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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056270 ID=TCONS_00056270|Name=TCONS_00056270|organism=Clytia hemisphaerica|type=transcript|length=1249bp
AGGTATTATTGGAAAGGTCTCCCCAGAGATGTGACCCGGTTCATAAACAA
TTGTGATGAATGTAACCAACACAAAGGTAGAACTCGAAAAGCCCCAATTT
TCTCTATTCCCATCACCTCACCATTCTCTGAAATCGTCTGTGACGTCCTG
GGTCCCTTAGTTCCAACCAAAAGTGGTAATAGGTATGTTATCTCCTTCAT
GGATCGATACACGTCTTGGCCGGAGGCTTTCGCGGTCAAATCTATCGAAA
CAACAGTGGTTGCAAGACTACTTGTTGAAGAAATAATCTTTCGTTTCGAA
ACTCCAAAAACATTCTCTACAGACCAAGGAACTAACTTTACCTCTAAACT
GATGAATGCCGTTTGTCAGCGATTAGGTATTAAGAAAATCGAGTCTACCC
CATACCATCCACAATCAAACGGATTTATTGAACGAATGAATCAAGTGATT
GTCACTGGAATCGCTCACCATATAAATGCGAATCACACTAACTGGGACAC
ATTACTACCAGGAGTTTTATTTGCTCATAGGACGTCTGTGGTTAGAACAC
GAGGCAGATCCCCTTACGAACTATTGTTTGGAAGACGCCCCATTTTACCC
CCTGATGTAGAAAATCTTCCTAATGAGGTTCTAACTTTAGGAACGGAAGA
TCACATGAAACGACTAAATGCGAATCTCACACACGCTCGAAATATCTCGG
AAGTTAACATGAACAAAGCCCAAGTCAAAAGCGAACATGACCATGAAGAA
GATGACTTTAAACAATATCCGATTGGTTCTTTTGTATGGCTGACAAGTCA
TAAGAGCAAAAAGGGTcgatcaaagaaatttttacaaaaattcactGGTC
CCCACCAAGTCGTGGAATTGCAACCCCCTGTGAATTATAAACTAAAAACC
CCAAATAGCAGTTTACTCAAAGGATTTGTACATCATGACAGGTTGAAGCC
ACATAACGGTCAACTTGTTGATGTCAAACGAGAAGAGACTTCAAAAACCC
CCCAGATAGAAGAAGCAGAGTGGGAAAGCGAAGATGACATCCCCTTAATA
GAACTGAAGAGGAGACTacaagaagaaaaggaagataATTTACCACTCTC
TGagttaaaaaaatctctaaacAAGAAAAAACACAAGACATgtgatgaaa
caaatgaaacaaccAAAGAGGAAACAGGAAATGACGCTACCTCTGATAGT
CAAACAAATAATGattaaatgaaacaaaattcaaatcacgaaacaaaat Run BLAST on NCBI protein sequence of TCONS_00056270-protein >TCONS_00056270-protein ID=TCONS_00056270-protein|Name=TCONS_00056270-protein|organism=Clytia hemisphaerica|type=polypeptide|length=405bp
RYYWKGLPRDVTRFINNCDECNQHKGRTRKAPIFSIPITSPFSEIVCDVL
GPLVPTKSGNRYVISFMDRYTSWPEAFAVKSIETTVVARLLVEEIIFRFE
TPKTFSTDQGTNFTSKLMNAVCQRLGIKKIESTPYHPQSNGFIERMNQVI
VTGIAHHINANHTNWDTLLPGVLFAHRTSVVRTRGRSPYELLFGRRPILP
PDVENLPNEVLTLGTEDHMKRLNANLTHARNISEVNMNKAQVKSEHDHEE
DDFKQYPIGSFVWLTSHKSKKGRSKKFLQKFTGPHQVVELQPPVNYKLKT
PNSSLLKGFVHHDRLKPHNGQLVDVKREETSKTPQIEEAEWESEDDIPLI
ELKRRLQEEKEDNLPLSELKKSLNKKKHKTCDETNETTKEETGNDATSDS
QTNND Run BLAST on NCBI transcript from alignment at scaffold_27:60642..61890 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056270 ID=TCONS_00056270|Name=TCONS_00056270|organism=Clytia hemisphaerica|type=transcript|length=1249bp|location=Sequence derived from alignment at scaffold_27:60642..61890 (Clytia hemisphaerica)
attttgtttcgtgatttgaattttgtttcatttaatCATTATTTGTTTGA
CTATCAGAGGTAGCGTCATTTCCTGTTTCCTCTTTggttgtttcatttgt
ttcatcacATGTCTTGTGTTTTTTCTTgtttagagatttttttaactCAG
AGAGTGGTAAATtatcttccttttcttcttgtAGTCTCCTCTTCAGTTCT
ATTAAGGGGATGTCATCTTCGCTTTCCCACTCTGCTTCTTCTATCTGGGG
GGTTTTTGAAGTCTCTTCTCGTTTGACATCAACAAGTTGACCGTTATGTG
GCTTCAACCTGTCATGATGTACAAATCCTTTGAGTAAACTGCTATTTGGG
GTTTTTAGTTTATAATTCACAGGGGGTTGCAATTCCACGACTTGGTGGGG
ACCagtgaatttttgtaaaaatttctttgatcgACCCTTTTTGCTCTTAT
GACTTGTCAGCCATACAAAAGAACCAATCGGATATTGTTTAAAGTCATCT
