TCONS_00056281 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056281
Unique NameTCONS_00056281
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1057

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056281 ID=TCONS_00056281|Name=TCONS_00056281|organism=Clytia hemisphaerica|type=transcript|length=1057bp
gcatcaaaaagctgattaCGTCGAGTGAAGATACTCCAATATGGCTAGAG
GATCAGGATGATTTCTCGGTTTTCCAAGACGTCAACATGACAGTTTTCAA
CCAGACTAGTAGAGAGACCGGAAAAGACCATTTCGACCCGCCCAATGCGA
TGCCAATTATAACGACCAACGGGTTTTGGCATAAGGCCGGCAAGGATTTT
AATCTTCAAAGGGTACTGGGAAGAACAGTTGTGTTATATTTTGAGAAAGA
TGATGACGACGAGGATGATACCGAGAGCGAAGACAACGAAGAAGACATTG
CTGAGTTGCATCggtttgagaaaaaacttaAACAGCTAAAAAAAAAAGCG
AATAATTCATTTGTGTTTATCAATTGTCTAAGATGGGAGATGGAAAACTT
CGAAGACAAACCTTTGCATCTACAAATAGTGCAACCAGCCATGAAGCCGT
TGCAAAGGATTTTAGACAGACGTTCATTGAAGAATTACAGCTTGTTGATA
AATGCAACTGGGAAAATTCTCGAGAAATGTGGACGCAGTGAGCAGCAAAT
CAAAGACTTTGCGAATGGTTATGTGGCAACTGTGGAGTCCTTCTATAAGA
ACTTAGACGCATTTATGGCTCCAAAATCTGCTAACACAAATACGGGTTCC
AGAAAACCAGTTATCAGCAAACCAAATTTGCTCCACATTTTCGACTATAT
AAGGAGTGCAGTTCATATGGAAGTGGACGAAATGTGTATCAAAAAAGCCA
AATCACGATGTGACTGTGGGAATCAGATTTCTTTCGCTTTCAAAAACATC
ATGAAAGCTATTGACCATCGACAATTGACACCTACCGAAATCAAATTGAT
GAAGGCACAGATTTCTACTGCAAATCTTGGGTGTGTGTCGCATAACGTGA
AACATACAATCGGCCAAAAGCAATATGCTGGCGTGCACATCAGTGTTCAG
AAGCTTCCTGAGGATTTGAGGgcttatttttcaaaaggttCGATTTTACC
TATAAAGCGTTTGTTTGTTAAATTGATTTCTaatatgtttcattttttct
gcTGACA
Run BLAST on NCBI

protein sequence of TCONS_00056281-protein

>TCONS_00056281-protein ID=TCONS_00056281-protein|Name=TCONS_00056281-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp
IKKLITSSEDTPIWLEDQDDFSVFQDVNMTVFNQTSRETGKDHFDPPNAM
PIITTNGFWHKAGKDFNLQRVLGRTVVLYFEKDDDDEDDTESEDNEEDIA
ELHRFEKKLKQLKKKANNSFVFINCLRWEMENFEDKPLHLQIVQPAMKPL
QRILDRRSLKNYSLLINATGKILEKCGRSEQQIKDFANGYVATVESFYKN
LDAFMAPKSANTNTGSRKPVISKPNLLHIFDYIRSAVHMEVDEMCIKKAK
SRCDCGNQISFAFKNIMKAIDHRQLTPTEIKLMKAQISTANLGCVSHNVK
HTIGQKQYAGVHISVQKLPEDLRAYFSKGSILPIKRLFVKLISNMFHFFC
Run BLAST on NCBI

