TCONS_00056267 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056267
Unique NameTCONS_00056267
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3021

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056267 ID=TCONS_00056267|Name=TCONS_00056267|organism=Clytia hemisphaerica|type=transcript|length=3021bp
GCTCGTTAACAGATACGTCATTGAGAAAACTACTTCTGGTGGAGAAAACT
AATTTACTTATAATTGATTGAAacgaaacaaaattttttaaatagaaaCT
AATTAACCGCCAAGATTCAAGCGAATAACAGCCTTAAGTGCAGTTGTAGG
ACCGCTACGCGCAACTGTCCGGCCCCTGGGCGCTGTCTTGTTCATTCATT
TGAGACCcaggaaaattttaataaagtCGCCAAAACTAGACATTCATCTT
CCGTACTAATGTCGTTGGAGGAAGAGCCTGCATCCGACGAGATGCTTCGT
CGAATCACGATGCAGCTGGTAGACAATAGTTCTCGCCAAGACAGGGCCTT
ACAAGATTTGATGAAAACTATTGCGGGTGTCGTATTAGGTTAGGTTTTGA
CCTCATCAacaatatttttagcttttccTCCTCCACAACAGGAAATTAAA
TTCACTTTGACGAGATTCTACGCGATTTCCAAATTTTCCTAGACTCGAAG
TCAATATCAAGTATTTTTATGTAGATAGCATCAAAATCTCTCTTCTAATT
GACATGAAGTTTTGATTaacgaaatttcgaaaaattttctaatttgctaa
ctaattaattttgaaataactGATGACGAAGGCAGGATATATGTGAGAGA
TATAATCCTAACTAATTAACCTTGAAATAACCAGTGACGTAGATAGAACG
TATATGTGAGAGATATCTTCTGAGAGATACTACTATAATTATCGTACGAT
CGATTGCTCAAGCACTGAGGGGAGTCCTTGAGTAATTTAAAAGAATTGTa
atgaaatttataaatattgGATACCTAGGGACGGGTCTACCCCTAGAACC
CCAGGGAGGAGTGATGCCCCTGGAAGCCCTTTCACCCCTCACTTAAAGGA
AAGGATGGTCCCATTACGGCCCAGAACTCACATTCTGAGGTTAGGATGGA
AGCCCTCGACGGTTGGAGTTGTGGTCCTCCATACCTTGTTAAAAATATAG
GTACCCAATGTGTCTTTAGCATAGAGGATGTATTTTGAGGAAAGACATGC
AGACAATAAAAGAGAAACGCTATAGCAGATAAATTAAAcggttttattta
ttttagattcaCGGATATCACACACTAATGTCAAGTTACGAAGAACTGGA
AGTGGCTCAAAGGAATGCGTTGAGCGCAATCCAGACACACTTAGGACAAG
GATTGGATCCATTAACCGAAGAATATCGTGGAATAAATAACCGACCACAC
TTAAAAGAAGAATCCAATCCCAAGAACGCAGAACACTCTGCTATCATAAA
ACTAGTACAAACTCTAGAAGTGGATATAGAAACATTGTCCATTGAGAAGA
GACAGTACGTCAATACCCTGAAAGACGTTAACGAACAGCTTGAACAATAC
GTCAGGCGTGGTAGGGATACACAAGAAGAGACAGACGAAATCCCTACGCT
CCAAGCAATAGAGTCCCTTAAAAGAAGGGGAATTGAACAAGGTAAAGCAA
TATCTGAGGAGTCCAAAAGAATATATATTGGGCTAAAAGAAGTAGAAGAG
GAGCTCTCGTCAGGAGACTACTTACATTCCATAGAGTTGAGAggagaaat
tgaaaaacttcTAGAAACTCTCCAGAAATCTGAATGCATCCTTGGCCAGT
TTGTATATAAGATTTCTAAAACCCGAGACAACCTCGAAGAAAGGATCTTA
TTAGAATCCTCAGACCCAGTCACACACATGGGAGgactgtttttttctaa
