Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056267 ID=TCONS_00056267|Name=TCONS_00056267|organism=Clytia hemisphaerica|type=transcript|length=3021bp GCTCGTTAACAGATACGTCATTGAGAAAACTACTTCTGGTGGAGAAAACT AATTTACTTATAATTGATTGAAacgaaacaaaattttttaaatagaaaCT AATTAACCGCCAAGATTCAAGCGAATAACAGCCTTAAGTGCAGTTGTAGG ACCGCTACGCGCAACTGTCCGGCCCCTGGGCGCTGTCTTGTTCATTCATT TGAGACCcaggaaaattttaataaagtCGCCAAAACTAGACATTCATCTT CCGTACTAATGTCGTTGGAGGAAGAGCCTGCATCCGACGAGATGCTTCGT CGAATCACGATGCAGCTGGTAGACAATAGTTCTCGCCAAGACAGGGCCTT ACAAGATTTGATGAAAACTATTGCGGGTGTCGTATTAGGTTAGGTTTTGA CCTCATCAacaatatttttagcttttccTCCTCCACAACAGGAAATTAAA TTCACTTTGACGAGATTCTACGCGATTTCCAAATTTTCCTAGACTCGAAG TCAATATCAAGTATTTTTATGTAGATAGCATCAAAATCTCTCTTCTAATT GACATGAAGTTTTGATTaacgaaatttcgaaaaattttctaatttgctaa ctaattaattttgaaataactGATGACGAAGGCAGGATATATGTGAGAGA TATAATCCTAACTAATTAACCTTGAAATAACCAGTGACGTAGATAGAACG TATATGTGAGAGATATCTTCTGAGAGATACTACTATAATTATCGTACGAT CGATTGCTCAAGCACTGAGGGGAGTCCTTGAGTAATTTAAAAGAATTGTa atgaaatttataaatattgGATACCTAGGGACGGGTCTACCCCTAGAACC CCAGGGAGGAGTGATGCCCCTGGAAGCCCTTTCACCCCTCACTTAAAGGA AAGGATGGTCCCATTACGGCCCAGAACTCACATTCTGAGGTTAGGATGGA AGCCCTCGACGGTTGGAGTTGTGGTCCTCCATACCTTGTTAAAAATATAG GTACCCAATGTGTCTTTAGCATAGAGGATGTATTTTGAGGAAAGACATGC AGACAATAAAAGAGAAACGCTATAGCAGATAAATTAAAcggttttattta ttttagattcaCGGATATCACACACTAATGTCAAGTTACGAAGAACTGGA AGTGGCTCAAAGGAATGCGTTGAGCGCAATCCAGACACACTTAGGACAAG GATTGGATCCATTAACCGAAGAATATCGTGGAATAAATAACCGACCACAC TTAAAAGAAGAATCCAATCCCAAGAACGCAGAACACTCTGCTATCATAAA ACTAGTACAAACTCTAGAAGTGGATATAGAAACATTGTCCATTGAGAAGA GACAGTACGTCAATACCCTGAAAGACGTTAACGAACAGCTTGAACAATAC GTCAGGCGTGGTAGGGATACACAAGAAGAGACAGACGAAATCCCTACGCT CCAAGCAATAGAGTCCCTTAAAAGAAGGGGAATTGAACAAGGTAAAGCAA TATCTGAGGAGTCCAAAAGAATATATATTGGGCTAAAAGAAGTAGAAGAG GAGCTCTCGTCAGGAGACTACTTACATTCCATAGAGTTGAGAggagaaat tgaaaaacttcTAGAAACTCTCCAGAAATCTGAATGCATCCTTGGCCAGT TTGTATATAAGATTTCTAAAACCCGAGACAACCTCGAAGAAAGGATCTTA TTAGAATCCTCAGACCCAGTCACACACATGGGAGgactgtttttttctaa aacgcCTCTTCCAGTTGATTGTTCTACCCCACTATTCCGTAGAACACGGT