transcript from alignment at scaffold_270:3832..9469+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056281 ID=TCONS_00056281|Name=TCONS_00056281|organism=Clytia hemisphaerica|type=transcript|length=5638bp|location=Sequence derived from alignment at scaffold_270:3832..9469+ (Clytia hemisphaerica)
gcatcaaaaagctgattaCGTCGAGTGAAGATACTCCAATATGGCTAGAG GATCAGGATGATTTCTCGGTTTTCCAAGACGTCAACATGACAGTTTTCAA CCAGGTTAGTTTTCTGTTAACCGGTGTGTCTATTGACGACAACTGCCCCA ACCAGTTTAGCTCAGGCTTTACTCAAAAATACTTCTAACCAGcactaaaa tataaaaaaaacatttcataatGCTACAGGTAAGGCTGGAATGTTAGTTT GTCGTCATAGATATTTGAGGTGGGTGGGTGGGTcggaaataaaattattt tggtcATTCTAAACATAAGTGAATACTGATAAAGCTATAAATGATTAAGT GAATAAATTAGTAAAATAAACGAGCCTTTAAATTGCTAAACCCAANCATT CTAAACATAAGTGAATACTGATAAAGCTATAAATGATTAAGTGAATAAAT TAGTAAAATAAACGAGCCTTTAAATTGCTAAACCCAACatttgtgaagaa aattctttttttttttgagatagCTAGCAATACACTTTTTTGAGTCGGCA AGTTTCGTGGAAGGGTCgttcgggtgacggcaaaccaacaactttttaag tccagcctaacGTAGACCAGAAGGAGTCTGCAGGCTAAAAACCAGAAgct tttttaatcattattcCTTTTAAAGTAAACCAAGCAAGATATATTGGCAT ACCTTATTTTTTTCTGTCATtccaaaacttcttttttttttgatggaaCT GAAAAGTTTTACAAGTGGGGGGCTTCCGAGGGTACAAAATACGGGAATAC CGgtaattttttcatgaaataccGACGTACCGgtcaaaaaattctaaaat accGGCCAAAATGTCCCAACGAGTACCGGAATACCGGAAATTGGGCCTTT CGATACCGGAATATCGGTCATTTTTCGTCCAATACCGGAATACcggtagc gagcacctcactaaaaaccgggatttttaatctcgtttcttagtgagttc cNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgag cccgaaaacccgggctcaaaacattcgaaaaagtcgcaaagtggaataga cgttaattgcgtaaaaaaacgcgggtgacgtctagtataggctagaaTAC CGGTCAATACCGGATTCTCggaagccccccccccttacaAAGGACATGAC AAGAAATGGTGAAATAGAGAAGTCAACTGTCATTTACAAACATAAATTCT CACCAGTGTCAAAATTCATATCCTACCAAAATAAATTGTTGCCATTCTCT CCAAAATAAGCATCGCTGTCATACTTTGCATTACTCTATTTTAATAGAGT CAACTAGTGCATCTTCTAAATTTTGTTTTTCTCTATTCAGACTAGTAGAG AGACCGGAAAAGACCATTTCGACCCGCCCAATGCGATGCCAATTATAACG ACCAACGGGTTTTGGCATAAGGCCGGCAAGGATTTTAATCTTCAAAGGTA TTTTTAATTCACACGCTTATTTTATTTGAAAGAAAAAAACTCAACCCTTC GTTCGTTTAGGGGGCCCCTTTAACGAAATTGTTTGATAACTTTTGATAGA CTTAATATATCGCCATAACATTTTTCAAATTTTGCATCTAAATTCACCTA AAAAATATGTAAAGGCAAGGGATCGATTTTTTTGCCACCTGCTAGGTTCG TGTATTTGACAGACGAGTCTAAAAATAGCTTTTTTGATAGTGTGGTGGCT GATGATGAAAAAATGTTTGAAGCCAAAAATCTTTCACTTATGCTTAGGGG GTCTCCAGCAGGTGGCAAACGCAAAATTCCGCCATTATGGAAAAGTGACC ATGAGCCAAAAATGCTCACCTATTTATTTTACCCCTACTATCAATCCCAG