aacgcCTCTTCCAGTTGATTGTTCTACCCCACTATTCCGTAGAACACGGT
TAGAATCAAAAGGGAAAGAAGATCAAAAAGCCCAAGTTGAGGAACCGAAG
AGAATGGATTCAGTCCTAGATTCGGTTTCTGTTGCTGCCTTGTTGGCAAA
CAAGGTAGACATCTCATCACTCCCCAAATTTGGAGAGAATCCGAGTGATG
ATGTAGTCGAATTCATTACCAAACTTGATATATCGTTGTCATTTTATCAA
TTAGACGACAAACAAAAAGCAAGGGTCGTTCCTTTACTTCTAATGAAAAG
GGCGTACACCTTTTATTTTACTCTACCGTCCATAGTGAAGGACAATTACA
AAGAGCTAACAAAATCCCTTCGTAAAGAGTTTGATGCTCCTGAACTGAAG
TACAGGAAAAGACAGGAACTCCACGGGATCAAACAAAACGGGGATACCAT
AACGAGGTACCTGGAGAGAGTAGAGAGGCTCTCACAAAATTTACAGGTCG
CCGACCAAACGAAACTGGATATAATGATTGCAGGTTTGGACATCCCATAT
AGGAACTATATCCAAATGAAACAGCCAAGAACATACAGTGATGCCACACA
CGCATTACTATTAAAAGAGTCAGTTAATCCACCAATAGACGATACAGCCA
CGATGAACAGCATCCTCGCAGCAGTGGAAGCCATGAGGCCTAGTGCAAAC
AATAGGAACAGTGAAAGACCACCGATGGTATGTTACTATTGCAACCGACG
AGGAAATATGATGAGAGAATGTCAATTGAGGAAGAGGGACCAAAGCAGAA
ACAATAGGCCTCCAACGAAAGGCCCAAGTCAAGAAAAGTGTACACAGTGC
TATCGCTGGGGACACATTGCTAAAGAGTGTAGAAATCGAAAAAAGGTAGT
GGATTAGGCCACGCCCAGATGAGTGAGGAAGAGACCATTTTTCTAAAAGT
CGACAAAGTTTCTTGCAATGAAAAATCACGGAAACTACGGTCAGTCTTCT
GGGTAACGCTATATCAGAAACCAATACAAACTCTGGTAGACACTGGTGCA
ACAGTCACAGCGATTTtggctggaacactagaacaaaTCAGTAGAAACAC
CAGACGTCCCGCCTACCCGTGTTGAAGTAGCTAATGGTTATATGGAAGAG
GCAATAGAGGTCTTGAACCTTCCCATTACTATTGGTGGCTCAACATTCTT
TCATCCGACACACGTATTCGAGAATCTTCCATTTCCACTCTTATTGGGTG
ATGACCTCCTCGAGGTTAAAG
Run BLAST on NCBI

protein sequence of TCONS_00056267-protein

>TCONS_00056267-protein ID=TCONS_00056267-protein|Name=TCONS_00056267-protein|organism=Clytia hemisphaerica|type=polypeptide|length=509bp
MSSYEELEVAQRNALSAIQTHLGQGLDPLTEEYRGINNRPHLKEESNPKN
AEHSAIIKLVQTLEVDIETLSIEKRQYVNTLKDVNEQLEQYVRRGRDTQE
ETDEIPTLQAIESLKRRGIEQGKAISEESKRIYIGLKEVEEELSSGDYLH
SIELRGEIEKLLETLQKSECILGQFVYKISKTRDNLEERILLESSDPVTH
MGGLFFSKTPLPVDCSTPLFRRTRLESKGKEDQKAQVEEPKRMDSVLDSV
SVAALLANKVDISSLPKFGENPSDDVVEFITKLDISLSFYQLDDKQKARV
VPLLLMKRAYTFYFTLPSIVKDNYKELTKSLRKEFDAPELKYRKRQELHG
IKQNGDTITRYLERVERLSQNLQVADQTKLDIMIAGLDIPYRNYIQMKQP
RTYSDATHALLLKESVNPPIDDTATMNSILAAVEAMRPSANNRNSERPPM
VCYYCNRRGNMMRECQLRKRDQSRNNRPPTKGPSQEKCTQCYRWGHIAKE
CRNRKKVVD
Run BLAST on NCBI

transcript from alignment at scaffold_27:41369..44389