TCTTCATGGTCATGTTCGCTTTTGACTTGGGCTTTGTTCATGTTAACTTC
CGAGATATTTCGAGCGTGTGTGAGATTCGCATTTAGTCGTTTCATGTGAT
CTTCCGTTCCTAAAGTTAGAACCTCATTAGGAAGATTTTCTACATCAGGG
GGTAAAATGGGGCGTCTTCCAAACAATAGTTCGTAAGGGGATCTGCCTCG
TGTTCTAACCACAGACGTCCTATGAGCAAATAAAACTCCTGGTAGTAATG
TGTCCCAGTTAGTGTGATTCGCATTTATATGGTGAGCGATTCCAGTGACA
ATCACTTGATTCATTCGTTCAATAAATCCGTTTGATTGTGGATGGTATGG
GGTAGACTCGATTTTCTTAATACCTAATCGCTGACAAACGGCATTCATCA
GTTTAGAGGTAAAGTTAGTTCCTTGGTCTGTAGAGAATGTTTTTGGAGTT
TCGAAACGAAAGATTATTTCTTCAACAAGTAGTCTTGCAACCACTGTTGT
TTCGATAGATTTGACCGCGAAAGCCTCCGGCCAAGACGTGTATCGATCCA
TGAAGGAGATAACATACCTATTACCACTTTTGGTTGGAACTAAGGGACCC
AGGACGTCACAGACGATTTCAGAGAATGGTGAGGTGATGGGAATAGAGAA
AATTGGGGCTTTTCGAGTTCTACCTTTGTGTTGGTTACATTCATCACAAT
TGTTTATGAACCGGGTCACATCTCTGGGGAGACCTTTCCAATAATACCT Coding sequence (CDS) from alignment at scaffold_27:60642..61890 >TCONS_00056270 ID=TCONS_00056270|Name=TCONS_00056270|organism=Clytia hemisphaerica|type=CDS|length=1218bp|location=Sequence derived from alignment at scaffold_27:60642..61890 (Clytia hemisphaerica)
ttaatCATTATTTGTTTGACTATCAGAGGTAGCGTCATTTCCTGTTTCCT
CTTTggttgtttcatttgtttcatcacATGTCTTGTGTTTTTTCTTgttt
agagatttttttaactCAGAGAGTGGTAAATtatcttccttttcttcttg
tAGTCTCCTCTTCAGTTCTATTAAGGGGATGTCATCTTCGCTTTCCCACT
CTGCTTCTTCTATCTGGGGGGTTTTTGAAGTCTCTTCTCGTTTGACATCA
ACAAGTTGACCGTTATGTGGCTTCAACCTGTCATGATGTACAAATCCTTT
GAGTAAACTGCTATTTGGGGTTTTTAGTTTATAATTCACAGGGGGTTGCA
ATTCCACGACTTGGTGGGGACCagtgaatttttgtaaaaatttctttgat
cgACCCTTTTTGCTCTTATGACTTGTCAGCCATACAAAAGAACCAATCGG
ATATTGTTTAAAGTCATCTTCTTCATGGTCATGTTCGCTTTTGACTTGGG
CTTTGTTCATGTTAACTTCCGAGATATTTCGAGCGTGTGTGAGATTCGCA
TTTAGTCGTTTCATGTGATCTTCCGTTCCTAAAGTTAGAACCTCATTAGG
AAGATTTTCTACATCAGGGGGTAAAATGGGGCGTCTTCCAAACAATAGTT
CGTAAGGGGATCTGCCTCGTGTTCTAACCACAGACGTCCTATGAGCAAAT
AAAACTCCTGGTAGTAATGTGTCCCAGTTAGTGTGATTCGCATTTATATG
GTGAGCGATTCCAGTGACAATCACTTGATTCATTCGTTCAATAAATCCGT
TTGATTGTGGATGGTATGGGGTAGACTCGATTTTCTTAATACCTAATCGC
TGACAAACGGCATTCATCAGTTTAGAGGTAAAGTTAGTTCCTTGGTCTGT
AGAGAATGTTTTTGGAGTTTCGAAACGAAAGATTATTTCTTCAACAAGTA
GTCTTGCAACCACTGTTGTTTCGATAGATTTGACCGCGAAAGCCTCCGGC
CAAGACGTGTATCGATCCATGAAGGAGATAACATACCTATTACCACTTTT
GGTTGGAACTAAGGGACCCAGGACGTCACAGACGATTTCAGAGAATGGTG
AGGTGATGGGAATAGAGAAAATTGGGGCTTTTCGAGTTCTACCTTTGTGT
TGGTTACATTCATCACAATTGTTTATGAACCGGGTCACATCTCTGGGGAG
ACCTTTCCAATAATACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056270-exon-scaffold_27-1491911889:60642..61890 | TCONS_00056270-exon-scaffold_27-1491911889:60642..61890 | Clytia hemisphaerica | exon |
| TCONS_00056270-exon-scaffold_27-1510915933:60642..61890 | TCONS_00056270-exon-scaffold_27-1510915933:60642..61890 | Clytia hemisphaerica | exon |
| TCONS_00056270-exon-scaffold_27-1575043694:60642..61890 | TCONS_00056270-exon-scaffold_27-1575043694:60642..61890 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_27 | supercontig | scaffold_27:60642..61890 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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