GTATGAAAATAACTATGTATAAAAAGTATTCTTCCCTTCGTTTATTCCCC TTTGAATCAAGGGGACAAGAGCTATGACCAAAAGTTTTAGAGTTGGTATT TCGGCCCATTTTGGGCCCATATACGCGTCCATCGGAGCTAAAGGCTTAAT TTCGCCCCTGATGAGTTTATGCGCCAAATTTGAGCCGAATCCAAGCACTC AGAATAAcacttttaaaatataattcgGATATACGGaaaatatttgattt gagaccACAAACCCTTCTCCATAAAAAAACTTACCACAACTTTTACGTGG ACTATTTTCTCTCTCATCATGTCTACACTTATaattttgacaacaaaaaa ttaatttgagcattttttaaaaaatgcaaGTATAACCCACTCCTACTAAT AAAGGCCAAAACGATCACCAAAAAGGAATATAAACATTCCAACTATTtgc tcctgaaaatttcatcttCACACTTACTGATTGTAAATTCTTTGCGTATT AGGGTACTGGGAAGAACAGTTGTGTTATATTTTGAGAAAGATGATGACGA CGAGGATGATACCGAGAGCGAAGACAACGAAGAAGACATTGCTGAGTTGC ATCggtttgagaaaaaacttaAACAGCTAAAAAAAAAAGCGAATAATTCA TTTGTGTTTATCAATTGTCTAAGATGGGAGATGGAAAACTTCGAAGACAA ACCTTTGCATCTACAAATAGTGCAACCAGCCATGAAGCCGTTGCAAAGGA TTTTAGACAGACGTTCATTGAAGAATTACAGCTTGTTGATAAATGCAACT GGGAAAGTAAGTTTGATATTTTGATATCATATTTTCTAAGCAAGAATAAT TCACTCGAAAGAAAGCTTTTTAAATCTTGGTACAAACccaaaaacaatgg aaaacgTGGGGAATAATCAGCAGAAGTGACAAATTTTAGCCTAAAAAGCA TTTTTTCCACGATTAGATAttaaaacttattctttatttCAAATCGTTGT TCTTTTATAATagacacgcttttttataacaatTAGTACATTTTGGCTGG GGCTCAgtcattcttaatttttcgaaattttcaggCTTGATATTTTTTAG CTGTTCTTAAAATCTAGAATTTATTGTGCATTACTTTGTAACCCTCGTTT CAAATTCTAAACTTCCATTTTTTAAGAGAAATAAACCCTGAAAAGCAAGG CTCAgcttgtttttaaattgttcttagattttgaccaaatttcaggctca cgttcttataaaattgtccttataaaaaacgtgtatgtacaatgtaattt aaaaaaatatatttttcaagatATAAACACGTTTCTATTAACAGATTCTC GAGAAATGTGGACGCAGTGAGCAGCAAATCAAAGACTTTGCGAATGGTTA TGTGGCAACTGTGGAGTCCTTCTATAAGAACTTAGACGCATTTATGGCTC CAAAATCTGCTAACACAAATACGGGTTCCAGAAAACCAGTTATCAGCAAA CCAAATTTGCTCCACATTTTCGACTATATAAGGAGTGCAGTTCATATGGA AGTGGTAGGTAACTTTTCAAAGCTCAAAATACATTTATCTGTGATAAACA AAAGGATAAAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATA GCCCTTACGGATGAGTGCagttcaaaaatatcaatatattTCATAGTCGT GTAAAGAAATCTTTTTAGCAAACTTATAATAATTGTCTTGTCTAATTGTA GAGTGTGTAATCACTCTTACCAAGTATTTCAAACTTCGCTGATATGTATA TTTTAGGACGAAATGTGTATCAAAAAAGCCAAATCACGATGTGACTGTGG GAATCAGATTTCTTTCGCTTTCAAAAACATCATGAAAGCTATTGACCATC GACAATTGACACCTACCGAAATCAAATTGATGAAGGCACAGATTTCTACT GCAAATCTTGGGTGTGTGTCGCATAACGTGAAACATACAATCGGCCAAAA GCAATATGCTGGCGTGCACATCAGTGTTCAGAAGCTTCCTGAGGATTTGA GGgcttatttttcaaaaggttCGATTTTACCTATAAAGCGTTTGTTTGTT AAATTGATTTCTaatatgtttcattttttctgcTGACA

