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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056292 ID=TCONS_00056292|Name=TCONS_00056292|organism=Clytia hemisphaerica|type=transcript|length=1308bp
TCAAGCTTTAACAGAAGATAGACTTCACCTtgtcaaaacttttttctttg
gttatttttctaaaagagaTTGCGCTGCAAAATGATGAAACACAGCTACC
CGATGATTAACAGCGTGAAAAAGAACGAACGACATCCAACGAACTCCGAA
TCGATCATTCACATTTTTGTAGGTTACAGAGACACCAGTCGTTGCTCGCG
AcgcaaaatcctcaaaaatcaacTAGAGGAGAGATGCGGTGAATCGAAGA
TCACAATGCAGTTAACCAAATGTATAAAAACATGCGACAAGATTGTCCCT
TATAAATGTTATACAAGAAAAACACTCAGTTTTGCTGAATTTTCATCTCT
GCATCCAGATGGAATTATTTACGATCCAGAGATTGAAATCGATTTGTGTA
CACCTGATTCATTAGGTGCATACATTTTACATAAGAAAGCGATCTGGCGA
CAATCGTATGTTTCAATCGATGATGCGACCGTTTCAAACGATAAAGTATC
CGATAAAGTGTGTTGTTTTATCGAACGAATCGATCACGAGGATTCGAACA
CACAAGTCCACGAACAAGCTAATTTCTTAATCGAGACATTTAAAGCACAT
CCCGTATCGGGGAAATATCTCCAAGGATTGATTGTGTATAAAAACACACA
AACGGATTACGAACGGAACCATTTCCCCGATTTGATCATCGAGTTTTCCA
TAATGCCGAAATCGGGGAAATATTTTTCAGCCTTACTGAAAGACTTTTGT
AAAGAATGCACAGCTGCTAGAGTTTACTTCGGTGTTTATGGTAGGAAGCA
GATTGTTAGCTCCCCAAAATGGGTCTGATGCACCACTGACCTTCATAAAC
CCTGGACGCAATTTCTCGATGCTGGTCAAACTAGATCGGTGTTTtttaaa
agtggtaccctaatggtaccACTACTTAATgctaattcttgatatgcgta
agtcatttttctagtgGAAACACCCttaaaaagccgggatttgatccctc
tctgttactaaaaatagaaacacggaggtcaaaaaccggcttttttcgag
tgcttccgttaaaaaatatgacgttaTCTTGaattacgcatatcaagaat
gaCAGCGTNtccgttaaaaaatatgacgtcatcttaaATTACGCATATCA
GGAATGACAGCATTTTAAATGGAAAAGTTTTCGAATTGTAAATTGACCCA
CATCGAGAAGTGCTACCATTATTGCATCActaaaaactccgatcaaagag
aGCGGATATAGCTTTAACTAGGGTAAGGTTGTTTAGCATTATTCTAACGT
CACCCTTG Run BLAST on NCBI protein sequence of TCONS_00056292-protein >TCONS_00056292-protein ID=TCONS_00056292-protein|Name=TCONS_00056292-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
MMKHSYPMINSVKKNERHPTNSESIIHIFVGYRDTSRCSRRKILKNQLEE
RCGESKITMQLTKCIKTCDKIVPYKCYTRKTLSFAEFSSLHPDGIIYDPE
IEIDLCTPDSLGAYILHKKAIWRQSYVSIDDATVSNDKVSDKVCCFIERI
DHEDSNTQVHEQANFLIETFKAHPVSGKYLQGLIVYKNTQTDYERNHFPD
LIIEFSIMPKSGKYFSALLKDFCKECTAARVYFGVYGRKQIVSSPKWV Run BLAST on NCBI transcript from alignment at scaffold_271:35829..37630- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056292 ID=TCONS_00056292|Name=TCONS_00056292|organism=Clytia hemisphaerica|type=transcript|length=1802bp|location=Sequence derived from alignment at scaffold_271:35829..37630- (Clytia hemisphaerica)
TCAAGCTTTAACAGAAGATAGACTTCACCTTGTCAAAACTTTTTTCTTTG