TAGAATCAAAAGGGAAAGAAGATCAAAAAGCCCAAGTTGAGGAACCGAAG AGAATGGATTCAGTCCTAGATTCGGTTTCTGTTGCTGCCTTGTTGGCAAA CAAGGTAGACATCTCATCACTCCCCAAATTTGGAGAGAATCCGAGTGATG ATGTAGTCGAATTCATTACCAAACTTGATATATCGTTGTCATTTTATCAA TTAGACGACAAACAAAAAGCAAGGGTCGTTCCTTTACTTCTAATGAAAAG GGCGTACACCTTTTATTTTACTCTACCGTCCATAGTGAAGGACAATTACA AAGAGCTAACAAAATCCCTTCGTAAAGAGTTTGATGCTCCTGAACTGAAG TACAGGAAAAGACAGGAACTCCACGGGATCAAACAAAACGGGGATACCAT AACGAGGTACCTGGAGAGAGTAGAGAGGCTCTCACAAAATTTACAGGTCG CCGACCAAACGAAACTGGATATAATGATTGCAGGTTTGGACATCCCATAT AGGAACTATATCCAAATGAAACAGCCAAGAACATACAGTGATGCCACACA CGCATTACTATTAAAAGAGTCAGTTAATCCACCAATAGACGATACAGCCA CGATGAACAGCATCCTCGCAGCAGTGGAAGCCATGAGGCCTAGTGCAAAC AATAGGAACAGTGAAAGACCACCGATGGTATGTTACTATTGCAACCGACG AGGAAATATGATGAGAGAATGTCAATTGAGGAAGAGGGACCAAAGCAGAA ACAATAGGCCTCCAACGAAAGGCCCAAGTCAAGAAAAGTGTACACAGTGC TATCGCTGGGGACACATTGCTAAAGAGTGTAGAAATCGAAAAAAGGTAGT GGATTAGGCCACGCCCAGATGAGTGAGGAAGAGACCATTTTTCTAAAAGT CGACAAAGTTTCTTGCAATGAAAAATCACGGAAACTACGGTCAGTCTTCT GGGTAACGCTATATCAGAAACCAATACAAACTCTGGTAGACACTGGTGCA ACAGTCACAGCGATTTtggctggaacactagaacaaaTCAGTAGAAACAC CAGACGTCCCGCCTACCCGTGTTGAAGTAGCTAATGGTTATATGGAAGAG GCAATAGAGGTCTTGAACCTTCCCATTACTATTGGTGGCTCAACATTCTT TCATCCGACACACGTATTCGAGAATCTTCCATTTCCACTCTTATTGGGTG ATGACCTCCTCGAGGTTAAAG Run BLAST on NCBI protein sequence of TCONS_00056267-protein >TCONS_00056267-protein ID=TCONS_00056267-protein|Name=TCONS_00056267-protein|organism=Clytia hemisphaerica|type=polypeptide|length=509bp
MSSYEELEVAQRNALSAIQTHLGQGLDPLTEEYRGINNRPHLKEESNPKN AEHSAIIKLVQTLEVDIETLSIEKRQYVNTLKDVNEQLEQYVRRGRDTQE ETDEIPTLQAIESLKRRGIEQGKAISEESKRIYIGLKEVEEELSSGDYLH SIELRGEIEKLLETLQKSECILGQFVYKISKTRDNLEERILLESSDPVTH MGGLFFSKTPLPVDCSTPLFRRTRLESKGKEDQKAQVEEPKRMDSVLDSV SVAALLANKVDISSLPKFGENPSDDVVEFITKLDISLSFYQLDDKQKARV VPLLLMKRAYTFYFTLPSIVKDNYKELTKSLRKEFDAPELKYRKRQELHG IKQNGDTITRYLERVERLSQNLQVADQTKLDIMIAGLDIPYRNYIQMKQP RTYSDATHALLLKESVNPPIDDTATMNSILAAVEAMRPSANNRNSERPPM VCYYCNRRGNMMRECQLRKRDQSRNNRPPTKGPSQEKCTQCYRWGHIAKE CRNRKKVVD Run BLAST on NCBI transcript