Coding sequence (CDS) from alignment at scaffold_270:3832..9469+

>TCONS_00056281 ID=TCONS_00056281|Name=TCONS_00056281|organism=Clytia hemisphaerica|type=CDS|length=5265bp|location=Sequence derived from alignment at scaffold_270:3832..9469+ (Clytia hemisphaerica)
atcaaaaagctgattaCGTCGAGTGAAGATACTCCAATATGGCTAGAGGA
TCAGGATGATTTCTCGGTTTTCCAAGACGTCAACATGACAGTTTTCAACC
AGACTAGTAGAGAGACCGGAAAAGACCATTTCGACCCGCCCAATGCGATG
CCAATTATAACGACCAACGGGTTTTGGCATAAGGCCGGCAAGGATTTTAA
TCTTCAAAGGGTACTGGGAAGAACAGTTGTGTTATATTTTGAGAAAGATG
ATGACGACGAGGATGATACCGAGAGCGAAGACAACGAAGAAGACATTGCT
GAGTTGCATCggtttgagaaaaaacttaAACAGCTAAAAAAAAAAGCGAA
TAATTCATTTGTGTTTATCAATTGTCTAAGATGGGAGATGGAAAACTTCG
AAGACAAACCTTTGCATCTACAAATAGTGCAACCAGCCATGAAGCCGTTG
CAAAGGATTTTAGACAGACGTTCATTGAAGAATTACAGCTTGTTGATAAA
TGCAACTGGGAAAATTCTCGAGAAATGTGGACGCAGTGAGCAGCAAATCA
AAGACTTTGCGAATGGTTATGTGGCAACTGTGGAGTCCTTCTATAAGAAC
TTAGACGCATTTATGGCTCCAAAATCTGCTAACACAAATACGGGTTCCAG
AAAACCAGTTATCAGCAAACCAAATTTGCTCCACATTTTCGACTATATAA
GGAGTGCAGTTCATATGGAAGTGGACGAAATGTGTATCAAAAAAGCCAAA
TCACGATGTGACTGTGGGAATCAGATTTCTTTCGCTTTCAAAAACATCAT
GAAAGCTATTGACCATCGACAATTGACACCTACCGAAATCAAATTGATGA
AGGCACAGATTTCTACTGCAAATCTTGGGTGTGTGTCGCATAACGTGAAA
CATACAATCGGCCAAAAGCAATATGCTGGCGTGCACATCAGTGTTCAGAA
GCTTCCTGAGGATTTGAGGgcttatttttcaaaaggttCGATTTTACCTA
TAAAGCGTTTGTTTGTTAAATTGATTTCTaatatgtttcattttttctgc
TGAatcaaaaagctgattaCGTCGAGTGAAGATACTCCAATATGGCTAGA
GGATCAGGATGATTTCTCGGTTTTCCAAGACGTCAACATGACAGTTTTCA
ACCAGACTAGTAGAGAGACCGGAAAAGACCATTTCGACCCGCCCAATGCG
ATGCCAATTATAACGACCAACGGGTTTTGGCATAAGGCCGGCAAGGATTT
TAATCTTCAAAGGGTACTGGGAAGAACAGTTGTGTTATATTTTGAGAAAG
ATGATGACGACGAGGATGATACCGAGAGCGAAGACAACGAAGAAGACATT
GCTGAGTTGCATCggtttgagaaaaaacttaAACAGCTAAAAAAAAAAGC
GAATAATTCATTTGTGTTTATCAATTGTCTAAGATGGGAGATGGAAAACT
TCGAAGACAAACCTTTGCATCTACAAATAGTGCAACCAGCCATGAAGCCG
TTGCAAAGGATTTTAGACAGACGTTCATTGAAGAATTACAGCTTGTTGAT
AAATGCAACTGGGAAAATTCTCGAGAAATGTGGACGCAGTGAGCAGCAAA
TCAAAGACTTTGCGAATGGTTATGTGGCAACTGTGGAGTCCTTCTATAAG
AACTTAGACGCATTTATGGCTCCAAAATCTGCTAACACAAATACGGGTTC