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056267 ID=TCONS_00056267|Name=TCONS_00056267|organism=Clytia hemisphaerica|type=transcript|length=3021bp|location=Sequence derived from alignment at scaffold_27:41369..44389 (Clytia hemisphaerica)
CTTTAACCTCGAGGAGGTCATCACCCAATAAGAGTGGAAATGGAAGATTC TCGAATACGTGTGTCGGATGAAAGAATGTTGAGCCACCAATAGTAATGGG AAGGTTCAAGACCTCTATTGCCTCTTCCATATAACCATTAGCTACTTCAA CACGGGTAGGCGGGACGTCTGGTGTTTCTACTGAtttgttctagtgttcc agccaAAATCGCTGTGACTGTTGCACCAGTGTCTACCAGAGTTTGTATTG GTTTCTGATATAGCGTTACCCAGAAGACTGACCGTAGTTTCCGTGATTTT TCATTGCAAGAAACTTTGTCGACTTTTAGAAAAATGGTCTCTTCCTCACT CATCTGGGCGTGGCCTAATCCACTACCTTTTTTCGATTTCTACACTCTTT AGCAATGTGTCCCCAGCGATAGCACTGTGTACACTTTTCTTGACTTGGGC CTTTCGTTGGAGGCCTATTGTTTCTGCTTTGGTCCCTCTTCCTCAATTGA CATTCTCTCATCATATTTCCTCGTCGGTTGCAATAGTAACATACCATCGG TGGTCTTTCACTGTTCCTATTGTTTGCACTAGGCCTCATGGCTTCCACTG CTGCGAGGATGCTGTTCATCGTGGCTGTATCGTCTATTGGTGGATTAACT GACTCTTTTAATAGTAATGCGTGTGTGGCATCACTGTATGTTCTTGGCTG TTTCATTTGGATATAGTTCCTATATGGGATGTCCAAACCTGCAATCATTA TATCCAGTTTCGTTTGGTCGGCGACCTGTAAATTTTGTGAGAGCCTCTCT ACTCTCTCCAGGTACCTCGTTATGGTATCCCCGTTTTGTTTGATCCCGTG GAGTTCCTGTCTTTTCCTGTACTTCAGTTCAGGAGCATCAAACTCTTTAC GAAGGGATTTTGTTAGCTCTTTGTAATTGTCCTTCACTATGGACGGTAGA GTAAAATAAAAGGTGTACGCCCTTTTCATTAGAAGTAAAGGAACGACCCT TGCTTTTTGTTTGTCGTCTAATTGATAAAATGACAACGATATATCAAGTT TGGTAATGAATTCGACTACATCATCACTCGGATTCTCTCCAAATTTGGGG AGTGATGAGATGTCTACCTTGTTTGCCAACAAGGCAGCAACAGAAACCGA ATCTAGGACTGAATCCATTCTCTTCGGTTCCTCAACTTGGGCTTTTTGAT CTTCTTTCCCTTTTGATTCTAACCGTGTTCTACGGAATAGTGGGGTAGAA CAATCAACTGGAAGAGgcgttttagaaaaaaacagtcCTCCCATGTGTGT GACTGGGTCTGAGGATTCTAATAAGATCCTTTCTTCGAGGTTGTCTCGGG TTTTAGAAATCTTATATACAAACTGGCCAAGGATGCATTCAGATTTCTGG AGAGTTTCTAgaagtttttcaatttctccTCTCAACTCTATGGAATGTAA GTAGTCTCCTGACGAGAGCTCCTCTTCTACTTCTTTTAGCCCAATATATA TTCTTTTGGACTCCTCAGATATTGCTTTACCTTGTTCAATTCCCCTTCTT TTAAGGGACTCTATTGCTTGGAGCGTAGGGATTTCGTCTGTCTCTTCTTG TGTATCCCTACCACGCCTGACGTATTGTTCAAGCTGTTCGTTAACGTCTT TCAGGGTATTGACGTACTGTCTCTTCTCAATGGACAATGTTTCTATATCC ACTTCTAGAGTTTGTACTAGTTTTATGATAGCAGAGTGTTCTGCGTTCTT GGGATTGGATTCTTCTTTTAAGTGTGGTCGGTTATTTATTCCACGATATT CTTCGGTTAATGGATCCAATCCTTGTCCTAAGTGTGTCTGGATTGCGCTC AACGCATTCCTTTGAGCCACTTCCAGTTCTTCGTAACTTGACATTAGTGT