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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056263 ID=TCONS_00056263|Name=TCONS_00056263|organism=Clytia hemisphaerica|type=transcript|length=2580bp
CCAGTATTGAAGTGTGACTGTCGATTCCATTTTGATATCTGTTCTTCTCC
CGGGAATATTCTCGCGGTATGTCCAATTCTTTGGCAGCGATAACATATAG
GTTGTCCATCGGTTGTTCTGTGCTCAGTGAATGTTTCCAAAACTTTCCTC
ATATCTCCCACGTATTGATCTTTTTCGTCGACGACGGAGTCTCTCACTCG
GGCGAATCGGACTGCTTCATTGTATGTTATCGGTTGGTGCAGTTGTACAT
GGCTTTTGAGACCTCCTTGCAATCCATTCACAAAAACATCTCTCTTGGCT
CCCTCATTGATCTCCAGTTCGGCTGACAACGATCCAATCTTCTCTATTCA
ATCTTCAAGTGACAAAGATTCTTGTTTCAGAGAGTAGAATTTGTTTCTTT
TGAACCAAGATTCCTCGGGTGGTTGAAATTTTTGAATGATGTTTGAATGA
TCTTAAGATTGTCTTTAAACCCTTTCGGTAATGAGTCGTAGAATCTTGAT
GCACGGTCCTTGAAAGCCAACGGGAGAGCTTCTAGTGTTCTTTTATCTTC
CCATTGATTGTAAGTTTTAACTTATTTTGCACATGTTTGAAAAAGTTTAC
AACATCTTCGCTCTCTTTGCCAAAGAACTTTGGGAGCTTTTCATCTCGTC
CTTTATTGGTTGACAGCTTTTTGAGAAACTGGAAAAACTTTTCATCTTCC
TCTTCTTTGATTTGCTCCTCTGGTTATCTTGATGATGGGTACAAAAGTGT
TAGTTCATCTCTTATCCGGGGTTGAAACCAAGCTTTCCTCTGGCAATCTT
CGTCTTTTGGTCGGTCGTAGGTGAAGGTGGAATCTCGACAGTTCTGCATT
CCACCTAAAAAAAGTAAGAAAGAAACCGAGAAAAATCTGTTCTGCATTGA
TTTATTTTTAACATGTCGAAAAACTTTTGTTATTATTTTCAAAGAGAGAA
GCATAGCGAAACCGAGCCTCCATCTGAATTTACTTAGATTTCATGATCAG
ATAGGAGTTTCTCAGATGAAAGAGGAGTGCAGAATGAACTTGAGACAAGT
AAAGTTCCCTGAGAAAAGTTTCTCTTACAAACACCATAATGAATCTTCCA
GTGGCATCAATTTCAAAAAACAATTGAGCCGTTATTTAGGTACCAAAAAG
CCTGTATATGCTTGAACAATACCGTAGTTATTTTAAGCTTAGATTTCTGT
AATGTAAAGCCCAGAGGGCGAGTTATCTATACTTATACACGCAAAAGCTT
TGAAGATCGGGGTGACTTTCAGCATccggaaggtttacattacggaattt
tgggagaccgcgtcaagaattttgcattGGTAGGTCGGCTAAACCTGCCC
ACTCCTTTGGGGCTTTAGCgtggaatatcagataaaaagGCTAGTGGTCA
AGCTAAAGAAAGTGTATATGAATGGTGGAGGATATAACGATTTTCAGTGA
TTTttcccccggacaagcatcagttgaccccccggacatcaaaaattacc
cctggacgaAGTAAAATTACCCCCGGACGAAGTAGAATTACCCCCAGACG
AAGTAAAATTACCCCCcgaacaaggcaaattttgacgaatttttactaac
cccggacaatatatcctccatcccGGGTGTACAagcattttctggaagag
cccatttcagCCAAAGCATAACATAAGCCCTGGGGATTTACAAATTTTAA
GCGCACTCttacattatatttttttattttcagtatCCCGTAATCTTGTA
ACCAGCAACTCCCCAAATCGCGACTACAATGCTTCCCTAACTCTTCAAAA
TATACAATCCGGGAATTTCATGCAGCGCTAGAGATTTATCCATCATTTAT
CCATACCTTTCATTGAAACAATTATAATTTGAGTGCGTTTTTAGCAAACT