CAGAAAACCAGTTATCAGCAAACCAAATTTGCTCCACATTTTCGACTATA
TAAGGAGTGCAGTTCATATGGAAGTGGACGAAATGTGTATCAAAAAAGCC
AAATCACGATGTGACTGTGGGAATCAGATTTCTTTCGCTTTCAAAAACAT
CATGAAAGCTATTGACCATCGACAATTGACACCTACCGAAATCAAATTGA
TGAAGGCACAGATTTCTACTGCAAATCTTGGGTGTGTGTCGCATAACGTG
AAACATACAATCGGCCAAAAGCAATATGCTGGCGTGCACATCAGTGTTCA
GAAGCTTCCTGAGGATTTGAGGgcttatttttcaaaaggttCGATTTTAC
CTATAAAGCGTTTGTTTGTTAAATTGATTTCTaatatgtttcattttttc
tgcTGAatcaaaaagctgattaCGTCGAGTGAAGATACTCCAATATGGCT
AGAGGATCAGGATGATTTCTCGGTTTTCCAAGACGTCAACATGACAGTTT
TCAACCAGACTAGTAGAGAGACCGGAAAAGACCATTTCGACCCGCCCAAT
GCGATGCCAATTATAACGACCAACGGGTTTTGGCATAAGGCCGGCAAGGA
TTTTAATCTTCAAAGGGTACTGGGAAGAACAGTTGTGTTATATTTTGAGA
AAGATGATGACGACGAGGATGATACCGAGAGCGAAGACAACGAAGAAGAC
ATTGCTGAGTTGCATCggtttgagaaaaaacttaAACAGCTAAAAAAAAA
AGCGAATAATTCATTTGTGTTTATCAATTGTCTAAGATGGGAGATGGAAA
ACTTCGAAGACAAACCTTTGCATCTACAAATAGTGCAACCAGCCATGAAG
CCGTTGCAAAGGATTTTAGACAGACGTTCATTGAAGAATTACAGCTTGTT
GATAAATGCAACTGGGAAAATTCTCGAGAAATGTGGACGCAGTGAGCAGC
AAATCAAAGACTTTGCGAATGGTTATGTGGCAACTGTGGAGTCCTTCTAT
AAGAACTTAGACGCATTTATGGCTCCAAAATCTGCTAACACAAATACGGG
TTCCAGAAAACCAGTTATCAGCAAACCAAATTTGCTCCACATTTTCGACT
ATATAAGGAGTGCAGTTCATATGGAAGTGGACGAAATGTGTATCAAAAAA
GCCAAATCACGATGTGACTGTGGGAATCAGATTTCTTTCGCTTTCAAAAA
CATCATGAAAGCTATTGACCATCGACAATTGACACCTACCGAAATCAAAT
TGATGAAGGCACAGATTTCTACTGCAAATCTTGGGTGTGTGTCGCATAAC
GTGAAACATACAATCGGCCAAAAGCAATATGCTGGCGTGCACATCAGTGT
TCAGAAGCTTCCTGAGGATTTGAGGgcttatttttcaaaaggttCGATTT
TACCTATAAAGCGTTTGTTTGTTAAATTGATTTCTaatatgtttcatttt
ttctgcTGAatcaaaaagctgattaCGTCGAGTGAAGATACTCCAATATG
GCTAGAGGATCAGGATGATTTCTCGGTTTTCCAAGACGTCAACATGACAG
TTTTCAACCAGACTAGTAGAGAGACCGGAAAAGACCATTTCGACCCGCCC
AATGCGATGCCAATTATAACGACCAACGGGTTTTGGCATAAGGCCGGCAA
GGATTTTAATCTTCAAAGGGTACTGGGAAGAACAGTTGTGTTATATTTTG
AGAAAGATGATGACGACGAGGATGATACCGAGAGCGAAGACAACGAAGAA
GACATTGCTGAGTTGCATCggtttgagaaaaaacttaAACAGCTAAAAAA
AAAAGCGAATAATTCATTTGTGTTTATCAATTGTCTAAGATGGGAGATGG
AAAACTTCGAAGACAAACCTTTGCATCTACAAATAGTGCAACCAGCCATG
AAGCCGTTGCAAAGGATTTTAGACAGACGTTCATTGAAGAATTACAGCTT
GTTGATAAATGCAACTGGGAAAATTCTCGAGAAATGTGGACGCAGTGAGC
AGCAAATCAAAGACTTTGCGAATGGTTATGTGGCAACTGTGGAGTCCTTC
