TCONS_00056283 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056283
Unique NameTCONS_00056283
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length473

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056283 ID=TCONS_00056283|Name=TCONS_00056283|organism=Clytia hemisphaerica|type=transcript|length=473bp
AAGAAAAGTTAGCAAAAAGgtataaaactaaaaaagcaTAAAAACTACAA
TTATCGTTTTACATTTCGTTTCCCCGAAACCACTTTGGTGAGGTTTGATC
CAGTTTAACAagtgcattgataaaaaactctaAAGTTATGTGAATATCCT
TGCATATATAAAtcattttataatgacttttgcCCAAAAAGTGTCATAAA
CCTTCATTTTCATAggaaaaatcactaaaatattAACTCCAATATTCCTC
AAttatgaccccccccccattcAGAGTGTCCACACCCCTACAATTAAACA
CAGAAGAGTAGTATGCATTTTCCAAATACTACCATAAAATACTGTCTCTa
gaaataactttttcaaaatttctaacaagttttattttattttattttac
ttttagcTTTTTCATCCTTGTCCTCTCTGAAAGGTTTGTTGAAGAAAGGG
AGTCGTGCAGTTTTTcagtttct
Run BLAST on NCBI

transcript from alignment at scaffold_270:12143..12615

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056283 ID=TCONS_00056283|Name=TCONS_00056283|organism=Clytia hemisphaerica|type=transcript|length=473bp|location=Sequence derived from alignment at scaffold_270:12143..12615 (Clytia hemisphaerica)
agaaactgAAAAACTGCACGACTCCCTTTCTTCAACAAACCTTTCAGAGA
GGACAAGGATGAAAAAgctaaaagtaaaataaaataaaataaaacttgtt
agaaattttgaaaaagttatttctAGAGACAGTATTTTATGGTAGTATTT
GGAAAATGCATACTACTCTTCTGTGTTTAATTGTAGGGGTGTGGACACTC
TgaatggggggggggtcataaTTGAGGAATATTGGAGTTaatattttagt
gatttttccTATGAAAATGAAGGTTTATGACACTTTTTGGgcaaaagtca
ttataaaatgaTTTATATATGCAAGGATATTCACATAACTTtagagtttt
ttatcaatgcactTGTTAAACTGGATCAAACCTCACCAAAGTGGTTTCGG
GGAAACGAAATGTAAAACGATAATTGTAGTTTTTAtgcttttttagtttt
atacCTTTTTGCTAACTTTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035457XLOC_035457Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056283-exon-scaffold_270-1491911889:12143..12615TCONS_00056283-exon-scaffold_270-1491911889:12143..12615Clytia hemisphaericaexon
TCONS_00056283-exon-scaffold_270-1510915933:12143..12615TCONS_00056283-exon-scaffold_270-1510915933:12143..12615Clytia hemisphaericaexon
TCONS_00056283-exon-scaffold_270-1575043694:12143..12615TCONS_00056283-exon-scaffold_270-1575043694:12143..12615Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_270supercontigscaffold_270:12143..12615 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.537542	0.524188	0.152158	0.297726	0	0	0	0	0	0	0	0	0.178751	0	0	0	0	0	0	0	0.129931	0	0.308167	0.840506	0.288567	0.257539	0	0.589971	0.745787	2.27952
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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