GTGATATCCGtgaatctaaaataaataaaaccgTTTAATTTATCTGCTAT AGCGTTTCTCTTTTATTGTCTGCATGTCTTTCCTCAAAATACATCCTCTA TGCTAAAGACACATTGGGTACCTATATTTTTAACAAGGTATGGAGGACCA CAACTCCAACCGTCGAGGGCTTCCATCCTAACCTCAGAATGTGAGTTCTG GGCCGTAATGGGACCATCCTTTCCTTTAAGTGAGGGGTGAAAGGGCTTCC AGGGGCATCACTCCTCCCTGGGGTTCTAGGGGTAGACCCGTCCCTAGGTA TCcaatatttataaatttcattACAATTCTTTTAAATTACTCAAGGACTC CCCTCAGTGCTTGAGCAATCGATCGTACGATAATTATAGTAGTATCTCTC AGAAGATATCTCTCACATATACGTTCTATCTACGTCACTGGTTATTTCAA GGTTAATTAGTTAGGATTATATCTCTCACATATATCCTGCCTTCGTCATC agttatttcaaaattaattagttagcaaattagaaaatttttcgaaattt cgttAATCAAAACTTCATGTCAATTAGAAGAGAGATTTTGATGCTATCTA CATAAAAATACTTGATATTGACTTCGAGTCTAGGAAAATTTGGAAATCGC GTAGAATCTCGTCAAAGTGAATTTAATTTCCTGTTGTGGAGGAggaaaag ctaaaaatattgtTGATGAGGTCAAAACCTAACCTAATACGACACCCGCA ATAGTTTTCATCAAATCTTGTAAGGCCCTGTCTTGGCGAGAACTATTGTC TACCAGCTGCATCGTGATTCGACGAAGCATCTCGTCGGATGCAGGCTCTT CCTCCAACGACATTAGTACGGAAGATGAATGTCTAGTTTTGGCGacttta ttaaaattttcctgGGTCTCAAATGAATGAACAAGACAGCGCCCAGGGGC CGGACAGTTGCGCGTAGCGGTCCTACAACTGCACTTAAGGCTGTTATTCG CTTGAATCTTGGCGGTTAATTAGtttctatttaaaaaattttgtttcgtT TCAATCAATTATAAGTAAATTAGTTTTCTCCACCAGAAGTAGTTTTCTCA ATGACGTATCTGTTAACGAGC

Coding sequence (CDS) from alignment at scaffold_27:41369..44389

>TCONS_00056267 ID=TCONS_00056267|Name=TCONS_00056267|organism=Clytia hemisphaerica|type=CDS|length=1530bp|location=Sequence derived from alignment at scaffold_27:41369..44389 (Clytia hemisphaerica)
CTAATCCACTACCTTTTTTCGATTTCTACACTCTTTAGCAATGTGTCCCC
AGCGATAGCACTGTGTACACTTTTCTTGACTTGGGCCTTTCGTTGGAGGC
CTATTGTTTCTGCTTTGGTCCCTCTTCCTCAATTGACATTCTCTCATCAT
ATTTCCTCGTCGGTTGCAATAGTAACATACCATCGGTGGTCTTTCACTGT
TCCTATTGTTTGCACTAGGCCTCATGGCTTCCACTGCTGCGAGGATGCTG
TTCATCGTGGCTGTATCGTCTATTGGTGGATTAACTGACTCTTTTAATAG
TAATGCGTGTGTGGCATCACTGTATGTTCTTGGCTGTTTCATTTGGATAT
AGTTCCTATATGGGATGTCCAAACCTGCAATCATTATATCCAGTTTCGTT
TGGTCGGCGACCTGTAAATTTTGTGAGAGCCTCTCTACTCTCTCCAGGTA
CCTCGTTATGGTATCCCCGTTTTGTTTGATCCCGTGGAGTTCCTGTCTTT
TCCTGTACTTCAGTTCAGGAGCATCAAACTCTTTACGAAGGGATTTTGTT
AGCTCTTTGTAATTGTCCTTCACTATGGACGGTAGAGTAAAATAAAAGGT
GTACGCCCTTTTCATTAGAAGTAAAGGAACGACCCTTGCTTTTTGTTTGT
CGTCTAATTGATAAAATGACAACGATATATCAAGTTTGGTAATGAATTCG
