TCONS_00056302 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056302
Unique NameTCONS_00056302
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056302 ID=TCONS_00056302|Name=TCONS_00056302|organism=Clytia hemisphaerica|type=transcript|length=2355bp
TCAACACAGTGTCTATgataatttataaattttggAGATTTTGGAGATGA
ATGTGTTATGATAAAATAGATTTGAACAAACAATGGCAATAATAACAGAA
GAAATAACAGAGACACAACTAATACATGGTAATGGCACTGCTTTGCCTGA
GAAAAGGAATGGTTATCATAAAATAGCAAATGGAAGAAATGGCTTCAATA
ATAATAGAGAACAGAAACCAGCACAAAGAGACAAACCTAAAAAACAACAA
TTATTTGAAGAGACTCCACTTATTGTTGCTGTTATAACTTATATTGGATA
TGGTGTTTTGGTTGTATTCGGTTATTTTAGAGATTTTCTTAGGTTGTACA
AATTTGAGAAAACCAAAGCTGCAAAAGAAAAGGGTAGAATGGGGTTTGTT
CCATTATATGCAGACTTTGAATCATTTTATACGCGTAACCTTTATACAAG
AATCAGAGACTGCTGGAACCGTCCAATATGCAGTGTAGCGGGTGCAGAAG
TAACACTTCTTGACAGAGACAGTGAAGACTATAATTGGAACTTCAGcATC
ACTGGTAAAACCACTCGTGTCATAAACATGGGCTCATACAATTACCTTGG
CTTTGGAGAGTGCACTGGTCCTTGCACAGATGCAGCAGAAGATACTATCA
CTGGTTGTGGAGTTGGAAGTGCAAGCACCAGAAGTGAAACTGGTATGCAT
GAAAAGCAAGAAGAACTAGAGAACATTGTTGCCCGTTTTGTACGTAAAGA
AGCTGCAGTCTGTTTCGGAATGGGCTTTGCCACCAATTCAACTTGTATTC
CATCAATTATTGGACCTGGGTGTTGCATCATCAGTGATGAACTGAATCAC
GCCTCTCTTGTACTTGGAACACGACTGTCGGGAGCTAAAGTCTATGTTTT
CAAACACAATGACATGGAAGATCTTGAGAGGATTTTGAGAACTTGTATAG
TTCAAGGACAACCACGGACACACAGACCATGGAAAAGAATGATCATTGTT
GTGGAAGGTATTTACAGCATGGAAGGATCTATCGTCAAATTACCAGAAAT
TATTGAACTCAAGAAAAAGTACAAGgcaTATTTATATTTGGATGAGGCAC
ATAGCATTGGTGCACTTGGACCTAATGGACGTGGTGTTGTCGATTACTTT
GGATTAGATACAACAGATATTGATATTATGATGGGTACTTTCACCAAAAG
CTTTGGAGCTTCTGGTGGTTACATTGCCGCTGAAAAACATCTCGTAGACC
ATATCCGAGCCTCATCATACAGCTCAGCATATGCAGCAACTATGGCACCA
ACAGTTATGCAACAAGTTATCTCATCAATGAAAATCATCATGGGTGAAGA
TGGAACAAACGAAGGAGCAAGACGTTTGAAACAACTCAAAGATAATATTA
TAATGTTCAGACAGAAACTAGAAGACAAAGGATTCATCATCTATGGCCAT
GAAGCATCTCCTGTTATCCCATTGTTGTTATACATGCCTGCTAAAATTGC
TGCATTCAGTCGTGAAATGTTGAAACGTGGTGTTGGTGTAGTCGTCGTCG
GATTTCCAGCAACTCCTATTATTGAATCTCGATCTAGATTTTGTTTATCT
GCTGCACATACACCTGAAATGCTCAACGAGGTGTTAGATGCATTAGATGA
CGTTGGTAACATTCTACAGTTGAAATACTCAAGACTGAGTCCCGAACAAC
CTATTGAACCACAACAAGAGAAAGCTAAAGACGAGTAAAGCTTTCACCCT
CAAAGAATGGACCGACAGCACTTACTCATCACTCAATTGCTTTGCATTGA
ATGGTTAAGTCTGTGTTGTTGGTATTTTTTAAAGTTCTAAACTCTCTTTT
CTTTTCGTCATATTCTTATCGCTTCGCAAACTTTGAATCTCCGTCgggtt