TATAAGAACTTAGACGCATTTATGGCTCCAAAATCTGCTAACACAAATAC
GGGTTCCAGAAAACCAGTTATCAGCAAACCAAATTTGCTCCACATTTTCG
ACTATATAAGGAGTGCAGTTCATATGGAAGTGGACGAAATGTGTATCAAA
AAAGCCAAATCACGATGTGACTGTGGGAATCAGATTTCTTTCGCTTTCAA
AAACATCATGAAAGCTATTGACCATCGACAATTGACACCTACCGAAATCA
AATTGATGAAGGCACAGATTTCTACTGCAAATCTTGGGTGTGTGTCGCAT
AACGTGAAACATACAATCGGCCAAAAGCAATATGCTGGCGTGCACATCAG
TGTTCAGAAGCTTCCTGAGGATTTGAGGgcttatttttcaaaaggttCGA
TTTTACCTATAAAGCGTTTGTTTGTTAAATTGATTTCTaatatgtttcat
tttttctgcTGAatcaaaaagctgattaCGTCGAGTGAAGATACTCCAAT
ATGGCTAGAGGATCAGGATGATTTCTCGGTTTTCCAAGACGTCAACATGA
CAGTTTTCAACCAGACTAGTAGAGAGACCGGAAAAGACCATTTCGACCCG
CCCAATGCGATGCCAATTATAACGACCAACGGGTTTTGGCATAAGGCCGG
CAAGGATTTTAATCTTCAAAGGGTACTGGGAAGAACAGTTGTGTTATATT
TTGAGAAAGATGATGACGACGAGGATGATACCGAGAGCGAAGACAACGAA
GAAGACATTGCTGAGTTGCATCggtttgagaaaaaacttaAACAGCTAAA
AAAAAAAGCGAATAATTCATTTGTGTTTATCAATTGTCTAAGATGGGAGA
TGGAAAACTTCGAAGACAAACCTTTGCATCTACAAATAGTGCAACCAGCC
ATGAAGCCGTTGCAAAGGATTTTAGACAGACGTTCATTGAAGAATTACAG
CTTGTTGATAAATGCAACTGGGAAAATTCTCGAGAAATGTGGACGCAGTG
AGCAGCAAATCAAAGACTTTGCGAATGGTTATGTGGCAACTGTGGAGTCC
TTCTATAAGAACTTAGACGCATTTATGGCTCCAAAATCTGCTAACACAAA
TACGGGTTCCAGAAAACCAGTTATCAGCAAACCAAATTTGCTCCACATTT
TCGACTATATAAGGAGTGCAGTTCATATGGAAGTGGACGAAATGTGTATC
AAAAAAGCCAAATCACGATGTGACTGTGGGAATCAGATTTCTTTCGCTTT
CAAAAACATCATGAAAGCTATTGACCATCGACAATTGACACCTACCGAAA
TCAAATTGATGAAGGCACAGATTTCTACTGCAAATCTTGGGTGTGTGTCG
CATAACGTGAAACATACAATCGGCCAAAAGCAATATGCTGGCGTGCACAT
CAGTGTTCAGAAGCTTCCTGAGGATTTGAGGgcttatttttcaaaaggtt
CGATTTTACCTATAAAGCGTTTGTTTGTTAAATTGATTTCTaatatgttt
cattttttctgcTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035455XLOC_035455Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056281-exon-scaffold_270-1491911889:3832..3935TCONS_00056281-exon-scaffold_270-1491911889:3832..3935Clytia hemisphaericaexon
TCONS_00056281-exon-scaffold_270-1510915933:3832..3935TCONS_00056281-exon-scaffold_270-1510915933:3832..3935Clytia hemisphaericaexon
TCONS_00056281-exon-scaffold_270-1575043694:3832..3935TCONS_00056281-exon-scaffold_270-1575043694:3832..3935Clytia hemisphaericaexon