from alignment at scaffold_27:41369..44389 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056267 ID=TCONS_00056267|Name=TCONS_00056267|organism=Clytia hemisphaerica|type=transcript|length=3021bp|location=Sequence derived from alignment at scaffold_27:41369..44389 (Clytia hemisphaerica) CTTTAACCTCGAGGAGGTCATCACCCAATAAGAGTGGAAATGGAAGATTC
TCGAATACGTGTGTCGGATGAAAGAATGTTGAGCCACCAATAGTAATGGG
AAGGTTCAAGACCTCTATTGCCTCTTCCATATAACCATTAGCTACTTCAA
CACGGGTAGGCGGGACGTCTGGTGTTTCTACTGAtttgttctagtgttcc
agccaAAATCGCTGTGACTGTTGCACCAGTGTCTACCAGAGTTTGTATTG
GTTTCTGATATAGCGTTACCCAGAAGACTGACCGTAGTTTCCGTGATTTT
TCATTGCAAGAAACTTTGTCGACTTTTAGAAAAATGGTCTCTTCCTCACT
CATCTGGGCGTGGCCTAATCCACTACCTTTTTTCGATTTCTACACTCTTT
AGCAATGTGTCCCCAGCGATAGCACTGTGTACACTTTTCTTGACTTGGGC
CTTTCGTTGGAGGCCTATTGTTTCTGCTTTGGTCCCTCTTCCTCAATTGA
CATTCTCTCATCATATTTCCTCGTCGGTTGCAATAGTAACATACCATCGG
TGGTCTTTCACTGTTCCTATTGTTTGCACTAGGCCTCATGGCTTCCACTG
CTGCGAGGATGCTGTTCATCGTGGCTGTATCGTCTATTGGTGGATTAACT
GACTCTTTTAATAGTAATGCGTGTGTGGCATCACTGTATGTTCTTGGCTG
TTTCATTTGGATATAGTTCCTATATGGGATGTCCAAACCTGCAATCATTA
TATCCAGTTTCGTTTGGTCGGCGACCTGTAAATTTTGTGAGAGCCTCTCT
ACTCTCTCCAGGTACCTCGTTATGGTATCCCCGTTTTGTTTGATCCCGTG
GAGTTCCTGTCTTTTCCTGTACTTCAGTTCAGGAGCATCAAACTCTTTAC
GAAGGGATTTTGTTAGCTCTTTGTAATTGTCCTTCACTATGGACGGTAGA
GTAAAATAAAAGGTGTACGCCCTTTTCATTAGAAGTAAAGGAACGACCCT
TGCTTTTTGTTTGTCGTCTAATTGATAAAATGACAACGATATATCAAGTT
TGGTAATGAATTCGACTACATCATCACTCGGATTCTCTCCAAATTTGGGG
AGTGATGAGATGTCTACCTTGTTTGCCAACAAGGCAGCAACAGAAACCGA
ATCTAGGACTGAATCCATTCTCTTCGGTTCCTCAACTTGGGCTTTTTGAT
CTTCTTTCCCTTTTGATTCTAACCGTGTTCTACGGAATAGTGGGGTAGAA
CAATCAACTGGAAGAGgcgttttagaaaaaaacagtcCTCCCATGTGTGT
GACTGGGTCTGAGGATTCTAATAAGATCCTTTCTTCGAGGTTGTCTCGGG
TTTTAGAAATCTTATATACAAACTGGCCAAGGATGCATTCAGATTTCTGG
AGAGTTTCTAgaagtttttcaatttctccTCTCAACTCTATGGAATGTAA
GTAGTCTCCTGACGAGAGCTCCTCTTCTACTTCTTTTAGCCCAATATATA
TTCTTTTGGACTCCTCAGATATTGCTTTACCTTGTTCAATTCCCCTTCTT
TTAAGGGACTCTATTGCTTGGAGCGTAGGGATTTCGTCTGTCTCTTCTTG
TGTATCCCTACCACGCCTGACGTATTGTTCAAGCTGTTCGTTAACGTCTT