tttatataagaaccttTTGCGTAATCTCAGAATAGTGAGTCTTATTTCTA
AAGCTGGCATCTAAAACAGCAAAATATTAGCAATATTTTAAAGACGATTT
CTATTCCTCTTGTACTTTATTCTGCTTTATTTCTGACTGGCTTAAAATCT
AATCATCAAAAATGTTGTATATACTATTTTCTTGTAgtttataataaata
aaaattctgGATATTATATACTATCTATaactatgattttttttttcgtt
ataccaaaacatttttagtaccttgttttttttagtttcaaatTATTTAG
CATCAAAATTATAGTATTACTGTCAATATAAAATTTACTCCGGATAAAAT
GACATGTCTGGTCTTTTTTGGCAGATATGTACCGTATAAAAACCTAGTAT
AAAagccttttctttttttctcatgtTTCTTACTTTAACTTAAGTCAAGA
ACTCG
Run BLAST on NCBI

transcript from alignment at scaffold_272:7162..20212+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056302 ID=TCONS_00056302|Name=TCONS_00056302|organism=Clytia hemisphaerica|type=transcript|length=13051bp|location=Sequence derived from alignment at scaffold_272:7162..20212+ (Clytia hemisphaerica)
TCAACACAGTGTCTATgataatttataaattttggAGATTTTGGAGATGA
ATGTGTAAGTATAAACTTGATATTCACTTTGTTTTGAATGAAATGTGAGT
TCTATAAAGCGTATGAATTGAAAGTGAGCACCACAAATTTTAGAGCAAGG
TTGTCAGGGTGATAGCTACTACATGTAGGCAAACAAAATATCATCCTCCA
GGATGCAAGACCAAGTTCAATTTGTCAATCTGCAGACCTAGACTTAGTTA
TAGTTTGGTTACCATATAGCTAACTTCATTCAAATATAAGCGACCCTTTA
gtggggggggtttcagggggtacccgattccgcaataccgccaatttttt
ctccaatttccgtcaaaccgtcttaaattgaaccaaaattccgtcaccga
aaattcctttgaaattcaatatttttgtcgaaaattccgcaaattttaag
aatatcttttaccaattccgaaattccgcaaatttttttgctaaattccg
tttttccgcactaaaattatCTAATTTttcgtctccgtcagagaacccaa
tttccgtaattccgtctaaattttcgccaaattccgccactccgtccgaa
aaaagggccgattccgctccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcctttcgc
tacaccggacgtaataagtccggtgtcagtccggtgttgcatacagggaa
ttttggacgccggacatttatgaaacaaaaaattacgaaaaaccggacgc
accggacttgtCATGtgcggtgttttgattgtccggtggaaaaaaatatc
cttctccgacaccggacatccgacttttgtaaaaaaaattctcattttac
accggactttcgcgtgtccggtgttcgttaagtccggtgcgtcggcaggg
tccttcgGTCGGTCGGTGGTAAAGATtttcgggtttccatttttccatcc
atttttggagtacattcttggaggaaactgccagccagcctgCAGCCAAA
ACAACTgcgtgtaatgggtggtttaaaattatgacctttgaacactgtga
aagggtcacgtgcgtttgcgtagggtaaaatggagaaatgcgaaaatcaa
ctttggcaaaaaatttttgaaaaatgaccctacaagttttgactatatct
ttttattccatgaagagattactttcaaataaaaaatgtactaACAATGA
ATgtgtaagctttctagaaatccaaacataaattgcatagcttttaccaa
aaaatagtgCTATTTTTACTtccactttaggatcagaaacagtcaaaaac
