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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056287 ID=TCONS_00056287|Name=TCONS_00056287|organism=Clytia hemisphaerica|type=transcript|length=782bp
TGCGATCAAACAACGAAGCCATAATCGCTGTCTCTCATCGTAAGAGGGCG
AAGAATTTAGTTAAAGCATTTGCGATGAACAAATTTTACATCGTTGAAGA
ATATGACTGGTGGAAACATTCCAAAGAAGCTTCCAAACTCAGATTGAGTG
GAAGTGTTACAGTGACCATATTGTCGTTAGCAACAGTTGTGTATCTATGG
AAACGATATCAATAAAAAGGAGTCAGAGGCTTGGATCTGATCGTTTTGCC
GGGGGAGACCAACAACGTTTGTTAATCGCCTTGTCTTAGAATGGTAAGAT
GGTATCACTTCGTTCCTGTAAATGCTGTAGAAACTAGGCGATGTTCGATA
TTCGAAATTTAGTAAACTATACCAGCGCAACGATATATTGGTGGTTTCAA
ACGATATTGGTGAAAGACTTCCTCGATCTTGAACTTTGAGGATGATAGGC
AATGATAACTGCATAATACTGCCTGATTTATAAGAATTTTCGCTCCAAAC
TCAAAAGAATTTGTGCATGAGAGTATTAGCAACAGAGCAAGTGAAAAATG
AatggaaatttgtatttttatacTAGCCCTGTTACGTTGCATTTGGTGTC
ATAATGATATGAAACAAAATTGTAGTAGACACCAAATACACACGGATCTA
GGGGAATTTTTATTCATGATTCATTAAGGACGAAAATGACTTTCAAAAGC
ActttatttgaattttgttaTGCTCTGAGAGGTTTCGACCAGTTTGGCCA
AATTAGACCATTTGGACCAATCTCATTTTAAT Run BLAST on NCBI transcript from alignment at scaffold_271:30528..33727- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056287 ID=TCONS_00056287|Name=TCONS_00056287|organism=Clytia hemisphaerica|type=transcript|length=3200bp|location=Sequence derived from alignment at scaffold_271:30528..33727- (Clytia hemisphaerica)
TGCGATCAAACAACGAAGCCATAATCGCTGTCTCTCATCGTAAGAGGTAA
GCATAAGAAGTACTAGTTTGTTTCCTAAACCTCGCTTCTTTCTGTATATA
GATAAATCTCGAAAAAAGAACTTTAGGCGAAAAAAATAGTGTTTCCGGAA
TACGGGTCAAGGAAAAAAGCTCTCATGCGTCCGGCCGGAAAAACTTTTTT
TGCTATTTTTGATCATTGAAATAGAACTTTTAAGATAACTTTTTAGTACA
AACAGTATGAAGTAAGCCCTGAATACTAATGTATCAATTACTAACTAACT
AAGTTTGCGGCCGGGTCAGAAAATTATTATTTTTTCACCCGGCCGGTTTC
CGGAAACACTACATTTTATTATTTTCGCTTTATCTATATTATCTGTCCCG
AAATGAAATTTAGTTCAGACTCATGTTGTAAAGTCTTTACGAGACAGACT
GGCTTTTTCCCTGCACTGATCCGTCTGCAACTTTTTATCAAGAAGTGACT
TTACGTACACTTTTTTTTAAAGAACATACAAAATTTTTGAAGCCTTTGGA
TGTTCTTAACATGCTCTTATTTTCCCCCATTTTGCAAGTATTTTTGTATT
CATTTTCCTAGGAAATCGGGTGTTTTAGAGTTCATAAAGGCTTAAAATGT
TCTCAACTTTTTCTTAACATTTTGGCCATCGAAGCCTTATGTTTTTATAT
ATTTTGTTCTTATAAAAAACGTGTATCGTTCAATCTTGAGGAGACGATTT
AGTCAATGGGTTCGTTAATGCTGTCCGCTAATTAAAGGACGGTAAACGCA
TTATTGTTGTCCTCAGTCTGAGTCAGCCAGTCAGTCAGGAATTAAACAAA
