGQEF
CLVSFAQTIMSHHRLVGTSEPFRMTTSTKNNVIERFWPEMNTRVNYHLKR
ALNTIIANDITDILMKVIPYSSFVYPGLRCILQKTQWNICSIHGTIIEYQ
VLMVAYPQRTCSNLCTWHKL Run BLAST on NCBI transcript from alignment at scaffold_269:327561..329006 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056244 ID=TCONS_00056244|Name=TCONS_00056244|organism=Clytia hemisphaerica|type=transcript|length=1446bp|location=Sequence derived from alignment at scaffold_269:327561..329006 (Clytia hemisphaerica)
CCAAAATTGGCCACAATATTGAcgtcaaaacagaaaaaattaaatttttg
gatgcaaaaaaaacttctatttTCGGAAGCCGACTAGACTGACGTATACA
AACACTCAAAAATATCGTTTTTAAAAACACTATTACTATTTTAAACGCAC
TATTACAATATTGTTGTTAAGTAGTGGGATAATCGCAAGTAGCGTGTTCC
AAGCTATCATAATCACCATGGACAAGAtgtgaaaaaattatttcaggggC
AGGAGTATTTGCCACAAAAATCCTATGACGAGACTGATAAAGGTCTGCTG
TAGCACAAAACGGGTCGATGCCAAACTGTGGATCACGAGTAAGCTGACCT
CCCCGGTTCTTTCGGGTACATTCGAACAAGCTCAGGGGTCGAGGAAACCA
AAAATTCTACAACTTGTGCCATGTGCATAGATTGCTGCATGTTCACCATT
AAAACCTGGTACTCGATGATGGTTCCATGAATTGAGCAAATGTTCCACTG
CGTCTTTTGAAATATACAACGTAAGCCAGGATAAANTTACAATATTGTTG
TTAAGTAGTGGAATAATCGCAAAGCGTGTTCCAAGCTATCATAATCACCA
TGGACAAGAtgggaaaaaattatttcaggggCAGGAGTATTTGCCACAAA
AATCCTATGACGAGACTGATAAAGGTCTGCTGTACCTGTAGCACAAAGCG
GGTCGATGCCAAACTGTGGATCACGAGTAAGCTGACCTCCCCTTTCTTCG
GGTACATTCGAACAAGCTCAGGGGTCGAGGGAACCAAAAATTCTACAACT
TGTGCCATGTGCATAGATTGCTGCATGTTCTCTGCGGGTATGCAACCATT
AAAACCTGGTACTCGATGATGGTTCCATGAATTGAGCAAATGTTCCACTG
CGTCTTTTGAAGTATACAACGTAAGCCAGGATAAACAAAACTTGAATACG
GGATCACTTTCATCAAGATGTCCGTGATGTCATTAGCTATGATAGTGTTC
AATGCACGTTTAAGATGGTAGTTCACGCGCGTATTCATCTCGGGCCAAAA
GCGTTCAATAACGTTGTTTTTCGTCGAAGTTGTCATACGAAAAGGTTCAG
AAGTACCAACAAGCCTATGGTGTGACATAATAGTTTGAGCGAAACTGACA
AGACAGAATTCTTGACCATGGTCCATACGCACTTGTTCCCATACACCATA
AGTTAACATAGCTGGTCGAAAAATAAATTCGTAAATTAGTATTGGGTTTT
TAACGGCATTGAAGCGTACTGAGCGTAGCCTGTTATAAAACGAGAACATC
ATCATCACAATCAATCATTGCAATCGTGCATCCGTATCTTTGACCAATTT
TCTCGTTTTGGTCGAAATGACATTTGAAGCCAAAGTAAGGCGCAAAGTAC
CGATACAGTTACTGAAGTTTAAGGTATATTGTATTTGTCATCTAAA Coding sequence (CDS) from alignment at scaffold_269:327561..329006 >TCONS_00056244 ID=TCONS_00056244|Name=TCONS_00056244|organism=Clytia hemisphaerica|type=CDS|length=513bp|location=Sequence derived from alignment at scaffold_269:327561..329006 (Clytia hemisphaerica)
CTACAACTTGTGCCATGTGCATAGATTGCTGCATGTTCTCTGCGGGTATG
CAACCATTAAAACCTGGTACTCGATGATGGTTCCATGAATTGAGCAAATG
TTCCACTGCGTCTTTTGAAGTATACAACGTAAGCCAGGATAAACAAAACT
TGAATACGGGATCACTTTCATCAAGATGTCCGTGATGTCATTAGCTATGA
TAGTGTTCAATGCACGTTTAAGATGGTAGTTCACGCGCGTATTCATCTCG
GGCCAAAAGCGTTCAATAACGTTGTTTTTCGTCGAAGTTGTCATACGAAA
AGGTTCAGAAGTACCAACAAGCCTATGGTGTGACATAATAGTTTGAGCGA
AACTGACAAGACAGAATTCTTGACCATGGTCCATACGCACTTGTTCCCAT
ACACCATAAGTTAACATAGCTGGTCGAAAAATAAATTCGTAAATTAGTAT
TGGGTTTTTAACGGCATTGAAGCGTACTGAGCGTAGCCTGTTATAAAACG
AGAACATCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056244-exon-scaffold_269-1491911889:327561..329006 | TCONS_00056244-exon-scaffold_269-1491911889:327561..329006 | Clytia hemisphaerica | exon |
| TCONS_00056244-exon-scaffold_269-1510915933:327561..329006 | TCONS_00056244-exon-scaffold_269-1510915933:327561..329006 | Clytia hemisphaerica | exon |
| TCONS_00056244-exon-scaffold_269-1575043694:327561..329006 | TCONS_00056244-exon-scaffold_269-1575043694:327561..329006 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_269 | supercontig | scaffold_269:327561..329006 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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