CCAAAGACTTACAAAGATTTAAGGGttagatttaagattttggCGTAGAG
TTCCAGTCTCCAGATACCCCctaaaaagaggtcttcaaaagagctcataa
aaaaagagctcataaaaatagaggtcttcaaaagaggtcttcaaaagagc
tcataaaaaaagaggtcataaaaaaggaggtcttcaaaagaggtcttcaa
aagagctcataaaaaaagagctcataaaaaaatagCTCATAAAAAAGACG
TCTTATGGCAGCTATGGCGTTCCATAATCATGCCTTATTTTTTGGTTATG
atatcaatttttataaaatgcaCCATTCCGTTTAGACCCTGTTTTTTTTN
CAGCTATGGCGTTCCATAATCATGCCTTATTTTTTGGTTATGatatcaat
ttttataaaatgcaCCATTCCGTTTAGACcctgtttttttttcgacaTGT
GTCCCCACATCGTTTTTTTTAACAATGCACCCCATGTCCCCCCACGTACT
GATGACTTTTTGTCAAGAAGTAATCACGTTCACACGATTATATTGATTAA
ATAATTTCTAATTTCTANCTTTTTGTCAAGAAGTAATCACGTTCACACGA
TTATATTGATTAAATAATTtctaatttctattttttttatgcGAAAGCAA
ATAATTAATTGAGAATGAGGAAGATATTAT Run BLAST on NCBI transcript from alignment at scaffold_27:18464..21043 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056263 ID=TCONS_00056263|Name=TCONS_00056263|organism=Clytia hemisphaerica|type=transcript|length=2580bp|location=Sequence derived from alignment at scaffold_27:18464..21043 (Clytia hemisphaerica)
ATAATATCTTCCTCATTCTCAATTAATTATTTGCTTTCgcataaaaaaaa
tagaaattagaAATTATTTAATCAATATAATCGTGTGAACGTGATTACTT
CTTGACAAAAAGNTAGAAATTAGAAATTATTTAATCAATATAATCGTGTG
AACGTGATTACTTCTTGACAAAAAGTCATCAGTACGTGGGGGGACATGGG
GTGCATTGTTAAAAAAAACGATGTGGGGACACAtgtcgaaaaaaaaacag
gGTCTAAACGGAATGGtgcattttataaaaattgatatCATAACCAAAAA
ATAAGGCATGATTATGGAACGCCATAGCTGNAAAAAAAACAGGGTCTAAA
CGGAATGGtgcattttataaaaattgatatCATAACCAAAAAATAAGGCA
TGATTATGGAACGCCATAGCTGCCATAAGACGTCTTTTTTATGAGctatt
tttttatgagctctttttttatgagctcttttgaagacctcttttgaaga
cctccttttttatgacctctttttttatgagctcttttgaagacctcttt
tgaagacctctatttttatgagctctttttttatgagctcttttgaagac
ctctttttagGGGGTATCTGGAGACTGGAACTCTACGccaaaatcttaaa
tctaaCCCTTAAATCTTTGTAAGTCTTTGGAGTTTGCTAAAAACGCACTC
AAATTATAATTGTTTCAATGAAAGGTATGGATAAATGATGGATAAATCTC
TAGCGCTGCATGAAATTCCCGGATTGTATATTTTGAAGAGTTAGGGAAGC
ATTGTAGTCGCGATTTGGGGAGTTGCTGGTTACAAGATTACGGGatactg
aaaataaaaaaatataatgtaaGAGTGCGCTTAAAATTTGTAAATCCCCA
GGGCTTATGTTATGCTTTGGctgaaatgggctcttccagaaaatgctTGT
ACACCCgggatggaggatatattgtccggggttagtaaaaattcgtcaaa
atttgccttgttcgGGGGGTAATTTTACTTCGTCTGGGGGTAATTCTACT
TCGTCCGGGGGTAATTTTACTtcgtccaggggtaatttttgatgtccggg
gggtcaactgatgcttgtccgggggaaAAATCACTGAAAATCGTTATATC
