TCONS_00056336 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056336
Unique NameTCONS_00056336
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length659

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056336 ID=TCONS_00056336|Name=TCONS_00056336|organism=Clytia hemisphaerica|type=transcript|length=659bp
AGACCAATTAATgtgaaaatgtaaaaacaaaataacTAGCTAAGTAAAAA
CAAACAATCTTATCAAAGCAAATCCTCTGCTCGCAATCTATTCCTATCCC
GTTCAAAACCACCAGGTCATAACTTAAAACCGCAAATGATCAACCATGTT
TGTACAAAAATCGATGTCAAAATAAGTTATCAAAACATTACAAAATACGT
TTTGTGAAATTTTGTTTAAGAAGGAAATTAGGATCACGACCTAAAGGCAT
AAAATGGAGTAAGTAATACTCAAGTTACCGTATGAAGGCCTTTATGCATA
ATTGTGATTGGTTGGAGCATTGTATTGCTTGCATCGACCAAATAATCAAT
TTTAGACTTTCACAAACATGCTTTGAAACAGATCAGTTCTACTGctcaaa
tatttttgttcacTTGTAGATTCTTCTATCTCCCTTGAAAACTCCAGACA
GTCAACTTTGGTTATACGTTTGACGTTTTAAGGACGTTCTAAGGATCACA
TTAAGTCAATCATATCGGCCACTGCCATAACAGCTACGTTCGTTACGAAC
ACGAATGTCCTATATCATTATCCATTGTCAATTTAAACCAATTAAAACTA
ACAAGCTCAAAATTATAAGTTAGGCGGAAACGAAAAATACGAAAAATACA
TTACCCCAT
Run BLAST on NCBI

transcript from alignment at scaffold_272:5101..5759

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056336 ID=TCONS_00056336|Name=TCONS_00056336|organism=Clytia hemisphaerica|type=transcript|length=659bp|location=Sequence derived from alignment at scaffold_272:5101..5759 (Clytia hemisphaerica)
ATGGGGTAATGTATTTTTCGTATTTTTCGTTTCCGCCTAACTTATAATTT
TGAGCTTGTTAGTTTTAATTGGTTTAAATTGACAATGGATAATGATATAG
GACATTCGTGTTCGTAACGAACGTAGCTGTTATGGCAGTGGCCGATATGA
TTGACTTAATGTGATCCTTAGAACGTCCTTAAAACGTCAAACGTATAACC
AAAGTTGACTGTCTGGAGTTTTCAAGGGAGATAGAAGAATCTACAAgtga
acaaaaatatttgagCAGTAGAACTGATCTGTTTCAAAGCATGTTTGTGA
AAGTCTAAAATTGATTATTTGGTCGATGCAAGCAATACAATGCTCCAACC
AATCACAATTATGCATAAAGGCCTTCATACGGTAACTTGAGTATTACTTA
CTCCATTTTATGCCTTTAGGTCGTGATCCTAATTTCCTTCTTAAACAAAA
TTTCACAAAACGTATTTTGTAATGTTTTGATAACTTATTTTGACATCGAT
TTTTGTACAAACATGGTTGATCATTTGCGGTTTTAAGTTATGACCTGGTG
GTTTTGAACGGGATAGGAATAGATTGCGAGCAGAGGATTTGCTTTGATAA
GATTGTTTGTTTTTACTTAGCTAgttattttgtttttacattttcacATT
AATTGGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035489XLOC_035489Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056336-exon-scaffold_272-1491911889:5101..5759TCONS_00056336-exon-scaffold_272-1491911889:5101..5759Clytia hemisphaericaexon
TCONS_00056336-exon-scaffold_272-1510915933:5101..5759TCONS_00056336-exon-scaffold_272-1510915933:5101..5759Clytia hemisphaericaexon
TCONS_00056336-exon-scaffold_272-1575043694:5101..5759TCONS_00056336-exon-scaffold_272-1575043694:5101..5759Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_272supercontigscaffold_272:5101..5759 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.867234	0.538166	0.44633	0.174666	0.637916	1.09219	0.912245	0.189785	0.132873	0.576046	0.399375	0.105013	0	0.163359	0.0895353	0.0480425	0.0591845	0.0606622	0.167616	0.175398	0.304906	0.446167	0.271187	0.57528	0	0.528814	0.216209	0.230744	0	0.178309
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056336 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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