ACTACATCATCACTCGGATTCTCTCCAAATTTGGGGAGTGATGAGATGTC
TACCTTGTTTGCCAACAAGGCAGCAACAGAAACCGAATCTAGGACTGAAT
CCATTCTCTTCGGTTCCTCAACTTGGGCTTTTTGATCTTCTTTCCCTTTT
GATTCTAACCGTGTTCTACGGAATAGTGGGGTAGAACAATCAACTGGAAG
AGgcgttttagaaaaaaacagtcCTCCCATGTGTGTGACTGGGTCTGAGG
ATTCTAATAAGATCCTTTCTTCGAGGTTGTCTCGGGTTTTAGAAATCTTA
TATACAAACTGGCCAAGGATGCATTCAGATTTCTGGAGAGTTTCTAgaag
tttttcaatttctccTCTCAACTCTATGGAATGTAAGTAGTCTCCTGACG
AGAGCTCCTCTTCTACTTCTTTTAGCCCAATATATATTCTTTTGGACTCC
TCAGATATTGCTTTACCTTGTTCAATTCCCCTTCTTTTAAGGGACTCTAT
TGCTTGGAGCGTAGGGATTTCGTCTGTCTCTTCTTGTGTATCCCTACCAC
GCCTGACGTATTGTTCAAGCTGTTCGTTAACGTCTTTCAGGGTATTGACG
TACTGTCTCTTCTCAATGGACAATGTTTCTATATCCACTTCTAGAGTTTG
TACTAGTTTTATGATAGCAGAGTGTTCTGCGTTCTTGGGATTGGATTCTT
CTTTTAAGTGTGGTCGGTTATTTATTCCACGATATTCTTCGGTTAATGGA
TCCAATCCTTGTCCTAAGTGTGTCTGGATTGCGCTCAACGCATTCCTTTG
AGCCACTTCCAGTTCTTCGTAACTTGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035441XLOC_035441Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056267-proteinTCONS_00056267-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056267-exon-scaffold_27-1491911889:41369..44389TCONS_00056267-exon-scaffold_27-1491911889:41369..44389Clytia hemisphaericaexon
TCONS_00056267-exon-scaffold_27-1510915933:41369..44389TCONS_00056267-exon-scaffold_27-1510915933:41369..44389Clytia hemisphaericaexon
TCONS_00056267-exon-scaffold_27-1575043694:41369..44389TCONS_00056267-exon-scaffold_27-1575043694:41369..44389Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:41369..44389 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (0.514192 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0123031 0 0 0.175615 0.260526 0.113544 0.142308 0.0567625 0.188248 0.153387 0.163871 0.316528 0.0875372 0.514192 0.500108 0.162616 0.219638 0.115073 0.138466 0.0243968 0.0356997 0.0289318 0.0263032 0.0135458 0.0786138 0 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR005162Retrotrans_gag_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056267 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50010001500200025003000Sequence
Match NameE-valueIdentityDescription
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