TCONS_00056249 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056249
Unique NameTCONS_00056249
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1046

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056249 ID=TCONS_00056249|Name=TCONS_00056249|organism=Clytia hemisphaerica|type=transcript|length=1046bp
tttcatcctcgattttggcactttcataagaatacttgaccctcatccaa
agtacactattctaataaaaaaagcgtgtattctcTTTTATAAAAGATTA
TATAATATAATTAGTGACCATGCGTGTAGATGATAGAATCGTCTAGAATT
GTCTCGATAATTATACGACCAAGATGCCGTGGAAACTGTTGGTGCTGATT
GGTATTTTAAAATTTACTCTCATTCGAATTGGTgctgaaaaatgctttaa
aaagGTGCCACAGAATTACCATGGTGTCTCCCCATTAGTTGTCATTGATA
AAGAAGTGAGTGGGAACGTTTTGAGAGGTATCATCCCCGTCTTATCACCA
GAGAACATCGTCCACATCAAATTTCGTATCAACCAATGGACGAATATCGA
ATGGTGTGCAATACTCCAATTCTTTAAAGGTGACGGAGTTGGGGTAGTCT
ATGGTCACAGACTCCCATTGGTCATGTTAAAACAACAACAAGGAAATCAA
CATATCGAACTTAGTTCGTCAGTGGATGGCGTCTGGAACCACTGGTATGG
CGTTTATTCGCCAAAGTTGAATTACGATTACGACGTCGAGTTCCGGCACA
GATACAAAGGATCGGGAGTATACGTATTCACGATCGTCGTGAATGGAGAA
ATTGTAATGACCAAAGATAACTACCAAGCCAAGCAATTTTATGATGTCAA
GATGTACACAGGTATGCCACAAGCAGCCTTTTGTGGTGGAGTCACTATCA
GCTATCTAGCAGTGaccaattttttgtaaaatgcaaaaaaaatttggagc
TTAAACAGAATTCGAAACCTTCTTACATTTGACCgacagaaaataatttt
taatgcCAAACCTTaggtttgatgaaattgatttgtttaataacaatatt
ttgaaatcttagcttttcatagattttagTGCTTCTCATAGttcttgttt
ttaatattttcaccgTATTTTCCATTGCTTTTGCTTATACTTTTGGGGCT
GGTCTGACCCGAAAGGTTGTGCTATTTCGACAGGATTGCGATTCAG
Run BLAST on NCBI

transcript from alignment at scaffold_27:158299..161311+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056249 ID=TCONS_00056249|Name=TCONS_00056249|organism=Clytia hemisphaerica|type=transcript|length=3013bp|location=Sequence derived from alignment at scaffold_27:158299..161311+ (Clytia hemisphaerica)
tttcatcctcgattttggcactttcataagaatacttgaccctcatccaa
agtacactattctaataaaaaaagcgtgtattctcTTTTATAAAAGATTA
TATAATATAATTAGTGACCATGCGTGTAGATGATAGAATCGTCTAGAATT
GTCTCGATAATTATACGACCAAGATGCCGTGGAAACTGTTGGTGCTGATT
GGTATTTTAAAATTTACTCTCATTCGAATTGGTgctgaaaaatgctttaa
aaaggTAAGCAAAAAAACTTCTCGGGTAGATAGTTATTCTCCGAGTGTGG
TCGAAAATGTACGAGCTTTTTAAGccagaataaataaaaatttgtttgaa
atagATGAAAGGAAAAGATTTCTAccgaaaaaatctttctttggcGTGTT
ATGTTTGATGCAATACACTTTttggaaaagttaaaaaaatttgttcacat
ttctttctttgtccaagattttttttgttGCAATCTTAGGTCAGAAAGCC
CCATTGCGGGGCAATTATACCTTGTTTTTGCAACTGGGAAATCAAAGCCT
AATTCCTTGTATTTTAGGTGCCACAGAATTACCATGGTGTCTCCCCATTA
GTTGTCATTGATAAAGGTATGGGTACAATTCTTTATACAACACATTTATA
GATAcacttttcaaaataatcaaaaaggcgtagtggtatagtggttatca
tcctNTATAGATACACTTTTCAcacaataaattgaagttgagataagaat
tgtttgatacttaaagtttcacgcaacttttcgtcacgatcttcagtcaa
aaattctatacacttttcaaaataattaaataattagatacacttttcaa
aatattcaaaaaggcgtagtggtatacagtagtggttatcatccttgact
cccacatgggaggcccgagttcgatactcaccgtgtctctacgattcact
tggtcAACCCATGCTATGTGAGGGGAATTaggtaccattactctgataca
agagtgtgggtaggttagacagacattgtgacgtgccgtggcactcataa
ggttTGTTCTCGCGTGAGTATCGCTCTCCTAGTGTCGTTCAGACACTAGC
CCAATGCTGTTCAAATCATTACCAAGAGATATACATGACATGACTAACAG
TTTCAGAAATGCctccaaacaaaaatttgaccaacattgggctattccaa
aaaaggTTTGTACCCCATATGTTGAGgagatcttttaaaaaaaaggttaC
CCCCTGgattattttccaatttttcaagaCTGCCTTGGATTTTCAACccg
attttactgaccaggcctggattttatcattcaaaaaaccagaccactct
ggattttttattttccagaccaccctggacgtcacacctcctcaacatag
ggagTACAGACTATTTCTTAAATAGCCCATTTCAAAGATGTTCAAAACAA
ACCACTATTTTCGGCCTACTCAGTAGGactgttttctgatttttcgaaCC
TTCGAAGTCCCTGTTTCCAGGTctaaaaaggcacccttaaggtgCCGCGC
CCTCCACTTGCCTAGGTACCCCCTCCCTCCAGAGTAATGACAGCCGAATT
TATagttcatgatatgcaccattgcaatgtcttctgacattacatcatag
acccaatagctgattggttgtaagtgacgtaaaatcagtcaattcggcac
tttcaaccaatcagctgttgggtccgttgAAGACGTTGCAATGGTTCATA
TCATGAACATGTAATTCAACTTTTTTATATGACAGACGAAGAAGTGAGTG