TGAAAAACTAGTCGTCCCCAATATAGAAGACTTGGCAAACACGCACTTTA
TAATAGATCTTATCGGAGTTTTTTATTTTTCTAAAAAAAGCGATTTATTG
TGGGATTGTTTCGGGAGAATTACCATAGAAATCTCTTAGGAATTCATCGA
GAGAATTCTATTGTAATACTCTCGAAACAATTCCACAATGCATCGCTTTT
TTGANAAAAACGTGTATCGTTCAATCTTGAGGAGACGATTTAGTCAATGG
GTTCGTTAATGCTGTCCGCTAATTAAAGGACGGTAAACGCATTATTGTTG
TCCTCAGTCTGAGTCAGCCAGTCAGTCAGGAATTAAACAAATGAAAAACT
AGTCGTCCCCAATATAGAAGACTTGGCAAACACGCACTTTATAATAGATC
TTATCGGAGTTTTTTATTTTTCTAAAAAAAGCGATGTATTGTGGGATTGT
TTCGGGAGTATTACCATAGAAATCTCTTAGGAATTCATCGAGAGAATTCT
ATTGTAATACTCTCGAAACAATTCCACAATGCATCGCTTTTTTGAAAAAA
TCAAAAACTCCGATAAGGTCTTTTTCCCCAAAGAGTCCCGGGAAGGTCCC
TTTCACTTTTTAAAAGGAATTGATGTTTTTTTTTCATTATTATAGGGCGA
AGAATTTAGTTAAAGCATTTGCGATGAACAAATTTTACATCGTTGAAGAA
TATGACTGGTGGAAACATTCCAAAGAAGCTTCCAAACTCAGGTGAGGAGA
TAGACGATGTTATCGTCCGTTACAGTGATAGTAAAGGCGGGAAAATATGG
CGGTATGGCGTTATGGCGGTAAACGGGAAAAAAATTGGCTGGAGAGTTTC
GAAGAGTGGCAGTTTACCGGCTGTAAACTCTTTTGGGCAAAAAAACCCGT
TTGCGAATTTTCTTCGGCTTTTGGCTTATTTCTTAGATAGTGATTTGTCT
TAGGCGTAGTAGTTTTAATCGCAAAGTTCACAAGAATGAACCGCTAGAAT
GGCTAAAATTTGAAAATTATACTATTTATTAAAAAAGGCCAACAAAACAC
CAAAAGACGTGTCAAACAGACAATTTTTTACTTTCTAGACCCTCAAAATT
TTATTTTTTAATCTTTGACCAAATGTTCTCGTGTTGCAAAAGATTTCTCG
ATTGTTATTGCGCACACTAAAAGAATATGATTTCAGGAACATTAAAACAA
TGTATTTTATGGAATTCGAAAGTCACCCTTAGACCTAGTACCATCATTTT
TCTATTGCGCTTTTCTTGTCACCGTAGATTGAGTGGAAGTGTTACAGTGA
CCATATTGTCGTTAGCAACAGTTGTGTATCTATGGAAACGATATCAATAA
AAAGGAGTCAGGTATTCAAGCTCTCTTCTAAGAAAAAAGGTATTTGCGAG
GTCTGACAAGTCTGAGGTAAAGTTAAATATATCTCGAAAATTTATCCATT
TTTTGCAATTCGGACTAACACTGTTGCCTTATCTTTTTCTTGAAACACGA
TTGGGCTGTTCCATTTGAAATCCATACAGGGGTGGACAAACCTTTTAAAG
CAAAAAAGTAATAATTCTTGAGAATATGTGGATACCCCTTAAAAATTATT
CTCCATATACCTTAGTGAGGGGGGAAGAACTAAATTCAGTCTTTTACCCC
CTGGAAATTCTTCTTAGGTTTGCCCTCCCTGGAAAAGTTCGCCTCCTACC
TGTATGGATATAAAATAGAATGTCCCATTTAAATCCGACTTAAATATCTG
GCCCTAGAGAGACTGAAAATGATTATCCAACCTTTATTTTTCAGAGGCTT
GGATCTGATCGTTTTGCCGGGGGAGACCAACAACGTTTGTTAATCGCCTT
GTCTTAGAATGGTAAGATGGTATCACTTCGTTCCTGTAAATGCTGTAGAA
ACTAGGCGATGTTCGATATTCGAAATTTAGTAAACTATACCAGCGCAACG
ATATATTGGTGGTTTCAAACGATATTGGTGAAAGACTTCCTCGATCTTGA
ACTTTGAGGATGATAGGCAATGATAACTGCATAATACTGCCTGATTTATA
AGAATTTTCGCTCCAAACTCAAAAGAATTTGTGCATGAGAGTATTAGCAA
CAGAGCAAGTGAAAAATGAATGGAAATTTGTATTTTTATACTAGCCCTGT