CTCCACCATTCATATACACTTTCTTTAGCTTGACCACTAGCctttttatc
tgatattccacGCTAAAGCCCCAAAGGAGTGGGCAGGTTTAGCCGACCTA
CCaatgcaaaattcttgacgcggtctcccaaaattccgtaatgtaaacct
tccggATGCTGAAAGTCACCCCGATCTTCAAAGCTTTTGCGTGTATAAGT
ATAGATAACTCGCCCTCTGGGCTTTACATTACAGAAATCTAAGCTTAAAA
TAACTACGGTATTGTTCAAGCATATACAGGCTTTTTGGTACCTAAATAAC
GGCTCAATTGTTTTTTGAAATTGATGCCACTGGAAGATTCATTATGGTGT
TTGTAAGAGAAACTTTTCTCAGGGAACTTTACTTGTCTCAAGTTCATTCT
GCACTCCTCTTTCATCTGAGAAACTCCTATCTGATCATGAAATCTAAGTA
AATTCAGATGGAGGCTCGGTTTCGCTATGCTTCTCTCTTTGAAAATAATA
ACAAAAGTTTTTCGACATGTTAAAAATAAATCAATGCAGAACAGATTTTT
CTCGGTTTCTTTCTTACTTTTTTTAGGTGGAATGCAGAACTGTCGAGATT
CCACCTTCACCTACGACCGACCAAAAGACGAAGATTGCCAGAGGAAAGCT
TGGTTTCAACCCCGGATAAGAGATGAACTAACACTTTTGTACCCATCATC
AAGATAACCAGAGGAGCAAATCAAAGAAGAGGAAGATGAAAAGTTTTTCC
AGTTTCTCAAAAAGCTGTCAACCAATAAAGGACGAGATGAAAAGCTCCCA
AAGTTCTTTGGCAAAGAGAGCGAAGATGTTGTAAACTTTTTCAAACATGT
GCAAAATAAGTTAAAACTTACAATCAATGGGAAGATAAAAGAACACTAGA
AGCTCTCCCGTTGGCTTTCAAGGACCGTGCATCAAGATTCTACGACTCAT
TACCGAAAGGGTTTAAAGACAATCTTAAGATCATTCAAACATCATTCAAA
AATTTCAACCACCCGAGGAATCTTGGTTCAAAAGAAACAAATTCTACTCT
CTGAAACAAGAATCTTTGTCACTTGAAGATTGAATAGAGAAGATTGGATC
GTTGTCAGCCGAACTGGAGATCAATGAGGGAGCCAAGAGAGATGTTTTTG
TGAATGGATTGCAAGGAGGTCTCAAAAGCCATGTACAACTGCACCAACCG
ATAACATACAATGAAGCAGTCCGATTCGCCCGAGTGAGAGACTCCGTCGT
CGACGAAAAAGATCAATACGTGGGAGATATGAGGAAAGTTTTGGAAACAT
TCACTGAGCACAGAACAACCGATGGACAACCTATATGTTATCGCTGCCAA
AGAATTGGACATACCGCGAGAATATTCCCGGGAGAAGAACAGATATCAAA
ATGGAATCGACAGTCACACTTCAATACTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056263-exon-scaffold_27-1491911889:18464..21043 | TCONS_00056263-exon-scaffold_27-1491911889:18464..21043 | Clytia hemisphaerica | exon |
| TCONS_00056263-exon-scaffold_27-1510915933:18464..21043 | TCONS_00056263-exon-scaffold_27-1510915933:18464..21043 | Clytia hemisphaerica | exon |
| TCONS_00056263-exon-scaffold_27-1575043694:18464..21043 | TCONS_00056263-exon-scaffold_27-1575043694:18464..21043 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_27 | supercontig | scaffold_27:18464..21043 . |
Blast
The following BLAST results are available for this feature:
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