TCONS_00056282 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056282
Unique NameTCONS_00056282
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length310

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056282 ID=TCONS_00056282|Name=TCONS_00056282|organism=Clytia hemisphaerica|type=transcript|length=310bp
NNGTATTTGACGAGAAGGCTGAATCTCGTCCAAAAGAGAAGGCTCAATCA
TTCGAAGAGGCAATATTCGAAGAGAAGGCTCAATCATTCGAAGAGGCAGT
ATTTGACGAGAAGGCTGAATCTCGTCCAAAAGGGAAGGCTCAATCATCCA
AAGAGGCAATATTCGAAGAGAAGGCTCAATTATACAAAGAGGCAGTATTG
AAAGAGAAAGCTGAATCAAGCGAAGAGGAAATGACAGACACTGCTATTGT
TGACAAAGATCATGATACTTATGAAGCCAACAAAAAACCAAGAACTTCCA
AAAGAAAAAC
Run BLAST on NCBI

protein sequence of TCONS_00056282-protein

>TCONS_00056282-protein ID=TCONS_00056282-protein|Name=TCONS_00056282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
VFDEKAESRPKEKAQSFEEAIFEEKAQSFEEAVFDEKAESRPKGKAQSSK
EAIFEEKAQLYKEAVLKEKAESSEEEMTDTAIVDKDHDTYEANKKPRTSK
RK
Run BLAST on NCBI

transcript from alignment at scaffold_270:12936..13472+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056282 ID=TCONS_00056282|Name=TCONS_00056282|organism=Clytia hemisphaerica|type=transcript|length=537bp|location=Sequence derived from alignment at scaffold_270:12936..13472+ (Clytia hemisphaerica)
NNGTATTTGACGAGAAGGCTGAATCTCGTCCAAAAGAGAAGGCTCAATCA
TTCGAAGAGGCAATATTCGAAGAGAAGGCTCAATCATTCGAAGAGGCAGT
ATTTGACGAGAAGGCTGAATCTCGTCCAAAAGGGAAGGCTCAATCATCCA
AAGAGGCAATATTCGAAGAGAAGGCTCAATTATACAAAGAGGCAGTATTG
AAAGAGAAAGCTGAATCAAGCGAAGAGGAAATGACAGACACTGCTATTGT
TGACAAAGGTTAATATATAATTCTAAATTTCAAGGTTTTGATGTTCTTTC
CAAAATCTAATCAAAATGTTCCATTCTttgctaaaatttgaataaaaata
accCAGAATAGGACTAAAACTTAAAAACGTTCTAAAAAAGAACTGCTTTT
TGACCAAATCTTAAAGAggactgatttttctactttttcccttTGCAACC
CTACCTGGGCCTCATGgcaatttctttgtgtttaGATCATGATACTTATG
AAGCCAACAAAAAACCAAGAACTTCCAAAAGAAAAAC

Coding sequence (CDS) from alignment at scaffold_270:12936..13472+

>TCONS_00056282 ID=TCONS_00056282|Name=TCONS_00056282|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at scaffold_270:12936..13472+ (Clytia hemisphaerica)
GTATTTGACGAGAAGGCTGAATCTCGTCCAAAAGAGAAGGCTCAATCATT
CGAAGAGGCAATATTCGAAGAGAAGGCTCAATCATTCGAAGAGGCAGTAT
TTGACGAGAAGGCTGAATCTCGTCCAAAAGGGAAGGCTCAATCATCCAAA
GAGGCAATATTCGAAGAGAAGGCTCAATTATACAAAGAGGCAGTATTGAA
AGAGAAAGCTGAATCAAGCGAAGAGGAAATGACAGACACTGCTATTGTTG
ACAAAGATCATGATACTTATGAAGCCAACAAAAAACCAAGAACTTCCAAA
AGAAAAGTATTTGACGAGAAGGCTGAATCTCGTCCAAAAGAGAAGGCTCA
ATCATTCGAAGAGGCAATATTCGAAGAGAAGGCTCAATCATTCGAAGAGG
CAGTATTTGACGAGAAGGCTGAATCTCGTCCAAAAGGGAAGGCTCAATCA
TCCAAAGAGGCAATATTCGAAGAGAAGGCTCAATTATACAAAGAGGCAGT
ATTGAAAGAGAAAGCTGAATCAAGCGAAGAGGAAATGACAGACACTGCTA
TTGTTGACAAAGATCATGATACTTATGAAGCCAACAAAAAACCAAGAACT
TCCAAAAGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035456XLOC_035456Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056282-proteinTCONS_00056282-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056282-exon-scaffold_270-1491911889:12936..13193TCONS_00056282-exon-scaffold_270-1491911889:12936..13193Clytia hemisphaericaexon
TCONS_00056282-exon-scaffold_270-1510915933:12936..13193TCONS_00056282-exon-scaffold_270-1510915933:12936..13193Clytia hemisphaericaexon
TCONS_00056282-exon-scaffold_270-1575043694:12936..13193TCONS_00056282-exon-scaffold_270-1575043694:12936..13193Clytia hemisphaericaexon
TCONS_00056282-exon-scaffold_270-1491911889:13421..13472TCONS_00056282-exon-scaffold_270-1491911889:13421..13472Clytia hemisphaericaexon
TCONS_00056282-exon-scaffold_270-1510915933:13421..13472TCONS_00056282-exon-scaffold_270-1510915933:13421..13472Clytia hemisphaericaexon
TCONS_00056282-exon-scaffold_270-1575043694:13421..13472TCONS_00056282-exon-scaffold_270-1575043694:13421..13472Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_270supercontigscaffold_270:12936..13472 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.86224	3.76629	3.57793	2.72257	0	0	0	0.845211	0	0	0	0	0	0.72752	0	0.641874	2.89937	1.08064	0	0	1.01843	0.496753	3.62321	4.75803	2.63882	3.70084	0.96289	4.6243	7.01474	19.8525
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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