cagctttttccaattttcttcgagttacaggaattaattccttgtttgtt
ttgatctgaaattttcagtaggggtggccaacatggttcctttgctcata
tcaggggggcccgagacgggggtaagagaattaaagtttttaagtaaaat
cttaataatagattgtcccagccttatccctctttcaaTAAAGCTTCCTA
Tagcttttgtccttcagaaaaaccaaaaatattggccttaattgcttgct
ttcagttcctgtagccagtagtgtgaccccctgtatttctattttgtgaC
CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNt
agagaaagcgaaagtgaaatcgcgcgatctgattggatgaaaaaagaccg
cgggagctggaaacaaatggaattctctagaattctcattcgaAAAACAA
GATGGgggcgagaaaagcacgtcttttgctttggacgaaaggttgtaaat
tctggtcgattttaaggttttatcttatctcatctcatttactgtaatta
gtagaggcttcttcaatgtttggggatggtaagtctgtaaaagttatttg
tttttctgtggaagaaagtgtttaaaaaagcattttttgtgctcaaggtt
tatttttcttcgcaaatttttgtcttcaatcttaaatagacgaacgagta
tttgactgatagTTATggttttttcacagaacatagtaaaactattcagg
aacttagacctttttacagaatttcaaaaaatctgttagttctggagata
tattgaaaagtttggGCATGAGTAGttcgcgttcgtgtttcgcgttccca
aaccaaacgcatgTGGGGTGGACatgccaaaattttcccctcaattttta
gaaaccaaactaatcttatttgaaagtccttacctttgtgagaagaatga
ggggtcatttattagaaatggttaagtattcccaaagttattccattttc
aaaacacaaaaaaatcaccttttcaaagaattgcCTCCTTAcgtacacca
cgccagcaagaaataattttcggaagcaccaaaatccgcgccaaaaatgg
cagatgaaatctagtcttccgtgtagcggggtgtggggagttttgccggt
gcggtctgaaaatcggcccgatgactgttaaacttaagcttatcgctaat
gagctggaaatgatagctaaaaacaactttcaccactagaaagatgaaat
cctcagctttcagatggtgtatggtgcttaaaagaaaaaatctgcaatct
tgtgaaaaaacctcaatttcttcttatttttcgaaattccagacggcctg
tagattttcaaataaagcactttgtgatagattgtagccttaTCCTAcac
tgggtttactaaaaaaaattacgattgcaaagatgaaccagctcaacaGT
GACAGCCATTTGTTCAATGTGtgtcgagaattttccggtgccgtggtcag
cgctaaatcgtgttttcaccttgacgtcgaaaaacatgaatatcttttga
aagaaaatagatacctagATTCCATttgttttacttgtttccctgataat
tcctgattgatttaaaaaaaagaatgaacagatttggatgatttaaaggt
aagtactaatgcattgaagttcatttttgtaaattcttcctcgttccgcg
caaaaaatcccgacgagtgcgcaccctaactgtgacctccgaccccgaaa
tggcgcatgtaatgataaacaaagtcaaaatgctgcgaatgtgaaatcgc
tcgcaaaaaatcagcaataataaaatttttgaacgaaggaaaggtcattg
acagaaaaagtccgacaaatttaccgactcaccgactcaattctactcaa
ttttcgagagtcggtcgggcgacgcgaaacaaagatatttgtgattacCG
CCTTAAGGGACACTTGTATTGTAACCAGAcccaatcaatcgaacttgtcg
aatcaatcgaacaatCGAGCTAATATCATCAAACTCCATCGAAcaattaa
agttcgattaaagaatttaatcaACTCATAGGGTCCCCCTTTACTAACAG
TTTTTTCAAGgtcagaaaatcaaatatctgatgaCCAACAGATTCAATGt