TCAGGGTATTGACGTACTGTCTCTTCTCAATGGACAATGTTTCTATATCC
ACTTCTAGAGTTTGTACTAGTTTTATGATAGCAGAGTGTTCTGCGTTCTT
GGGATTGGATTCTTCTTTTAAGTGTGGTCGGTTATTTATTCCACGATATT
CTTCGGTTAATGGATCCAATCCTTGTCCTAAGTGTGTCTGGATTGCGCTC
AACGCATTCCTTTGAGCCACTTCCAGTTCTTCGTAACTTGACATTAGTGT
GTGATATCCGtgaatctaaaataaataaaaccgTTTAATTTATCTGCTAT
AGCGTTTCTCTTTTATTGTCTGCATGTCTTTCCTCAAAATACATCCTCTA
TGCTAAAGACACATTGGGTACCTATATTTTTAACAAGGTATGGAGGACCA
CAACTCCAACCGTCGAGGGCTTCCATCCTAACCTCAGAATGTGAGTTCTG
GGCCGTAATGGGACCATCCTTTCCTTTAAGTGAGGGGTGAAAGGGCTTCC
AGGGGCATCACTCCTCCCTGGGGTTCTAGGGGTAGACCCGTCCCTAGGTA
TCcaatatttataaatttcattACAATTCTTTTAAATTACTCAAGGACTC
CCCTCAGTGCTTGAGCAATCGATCGTACGATAATTATAGTAGTATCTCTC
AGAAGATATCTCTCACATATACGTTCTATCTACGTCACTGGTTATTTCAA
GGTTAATTAGTTAGGATTATATCTCTCACATATATCCTGCCTTCGTCATC
agttatttcaaaattaattagttagcaaattagaaaatttttcgaaattt
cgttAATCAAAACTTCATGTCAATTAGAAGAGAGATTTTGATGCTATCTA
CATAAAAATACTTGATATTGACTTCGAGTCTAGGAAAATTTGGAAATCGC
GTAGAATCTCGTCAAAGTGAATTTAATTTCCTGTTGTGGAGGAggaaaag
ctaaaaatattgtTGATGAGGTCAAAACCTAACCTAATACGACACCCGCA
ATAGTTTTCATCAAATCTTGTAAGGCCCTGTCTTGGCGAGAACTATTGTC
TACCAGCTGCATCGTGATTCGACGAAGCATCTCGTCGGATGCAGGCTCTT
CCTCCAACGACATTAGTACGGAAGATGAATGTCTAGTTTTGGCGacttta
ttaaaattttcctgGGTCTCAAATGAATGAACAAGACAGCGCCCAGGGGC
CGGACAGTTGCGCGTAGCGGTCCTACAACTGCACTTAAGGCTGTTATTCG
CTTGAATCTTGGCGGTTAATTAGtttctatttaaaaaattttgtttcgtT
TCAATCAATTATAAGTAAATTAGTTTTCTCCACCAGAAGTAGTTTTCTCA
ATGACGTATCTGTTAACGAGC Coding sequence (CDS) from alignment at scaffold_27:41369..44389 >TCONS_00056267 ID=TCONS_00056267|Name=TCONS_00056267|organism=Clytia hemisphaerica|type=CDS|length=1530bp|location=Sequence derived from alignment at scaffold_27:41369..44389 (Clytia hemisphaerica) CTAATCCACTACCTTTTTTCGATTTCTACACTCTTTAGCAATGTGTCCCC AGCGATAGCACTGTGTACACTTTTCTTGACTTGGGCCTTTCGTTGGAGGC CTATTGTTTCTGCTTTGGTCCCTCTTCCTCAATTGACATTCTCTCATCAT ATTTCCTCGTCGGTTGCAATAGTAACATACCATCGGTGGTCTTTCACTGT TCCTATTGTTTGCACTAGGCCTCATGGCTTCCACTGCTGCGAGGATGCTG TTCATCGTGGCTGTATCGTCTATTGGTGGATTAACTGACTCTTTTAATAG TAATGCGTGTGTGGCATCACTGTATGTTCTTGGCTGTTTCATTTGGATAT