TCONS_00056269 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056269
Unique NameTCONS_00056269
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length836

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056269 ID=TCONS_00056269|Name=TCONS_00056269|organism=Clytia hemisphaerica|type=transcript|length=836bp
ATTTCTAGTTCTGGAGAGGCTTTAGCGGACACCATAAAAGCAAGCGGTTC
AGCAATCCGCGACGTTGAAGAAGGTGGTGCAAGTCTCTTGGACAGTTTCT
TTGGTGGCATTCCCGGCATTCTCGGAATGATAGCATTGTTGTTAGTGCTG
CTGATCATCGCTTACGTTGTATACCGAAAGTATCAGTCCTCGACAACCAA
CAACAGTGCTAATCCCAGGGTGATACAGAAGGTCGCCGACAACCCGGACA
TGTTAAATGGACTCGCCATGCGGCTGATGAAGGATACAACATCGACACCG
ACAAATttgtaaatgaaaaaaaaaaaaatctttctaacACCTCTATCTAT
CTACCTTACTTTCTATTTTACCtttcctttacttttagaaTAAGAATTAA
ACAAATTAACCATGGATAATGAACAATTCATAGACGAATTCATTTTGGAT
CTGACAGAAAGCTGCCGACTGTCGGATGGTGATGACGAAGAAGAGACAAC
AGACTTTATAGTACAGAAACAGCCACAAGAACCATCAAGGACGCCAACAT
CATTGCCACAACAAGGCGACCCTAAGCAAACTCACTCAAGGCGGCAAGCG
AAACAACGAAGACAACCGAACGAAGACTTGCGCAAAGTGATCTAGAGGTC
AAAGAAGCTTAAAGCACTACAAAAACCTGCAAGAAAGACAAGACGAGTGG
TTACCCTCGAGAAGAGAAGATGGTTCGAGTTGGTGAGCGAAGAGGCATTC
ATGTGGGACATCAGCCATCTCCGGACTCTTTATTTCCGAAAACATGGAAA
AGCACCGCCCATGTGGACGGGTGGCAACAGAGGAAG
Run BLAST on NCBI

protein sequence of TCONS_00056269-protein

>TCONS_00056269-protein ID=TCONS_00056269-protein|Name=TCONS_00056269-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
ISSSGEALADTIKASGSAIRDVEEGGASLLDSFFGGIPGILGMIALLLVL
LIIAYVVYRKYQSSTTNNSANPRVIQKVADNPDMLNGLAMRLMKDTTSTP
TNL
Run BLAST on NCBI

transcript from alignment at scaffold_27:57896..58731

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056269 ID=TCONS_00056269|Name=TCONS_00056269|organism=Clytia hemisphaerica|type=transcript|length=836bp|location=Sequence derived from alignment at scaffold_27:57896..58731 (Clytia hemisphaerica)
CTTCCTCTGTTGCCACCCGTCCACATGGGCGGTGCTTTTCCATGTTTTCG
GAAATAAAGAGTCCGGAGATGGCTGATGTCCCACATGAATGCCTCTTCGC
TCACCAACTCGAACCATCTTCTCTTCTCGAGGGTAACCACTCGTCTTGTC
TTTCTTGCAGGTTTTTGTAGTGCTTTAAGCTTCTTTGACCTCTAGATCAC
TTTGCGCAAGTCTTCGTTCGGTTGTCTTCGTTGTTTCGCTTGCCGCCTTG
AGTGAGTTTGCTTAGGGTCGCCTTGTTGTGGCAATGATGTTGGCGTCCTT
GATGGTTCTTGTGGCTGTTTCTGTACTATAAAGTCTGTTGTCTCTTCTTC
GTCATCACCATCCGACAGTCGGCAGCTTTCTGTCAGATCCAAAATGAATT
CGTCTATGAATTGTTCATTATCCATGGTTAATTTGTTTAATTCTTAttct
aaaagtaaaggaaaGGTAAAATAGAAAGTAAGGTAGATAGATAGAGGTgt
tagaaagatttttttttttttcatttacaaATTTGTCGGTGTCGATGTTG
TATCCTTCATCAGCCGCATGGCGAGTCCATTTAACATGTCCGGGTTGTCG
GCGACCTTCTGTATCACCCTGGGATTAGCACTGTTGTTGGTTGTCGAGGA
CTGATACTTTCGGTATACAACGTAAGCGATGATCAGCAGCACTAACAACA
ATGCTATCATTCCGAGAATGCCGGGAATGCCACCAAAGAAACTGTCCAAG
AGACTTGCACCACCTTCTTCAACGTCGCGGATTGCTGAACCGCTTGCTTT
TATGGTGTCCGCTAAAGCCTCTCCAGAACTAGAAAT

Coding sequence (CDS) from alignment at scaffold_27:57896..58731

>TCONS_00056269 ID=TCONS_00056269|Name=TCONS_00056269|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at scaffold_27:57896..58731 (Clytia hemisphaerica)
ttacaaATTTGTCGGTGTCGATGTTGTATCCTTCATCAGCCGCATGGCGA
GTCCATTTAACATGTCCGGGTTGTCGGCGACCTTCTGTATCACCCTGGGA
TTAGCACTGTTGTTGGTTGTCGAGGACTGATACTTTCGGTATACAACGTA
AGCGATGATCAGCAGCACTAACAACAATGCTATCATTCCGAGAATGCCGG
GAATGCCACCAAAGAAACTGTCCAAGAGACTTGCACCACCTTCTTCAACG
TCGCGGATTGCTGAACCGCTTGCTTTTATGGTGTCCGCTAAAGCCTCTCC
AGAACTAGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035443XLOC_035443Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056269-exon-scaffold_27-1491911889:57896..58731TCONS_00056269-exon-scaffold_27-1491911889:57896..58731Clytia hemisphaericaexon
TCONS_00056269-exon-scaffold_27-1510915933:57896..58731TCONS_00056269-exon-scaffold_27-1510915933:57896..58731Clytia hemisphaericaexon
TCONS_00056269-exon-scaffold_27-1575043694:57896..58731TCONS_00056269-exon-scaffold_27-1575043694:57896..58731Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056269-proteinTCONS_00056269-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:57896..58731 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.180894	0.145494	0.0681047	0	0	0	0	0.112895	0.078162	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056269 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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