TCONS_00056281-exon-scaffold_270-1491911889:5422..5528TCONS_00056281-exon-scaffold_270-1491911889:5422..5528Clytia hemisphaericaexon
TCONS_00056281-exon-scaffold_270-1510915933:5422..5528TCONS_00056281-exon-scaffold_270-1510915933:5422..5528Clytia hemisphaericaexon
TCONS_00056281-exon-scaffold_270-1575043694:5422..5528TCONS_00056281-exon-scaffold_270-1575043694:5422..5528Clytia hemisphaericaexon
TCONS_00056281-exon-scaffold_270-1491911889:6434..6737TCONS_00056281-exon-scaffold_270-1491911889:6434..6737Clytia hemisphaericaexon
TCONS_00056281-exon-scaffold_270-1510915933:6434..6737TCONS_00056281-exon-scaffold_270-1510915933:6434..6737Clytia hemisphaericaexon
TCONS_00056281-exon-scaffold_270-1575043694:6434..6737TCONS_00056281-exon-scaffold_270-1575043694:6434..6737Clytia hemisphaericaexon
TCONS_00056281-exon-scaffold_270-1491911889:7276..7485TCONS_00056281-exon-scaffold_270-1491911889:7276..7485Clytia hemisphaericaexon
TCONS_00056281-exon-scaffold_270-1510915933:7276..7485TCONS_00056281-exon-scaffold_270-1510915933:7276..7485Clytia hemisphaericaexon
TCONS_00056281-exon-scaffold_270-1575043694:7276..7485TCONS_00056281-exon-scaffold_270-1575043694:7276..7485Clytia hemisphaericaexon
TCONS_00056281-exon-scaffold_270-1491911889:9138..9469TCONS_00056281-exon-scaffold_270-1491911889:9138..9469Clytia hemisphaericaexon
TCONS_00056281-exon-scaffold_270-1510915933:9138..9469TCONS_00056281-exon-scaffold_270-1510915933:9138..9469Clytia hemisphaericaexon
TCONS_00056281-exon-scaffold_270-1575043694:9138..9469TCONS_00056281-exon-scaffold_270-1575043694:9138..9469Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056281-proteinTCONS_00056281-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_270supercontigscaffold_270:3832..9469 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.54388 0.489572 0.28422 0.648817 0.846292 0.312084 0.215152 0.201423 0 0.174677 0 0.195042 0.111298 0.346752 0.0475128 0.152966 0.282662 0.547247 0 0.0465384 0.485404 0.414336 0.383755 0.348889 2.87478 2.1247 0.286834 0.73468 1.81099 6.00846
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056281 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top