AGTTCCTATATGGGATGTCCAAACCTGCAATCATTATATCCAGTTTCGTT TGGTCGGCGACCTGTAAATTTTGTGAGAGCCTCTCTACTCTCTCCAGGTA CCTCGTTATGGTATCCCCGTTTTGTTTGATCCCGTGGAGTTCCTGTCTTT TCCTGTACTTCAGTTCAGGAGCATCAAACTCTTTACGAAGGGATTTTGTT AGCTCTTTGTAATTGTCCTTCACTATGGACGGTAGAGTAAAATAAAAGGT GTACGCCCTTTTCATTAGAAGTAAAGGAACGACCCTTGCTTTTTGTTTGT CGTCTAATTGATAAAATGACAACGATATATCAAGTTTGGTAATGAATTCG ACTACATCATCACTCGGATTCTCTCCAAATTTGGGGAGTGATGAGATGTC TACCTTGTTTGCCAACAAGGCAGCAACAGAAACCGAATCTAGGACTGAAT CCATTCTCTTCGGTTCCTCAACTTGGGCTTTTTGATCTTCTTTCCCTTTT GATTCTAACCGTGTTCTACGGAATAGTGGGGTAGAACAATCAACTGGAAG AGgcgttttagaaaaaaacagtcCTCCCATGTGTGTGACTGGGTCTGAGG ATTCTAATAAGATCCTTTCTTCGAGGTTGTCTCGGGTTTTAGAAATCTTA TATACAAACTGGCCAAGGATGCATTCAGATTTCTGGAGAGTTTCTAgaag tttttcaatttctccTCTCAACTCTATGGAATGTAAGTAGTCTCCTGACG AGAGCTCCTCTTCTACTTCTTTTAGCCCAATATATATTCTTTTGGACTCC TCAGATATTGCTTTACCTTGTTCAATTCCCCTTCTTTTAAGGGACTCTAT TGCTTGGAGCGTAGGGATTTCGTCTGTCTCTTCTTGTGTATCCCTACCAC GCCTGACGTATTGTTCAAGCTGTTCGTTAACGTCTTTCAGGGTATTGACG TACTGTCTCTTCTCAATGGACAATGTTTCTATATCCACTTCTAGAGTTTG TACTAGTTTTATGATAGCAGAGTGTTCTGCGTTCTTGGGATTGGATTCTT CTTTTAAGTGTGGTCGGTTATTTATTCCACGATATTCTTCGGTTAATGGA TCCAATCCTTGTCCTAAGTGTGTCTGGATTGCGCTCAACGCATTCCTTTG AGCCACTTCCAGTTCTTCGTAACTTGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00056267-exon-scaffold_27-1491911889:41369..44389 | TCONS_00056267-exon-scaffold_27-1491911889:41369..44389 | Clytia hemisphaerica | exon |
TCONS_00056267-exon-scaffold_27-1510915933:41369..44389 | TCONS_00056267-exon-scaffold_27-1510915933:41369..44389 | Clytia hemisphaerica | exon |
TCONS_00056267-exon-scaffold_27-1575043694:41369..44389 | TCONS_00056267-exon-scaffold_27-1575043694:41369..44389 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_27 | supercontig | scaffold_27:41369..44389 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0008270 | zinc ion binding |
GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0003676 |
nucleic acid binding |
molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
|