GTTATTTTTCTAAAAGAGATTGCGCTGCAAAATGATGAAACACAGCTACC
CGTAAGTGTTCTATATAAATTGCTTTTCGACAAAGCCCAGGTCGCCGTGT
CGACGTTTTTATTTGCGAATTTGTTTACAAGAGTGAGAAGTAAAGAACTG
AGTGGTCAAGAATCGACTACATACTTTTTTATCATTGAGATGTGATTTAA
AAGAACTTTCCGTCTGTCCATGAATCTTCATCATTGAAGCTTTGATCAAA
ACTTCGTCCTAAACTTCTAAATTTTGATGTATTTCAAATACCAAATATAC
CATGATAGCTGAGAAAAGTTACAATAATCACATTTTTGAACGTTTTTTCC
TGGAGGAGGAGCATCAGCTGTTTAAACCAGGGATTCGCGGTTCGAATCTT
CGCTCCTTCAAATGTTTCGTTCAGTTCATTGATAGCCGAGCCGGCTGGCT
GGCCGTGGACCCCGTGAAAACAATCGAAAGACTGCCTAAAAGCCCTAGAT
TACTGGGCTATCCACATTAAATATCGACTTTATCTACTTTCTTAGGATGA
TTAACAGCGTGAAAAAGAACGAACGACATCCAACGAACTCCGAATCGATC
ATTCACATTTTTGTAGGTTACAGAGACACCAGTCGTTGCTCGCGACGCAA
AATCCTCAAAAATCAACTAGAGGAGAGATGCGGTGAATCGAAGATCACAA
TGCAGTTAACCAAATGTATAAAAACATGCGACAAGATTGTCCCTTATAAA
TGTTATACAAGAAAAACACTCAGTTTTGCTGAATTTTCATCTCTGCATCC
AGATGGAATTATTTACGATCCAGAGATTGAAATCGATTTGTGTACACCTG
ATTCATTAGGTGCATACATTTTACATAAGAAAGCGATCTGGCGACAATCG
TATGTTTCAATCGATGATGCGACCGTTTCAAACGATAAAGTATCCGATAA
AGTGTGTTGTTTTATCGAACGAATCGATCACGAGGATTCGAACACACAAG
TCCACGAACAAGCTAATTTCTTAATCGAGACATTTAAAGCACATCCCGTA
TCGGGGAAATATCTCCAAGGATTGATTGTGTATAAAAACACACAAACGGA
TTACGAACGGAACCATTTCCCCGATTTGATCATCGAGTTTTCCATAATGC
CGAAATCGGGGAAATATTTTTCAGCCTTACTGAAAGACTTTTGTAAAGAA
TGCACAGCTGCTAGAGTTTACTTCGGTGTTTATGGTAGGAAGCAGATTGT
TAGCTCCCCAAAATGGGTCTGATGCACCACTGACCTTCATAAACCCTGGA
CGCAATTTCTCGATGCTGGTCAAACTAGATCGGTGTTTTTTAAAAGTGGT
ACCCTAATGGTACCACTACTTAATGCTAATTCTTGATATGCGTAAGTCAT
TTTTCTAGTGGAAACACCCTTAAAAAGCCGGGATTTGATCCCTCTCTGTT
ACTAAAAATAGAAACACGGAGGTCAAAAACCGGCTTTTTTCGAGTGCTTC
CGTTAAAAAATATGACGTTATCTTGAATTACGCATATCAAGAATGACAGC
GTNTCCGTTAAAAAATATGACGTCATCTTAAATTACGCATATCAGGAATG
ACAGCATTTTAAATGGAAAAGTTTTCGAATTGTAAATTGACCCACATCGA
GAAGTGCTACCATTATTGCATCACTAAAAACTCCGATCAAAGAGAGCGGA
TATAGCTTTAACTAGGGTAAGGTTGTTTAGCATTATTCTAACGTCACCCT
TG Coding sequence (CDS) from alignment at scaffold_271:35829..37630- >TCONS_00056292 ID=TCONS_00056292|Name=TCONS_00056292|organism=Clytia hemisphaerica|type=CDS|length=1494bp|location=Sequence derived from alignment at scaffold_271:35829..37630- (Clytia hemisphaerica)
GATGATTAACAGCGTGAAAAAGAACGAACGACATCCAACGAACTCCGAAT
CGATCATTCACATTTTTGTAGGTTACAGAGACACCAGTCGTTGCTCGCGA
CGCAAAATCCTCAAAAATCAACTAGAGGAGAGATGCGGTGAATCGAAGAT
CACAATGCAGTTAACCAAATGTATAAAAACATGCGACAAGATTGTCCCTT
ATAAATGTTATACAAGAAAAACACTCAGTTTTGCTGAATTTTCATCTCTG
CATCCAGATGGAATTATTTACGATCCAGAGATTGAAATCGATTTGTGTAC