gaaaagtaaataaagaaaatgggtttatttgttaagtttcaaTTATCGGG
TGttgagaaatggcattttttaaAAGCTGAAACCAACATTTTGGGTGTTT
TGCAATGATGTCAACATTTTCctaggagcattttcagaaagaaTCATTCT
CAGGGCTAGATAGCCCTGAGTTTGtcgtatccaaaaatggtatggtttgt
aaTGTTTTAATGTCTAGATCTggagataattcatttttaaggtgggtaaa
tatgctgaaTTAAACTGCTggctcagcaaaaaatatcaataattttcaat
atttaaatcaaaatatctcgagatctagacattgaaatttgacaaacaat
accatttttggatatcatattattaggagcataatatgaaaaatttgccc
tgatctaaggggtgcccaacaaaaacctgttttaaggtcTTATCTGAGTC
TGGTCTAGGGAGAGGCAAAGAGCACGGTGGATGCGGTTAATGAGATCCGG
TATTAGAATGGTGGTGCTTCTCTTGTTTTGAAAAGCTATGACTTACACta
atattttactttatatCCGTTCCTTACTCCAATACACCAAAAGTAATTAC
TGCCTCACTCCGAATATATTGCACCATTTATAAACTGATCATGACATCAT
TTTATTTAGTTATTTTATTTCTAAATATATTGTTTCTTGTAGGTTATGAT
AAAATAGATTTGAACAAACAATGGCAATAATAACAGAAGAAATAACAGAG
ACACAACTAATACATGGTAATGGCACTGCTTTGCCTGAGAAAAGGAATGG
TTATCATAAAATAGCAAATGGAAGAAATGGCTTCAATAATAATAGAGAAC
AGAAACCAGCACAAAGAGACAAACCTAAAAAACAACAATTATTTGAAGAG
ACTCCACTTATTGTTGCTGTTATAACTTATATTGGATATGGTGTTTTGGT
TGTATTCGGTTATTTTAGAGATTTTCTTAGGTTGTACAAATTTGAGAAAA
CCAAAGCTGCAAAAGAAAAGGGTAGAATGGTAAGGCATTGTATTTCACTT
TTAAATAAGATAACATTATACAGATTAAAAATATGTACCTGAGGAATGTA
CTTGGAGATTACAATACTGGAAACATACAGCTTTAGATATAGGCAGATAT
AGGCTGTATTTTCATTCCAGAAAAAGTTTCAGTTTAGTATCATCCAAAGA
TTGTTGTTGATTTATGTTATTATTACATAATCAGACAGAATCATGTGTCG
AAAATTCAATCAACTCGAAATGTTCTTATTATCAATATATGACTGACTTT
TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNATTGGATATGGTGTTTTGGTTGTATTCGGTTATTTTAGAGATTTTC
TTAGGTTGTACAAATTTGAGAAAACCAAAGCTGCAAAAGAAAAGGGTAGA
ATGGTAAGGCATTGTATTTCACTTTTAAATAAGATAACATATACAgatta
aaaatatgtactttgaGATTGCAATACTGGAAACATACAGCTTTAGATAT
AGGCAGATATAGGCTGTATTTTCATTCCAGAAAAAGTTTCAGTTTAGTAT
CATCCAAAGATTGTTGTTGATTTATGTTATTATTACATAATCAGACAGAA
TCATGTGTCGAAAATTCAATCAACTCGAAATGTTCTTATTATCAATATAT
GActgactttttttaattcttagGGGTTTGTTCCATTATATGCAGACTTT
GAATCATTTTATACGCGTAACCTTTATACAAGAATCAGAGACTGCTGGAA
CCGTCCAATATGCAGTGTAGCGGGTGCAGAAGTAACACTTCTTGACAGAG
ACAGTGAAGACTATAATTGGAACTTCAGgtgtgttttttattttataaat
caCTGATTAAAAAGGTAAACTTTCAAAGGTGGTTCCTGTCAGCATATTGT
ACATCTGCAACTTGGTTTCATCCCAAAAACAAAGTCAGAAATAAGATGAg
gcgagattcattgtttctgacattgttgtaaacttggcaatccttcatca
aatgacaagatttttcgatcagtGCTTTCTTCAAAGTGAACTCTATTTCT
TGATACTTTTCTCTAAAATTCTCCAGCAACGTTTAGTCAACGAATTGAGt
