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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056294 ID=TCONS_00056294|Name=TCONS_00056294|organism=Clytia hemisphaerica|type=transcript|length=1593bpRun BLAST on NCBI protein sequence of TCONS_00056294-protein >TCONS_00056294-protein ID=TCONS_00056294-protein|Name=TCONS_00056294-protein|organism=Clytia hemisphaerica|type=polypeptide|length=468bp MCDVTKENFNRIFPTIEWSIRNSEFIAIDGEFTGLSTSNTFEPTLFDTPKRun BLAST on NCBI transcript from alignment at scaffold_271:52268..77721- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056294 ID=TCONS_00056294|Name=TCONS_00056294|organism=Clytia hemisphaerica|type=transcript|length=25454bp|location=Sequence derived from alignment at scaffold_271:52268..77721- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_271:52268..77721- >TCONS_00056294 ID=TCONS_00056294|Name=TCONS_00056294|organism=Clytia hemisphaerica|type=CDS|length=23919bp|location=Sequence derived from alignment at scaffold_271:52268..77721- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056294 vs. Swiss-Prot (Human)
Match: PNDC1 (Poly(A)-specific ribonuclease PNLDC1 OS=Homo sapiens GN=PNLDC1 PE=1 SV=2) HSP 1 Score: 207.994 bits (528), Expect = 1.432e-59 Identity = 128/425 (30.12%), Postives = 225/425 (52.94%), Query Frame = 3
Query: 192 AIDGEFTGLST--SNTFEPTLFDTPKERYAKLKRSLSKFTLCQLGLACFVRSTKIENSYDTYVFNIYSCPASFGSIDSKFTCQASALKFLTEHHFDFNKFVKEGVPYLNRDQRVVLYEHHKAGMAIPSMLLKQIDDK-YVKPIIKLIEEFLVSDLKNDHLELPYIPNGIELYVVLRSIEKRFTNLECSFNEDDKIAITRVLDEKQKVV------FEPLY-EKILQDTVGVSRVLDLIAECKKPLIGHNFLGDLIMIYERFFHRLPQDYHQFKKRIHDNFHQIFDTKHIANNLRREFRDLNFPDFTNLQDLFTYFSRSEGFHHRIYTPKFILNDICKKYESGDHPHEAGFDAYSTGFIFLRMAHLLATKNIKLTDEKPLDLTDHFYVLKIFVDGINMSRAAVRHVNLNGDDPPSTLPERFIVRSRK 1436
+D EFTGL + S + +LFD P E Y K ++S+ +FT+CQ+GL+ F N Y + N Y P +FG +DS+F+ QAS+++FL ++ F++NKF+K G+PY+N +Q + G + ++ DK +K +I + +L + D + LP I G + + V + + N+ +D+ + + +V + + + E + E IL G S ++ + +KPL+GHN + DL+ ++E+FF LP+ Y QFK+ IH F + DTK + ++ ++++NFP +NL +++ + S+ + P+ + C+KY PHEA +DA+ G + L++AHLL K + + VL +V+ +N+ RA V +N +G D PS P I+ ++
Sbjct: 15 GLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQSVQQFTVCQIGLSVFSAIEGEANKYIAHSCNFYLFPTTFGILDSEFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQEKKIRHDILTG----NWRVRSSPDKDQIKVVIDEVTRWLELAKEGDWMTLPGI-TGFQAFEVQLVLRQALPNIWTVL-KDEGVVVKKVSKQHRWYLQNTSCDRESCWKENILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKSVTKDI---WKEMNFPRVSNLSEVYEVLN-SDLNPTKNSGPEIVHASRCEKYVETKCPHEAAYDAFLCGSVLLKVAHLLLQKIYHIDPVPESSFPQYLDVLAPYVNQVNLIRAGVPKINFSGPDYPSIRPPILILSVKR 429 The following BLAST results are available for this feature:
BLAST of TCONS_00056294 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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