TACGTTGCATTTGGTGTCATAATGATATGAAACAAAATTGTAGTAGACAC
CAAATACACACGGATCTAGGGGAATTTTTATTCATGATTCATTAAGGACG
AAAATGACTTTCAAAAGCACTTTATTTGAATTTTGTTATGCTCTGAGAGG
TTTCGACCAGTTTGGCCAAATTAGACCATTTGGACCAATCTCATTTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056287-exon-scaffold_271-1575043694:33682..33727 | TCONS_00056287-exon-scaffold_271-1575043694:33682..33727 | Clytia hemisphaerica | exon |
| TCONS_00056287-exon-scaffold_271-1575043694:32137..32232 | TCONS_00056287-exon-scaffold_271-1575043694:32137..32232 | Clytia hemisphaerica | exon |
| TCONS_00056287-exon-scaffold_271-1575043694:31517..31600 | TCONS_00056287-exon-scaffold_271-1575043694:31517..31600 | Clytia hemisphaerica | exon |
| TCONS_00056287-exon-scaffold_271-1575043694:30528..31083 | TCONS_00056287-exon-scaffold_271-1575043694:30528..31083 | Clytia hemisphaerica | exon |
| TCONS_00056287-exon-scaffold_271-1510915933:33682..33727 | TCONS_00056287-exon-scaffold_271-1510915933:33682..33727 | Clytia hemisphaerica | exon |
| TCONS_00056287-exon-scaffold_271-1510915933:32137..32232 | TCONS_00056287-exon-scaffold_271-1510915933:32137..32232 | Clytia hemisphaerica | exon |
| TCONS_00056287-exon-scaffold_271-1510915933:31517..31600 | TCONS_00056287-exon-scaffold_271-1510915933:31517..31600 | Clytia hemisphaerica | exon |
| TCONS_00056287-exon-scaffold_271-1510915933:30528..31083 | TCONS_00056287-exon-scaffold_271-1510915933:30528..31083 | Clytia hemisphaerica | exon |
| TCONS_00056287-exon-scaffold_271-1491911889:33682..33727 | TCONS_00056287-exon-scaffold_271-1491911889:33682..33727 | Clytia hemisphaerica | exon |
| TCONS_00056287-exon-scaffold_271-1491911889:32137..32232 | TCONS_00056287-exon-scaffold_271-1491911889:32137..32232 | Clytia hemisphaerica | exon |
| TCONS_00056287-exon-scaffold_271-1491911889:31517..31600 | TCONS_00056287-exon-scaffold_271-1491911889:31517..31600 | Clytia hemisphaerica | exon |
| TCONS_00056287-exon-scaffold_271-1491911889:30528..31083 | TCONS_00056287-exon-scaffold_271-1491911889:30528..31083 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_271 | supercontig | scaffold_271:30528..33727 - |
Blast
The following BLAST results are available for this feature:
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