ttgaaattgtgtgtgcttataaagaacctttcattttctggcttaaGATC
AGAGAGCATTCCTAATTAAAGTATTACAAAGTGAATTCGTACTCAAAACT
TTTCTCCTTCAGGCATCAGGGAGATGCAAGCAATAGCTTGACTGCTGGTA
TCATGTACCAAAATTGatagtttttaggatttctGGCAGACTTGATGAAT
TAAcaacaagaagcccagagggcatgaaggcccagcgaataaaaatAAGA
ACTGAACAAGACTTAAGTAGTAGAGGGTATTTGAACCTGGAGTTGCTAAT
ACAAGCCAtagacgccttagaccactcggctaTCTCTTATTGGCAACAAA
gagaaataattcaaaatatttaatcttattccctaacacgtgaacaactg
aactgttcacatgatagagaaatgtaaaaacaacttttttaaaagaacat
cttcctaaaaagaaaaaggtttgttACGGTTATTTCTGTGTAAAtcacat
tgtttttcttaaaacgtaCTACATCTGCAGACATCTGTTATATTCTTATA
GTTATAATAGTTAAAATAGTTAAtcgtattttctccttttatgtttttaa
ccaataaagacgattgcaattgttttttattctgtcaatcatgttctaac
agccaatcaaatcttTCACAATATGGACTAGTAAGATGGgttacacacac
acacactaACAGACACGGGCACagtgctaatgaaaggcccgtACGCtaag
cgctgggccaaaaacaAAGTTTCAAGTTAAGTCCTGACTGCATCTTTTGG
AGAGGTTCATACCATGTGATACCTTGTCTTATTTTGCAAAACTTGTCAAG
GACCTTGTAGGAAGCGTCAGAAGCGTAGGAAGAGTCCACCAAAAGTTCTT
TGATTTAAAGAAAAGCTGAATTTGATTCAACTAGCgactttattcttttt
ttagcATCACTGGTAAAACCACTCGTGTCATANAGTTTCATCCCAAAAAA
CAAAGTCAGAAATAAGATGAggcgagattcattgtttctgacattgttgt
aaacttggcaatccttcatcaaatgacaagatttttcgatcagtGCTTTC
TTCAAAGTGAACTCTATTTCTTGATACTTTTCTCTAAAATTCTCCAGCAA
CGTTTAGTCAACGAATTGAGtttgaaattgtgtgtgcttataaagaacct
TTCATTTTCTGGNTGTCAACGAATTGAGTTTGAAATTGTGTGCTTATATA
AAGAacctttcattttctggcttaaGATCAGAGAGCATTCCTAATTAGAG
CATTACAAAGTGAATTCGTACTCGAAACTTTTCTCCTTCAGGCATCAGGG
AGATGCAAGCAACAACTTGATTGCTGGTATCATGTACCAAAATTGATAGT
TTTTAGGATTCTGGCAGACTTGATGAATTAAcaacaagaagcccagaggg
catgaaggcccagcgaataaaaatAAGAACTGAACAAGACTTAAGTAGTA
GAGGGTATTTGAACCTGGAGTTGCTAATACAAGCCAtagacgccttagac
cactcggctaTCTCTTATTGGCAACAAAgagaaataattcaaaatattta
atcttattccctaacacgtgaacaactgaactgttcacatgatagagaaa
tgtaaaaacaacttttttaaaagaacatcttcctaaaaagaaaaaggttt
gttACGGTTATTTCTGTGTAAAtcacattgtttttcttaaaacgtaCTAC
ATCTGCAGACATCTGTTATATTCTTATAGTTATAATAGTTAAAATAGTTA
Atcgtattttctccttttatgtttttaaccaataaagacgattgcaattg
ttttttattctgtcaatcatgttctaacagccaatcaaatcttTCACAAT
ATGGACTAGTAAGATGGgttacacacacacacactaACAGACACGGGCAC
agtgctaatgaaaggcccgtACGCtaagcgctgggccaaaaacaAAGTTT
CAAGTTAAGTCCTGACTGCATCTTTTGGAGAGGTTCATACCATGTGATAC
CTTGTCTTATTTTGCAAAACTTGTCAAGGACCTTGTAGGAAGCGTCAGAA