GGAACGTTTTGAGAGGTATCATCCCCGTCTTATCACCAGAGAACATCGTC
CACATCAAATTTCGTATCAACCAATGGACGAATATCGAATGGTGTGCAAT
ACTCCAATTCTTTAAAGGTTTGAAATTAAAGGTTTAATTTGCCAACCCCC
CCNATTGTGGACTGGGGCTTATAGAGGAACAAAAGttacataatttcgtg
aagtcattgcagtggtgcatatcatgaattacctTATTGTGGACTGGGGC
TTATAGAGgaacaatttccaaccccctggTTGAATAGTAGTAATCTTGCA
CCCCTATGTAGGTTATTATTTTTCGACATGCTAAAGTGATGATAAGGACT
ACCGATTTCGTACCAAAAGGCCGGCATAAAAGAGAATCACATTTCATCGA
GAAAACACAATACATAAGAACAGATAAGAAAAGTTCTTTCAGGTTTTTAT
TGTCACCAAATAGGGTGCAGTACGCAGTGCTGATTAGCCCCAataaggac
aaaaggtataaaCCTGCTCTGTCACCCAATCTtttgaaagaagatagttg
gacgaAAATTAATTTGACTTTTACCAAATATATATTATTCTTTTAGGTGA
CGGAGTTGGGGTAGTCTATGGTCACAGACTCCCATTGGTCATGTTAAAAC
AACAACAAGGAAATCAACATATCGAACTTAGTTCGTCAGTGGATGGCGTC
TGGAACCACTGGTATGGCGTTTATTCGCCAAAGTTGAATTACGATTACGA
CGTCGAGTTCCGGCACAGATACAAAGGATCGGGAGTATACGTATTCACGA
TCGTCGTGAATGGAGAAATTGTAATGACCAAAGATAACTACCAAGCCAAG
CAATTTTATGATGTCAAGATGTACACAGGTATGCCACAAGCAGCCTTTTG
TGGTGGAGTCACTATCAGCTATCTAGCAGTGaccaattttttgtaaaatg
caaaaaaaatttggagcTTAAACAGAATTCGAAACCTTCTTACATTTGAC
CgacagaaaataatttttaatgcCAAACCTTaggtttgatgaaattgatt
tgtttaataacaatattttgaaatcttagcttttcatagattttagTGCT
TCTCATAGttcttgtttttaatattttcaccgTATTTTCCATTGCTTTTG
CTTATACTTTTGGGGCTGGTCTGACCCGAAAGGTTGTGCTATTTCGACAG
GATTGCGATTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035429XLOC_035429Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056249-exon-scaffold_27-1491911889:158299..158552TCONS_00056249-exon-scaffold_27-1491911889:158299..158552Clytia hemisphaericaexon
TCONS_00056249-exon-scaffold_27-1510915933:158299..158552TCONS_00056249-exon-scaffold_27-1510915933:158299..158552Clytia hemisphaericaexon
TCONS_00056249-exon-scaffold_27-1575043694:158299..158552TCONS_00056249-exon-scaffold_27-1575043694:158299..158552Clytia hemisphaericaexon
TCONS_00056249-exon-scaffold_27-1491911889:158866..158914TCONS_00056249-exon-scaffold_27-1491911889:158866..158914Clytia hemisphaericaexon
TCONS_00056249-exon-scaffold_27-1510915933:158866..158914TCONS_00056249-exon-scaffold_27-1510915933:158866..158914Clytia hemisphaericaexon
TCONS_00056249-exon-scaffold_27-1575043694:158866..158914TCONS_00056249-exon-scaffold_27-1575043694:158866..158914Clytia hemisphaericaexon
TCONS_00056249-exon-scaffold_27-1491911889:160090..160215TCONS_00056249-exon-scaffold_27-1491911889:160090..160215Clytia hemisphaericaexon
TCONS_00056249-exon-scaffold_27-1510915933:160090..160215TCONS_00056249-exon-scaffold_27-1510915933:160090..160215Clytia hemisphaericaexon
TCONS_00056249-exon-scaffold_27-1575043694:160090..160215TCONS_00056249-exon-scaffold_27-1575043694:160090..160215Clytia hemisphaericaexon
TCONS_00056249-exon-scaffold_27-1491911889:160695..161311TCONS_00056249-exon-scaffold_27-1491911889:160695..161311Clytia hemisphaericaexon
TCONS_00056249-exon-scaffold_27-1510915933:160695..161311TCONS_00056249-exon-scaffold_27-1510915933:160695..161311Clytia hemisphaericaexon
TCONS_00056249-exon-scaffold_27-1575043694:160695..161311TCONS_00056249-exon-scaffold_27-1575043694:160695..161311Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:158299..161311 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0424768	0.0826578	0.240868	0.0938933	0.171722	0	0.386776	0.357096	0	0	0.3552	0.204572	4.00074	7.16385	6.59512	4.78277	0	0.817362	10.2638	8.82463	0.90617	0.673735	0.543187	1.59453	0	0	0.174786	0.372652	0.141548	0.144587
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056249 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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