ACCTGATTCATTAGGTGCATACATTTTACATAAGAAAGCGATCTGGCGAC
AATCGTATGTTTCAATCGATGATGCGACCGTTTCAAACGATAAAGTATCC
GATAAAGTGTGTTGTTTTATCGAACGAATCGATCACGAGGATTCGAACAC
ACAAGTCCACGAACAAGCTAATTTCTTAATCGAGACATTTAAAGCACATC
CCGTATCGGGGAAATATCTCCAAGGATTGATTGTGTATAAAAACACACAA
ACGGATTACGAACGGAACCATTTCCCCGATTTGATCATCGAGTTTTCCAT
AATGCCGAAATCGGGGAAATATTTTTCAGCCTTACTGAAAGACTTTTGTA
AAGAATGCACAGCTGCTAGAGTTTACTTCGGTGTTTATGGTAGGAAGCAG
ATTGTTAGCTCCCCAAAATGGGTCTGAATGATGAAACACAGCTACCCGAT
GATTAACAGCGTGAAAAAGAACGAACGACATCCAACGAACTCCGAATCGA
TCATTCACATTTTTGTAGGTTACAGAGACACCAGTCGTTGCTCGCGACGC
AAAATCCTCAAAAATCAACTAGAGGAGAGATGCGGTGAATCGAAGATCAC
AATGCAGTTAACCAAATGTATAAAAACATGCGACAAGATTGTCCCTTATA
AATGTTATACAAGAAAAACACTCAGTTTTGCTGAATTTTCATCTCTGCAT
CCAGATGGAATTATTTACGATCCAGAGATTGAAATCGATTTGTGTACACC
TGATTCATTAGGTGCATACATTTTACATAAGAAAGCGATCTGGCGACAAT
CGTATGTTTCAATCGATGATGCGACCGTTTCAAACGATAAAGTATCCGAT
AAAGTGTGTTGTTTTATCGAACGAATCGATCACGAGGATTCGAACACACA
AGTCCACGAACAAGCTAATTTCTTAATCGAGACATTTAAAGCACATCCCG
TATCGGGGAAATATCTCCAAGGATTGATTGTGTATAAAAACACACAAACG
GATTACGAACGGAACCATTTCCCCGATTTGATCATCGAGTTTTCCATAAT
GCCGAAATCGGGGAAATATTTTTCAGCCTTACTGAAAGACTTTTGTAAAG
AATGCACAGCTGCTAGAGTTTACTTCGGTGTTTATGGTAGGAAGCAGATT
GTTAGCTCCCCAAAATGGGTCTGAATGATGAAACACAGCTACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056292-exon-scaffold_271-1575043694:37530..37630 | TCONS_00056292-exon-scaffold_271-1575043694:37530..37630 | Clytia hemisphaerica | exon |
| TCONS_00056292-exon-scaffold_271-1575043694:35829..37035 | TCONS_00056292-exon-scaffold_271-1575043694:35829..37035 | Clytia hemisphaerica | exon |
| TCONS_00056292-exon-scaffold_271-1510915933:37530..37630 | TCONS_00056292-exon-scaffold_271-1510915933:37530..37630 | Clytia hemisphaerica | exon |
| TCONS_00056292-exon-scaffold_271-1510915933:35829..37035 | TCONS_00056292-exon-scaffold_271-1510915933:35829..37035 | Clytia hemisphaerica | exon |
| TCONS_00056292-exon-scaffold_271-1491911889:37530..37630 | TCONS_00056292-exon-scaffold_271-1491911889:37530..37630 | Clytia hemisphaerica | exon |
| TCONS_00056292-exon-scaffold_271-1491911889:35829..37035 | TCONS_00056292-exon-scaffold_271-1491911889:35829..37035 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_271 | supercontig | scaffold_271:35829..37630 - |
Blast
The following BLAST results are available for this feature:
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