GCGTAGGAAGAGTCCACCAAAAGTTCTTTGATTTAAAGAAAAGCTGAATT
TGATTCAACTAGCgactttattctttttttagcATCACTGGTAAAACCAC
TCGTGTCATAAACATGGGCTCATACAATTACCTTGGCTTTGGAGAGTGCA
CTGGTCCTTGCACAGATGCAGCAGAAGATACTATCACTGGTTGTGGAGTT
GGAAGTGCAAGCACCAGAAGTGAAACTGgtaaagaaaaaatgtttttcaa
tattGATGGGATTTTCAAAATCTGCATATTTATTTGTAAATGAATATTAG
TAAATTACAGCAATCTTCTTGCAAGCTTCTGAGTTTATtgtatgaaaaat
ctttttgtattATCTTGTGGGTTTAGATCGATTTAGTTAAAGGTCAAAGg
tactttttcaatatttttcatatcaaAAGGCAAAAGAAATCTTTCCAATT
ATAAGTACTTACAGTAAGAATTAGAATTGTCTCccctaatattttttcat
tgattGAAGAATCATTAACAACTATTTTTATGCTACAGGTATGCATGAAA
AGCAAGAAGAACTAGAGAACATTGTTGCCCGTTTTGTACGTAAAGAAGCT
GCAGTCTGTTTCGGAATGGGCTTTGCCACCAATTCAACTTGTATTCCATC
AATTATTGGACCTGGGTGTTGCATCATCAGTGATGAACTGAATCACGCCT
CTCTTGTACTTGGAACACGACTGTCGGGAGCTAAAGTCTATGTTTTCAAA
CACAATGGTATGAAGAAAAGATCATGTCTTACTATTTGTTACATGCAAAT
CTCTAATCTTACTGGGGTTATTATAGCTTTGATTGGTACAatctttttca
attgttttttatgTTGTATACTGgactttttacaaaattgagcaaaaatg
gCCTCCAATCAGCCCAAAATAAAACAGTTTAAACATAATTTTTGTATATA
GACATGGAAGATCTTGAGAGGATTTTGAGAACTTGTATAGTTCAAGGACA
ACCACGGACACACAGACCATGGAAAAGAATGATCATTGTTGTGGAAGGTA
TTTACAGCATGGAAGGATCTATCGTCAAATTACCAGAAATTATTGAACTC
AAGAAAAAGTACAAGGTAAGTTATTAGGAGATTTGACAGTTGATTAcctg
ctttcattttcaaattttgcatcattgaaatttttgcatcattaaaattt
tcaattatgaAAGGATGCCAAGACAGATTCTATAGCAAAATTCTATACCA
AGTTTTATGGGAATGATATATTATATAAAGAGCTAATCAATGCATCATTT
CTTGTGTGTTTTCTGGATCCGAAATATGTCCCTACTGGGTTACTCACTAT
TTactaaatttctctttttttgatTCAATACAGGCTGTAGAAATTATATT
CAATCATAACTTTACCACATTAAAAAAacttaatatttcttttttttcag
gcaTATTTATATTTGGATGAGGCACATAGCATTGGTGCACTTGGACCTAA
TGGACGTGGTGTTGTCGATTACTTTGGATTAGATACAACAGATATTGATA
TTATGATGGGTACTTTCACCAAAAGCTTTGGAGCTTCTGGTGGTTACATT
GCCGCTGAAAAAGTAAGTCTTATTCTTGATTAAAGTCAATgatcttacat
tttttttgcgaGTACCTCTTATTTAATCAAATGTTTTTTAGCTGTCAATC
TCAAGACAGAAACATAACACAGCGTAAAGTTTAAACAGCCACCAAGCAAA
TTATGTTTTGTCTGTTGATGATTCTTGTAAATTATGAATTTTTCACAACC
TCTCACTTTTTTAGCATCTCGTAGACCATATCCGAGCCTCATCATACAGC
TCAGCATATGCAGCAACTATGGCACCAACAGTTATGCAACAAGTTATCTC
ATCAATGAAAATCATCATGGGTGAAGATGGAACAAACGAAGGTTTCTAAT
AATTATTGATTCTCATAACTTGTATCTAAGTTCAATCAATAAACCAACAA
TAAAACTCTCAAATTACACATTCAATTTGTGGAGAAAGCTCAACTCAACT
TTTCCATCAAAGTGAAAGTGGCTATCAAGCTTCTTGCAGTAACTATCCTT
TCGACTGTATTAATTGATAGGAGCGAAAGTTTTTGCTCGCGTTTTTGATT
TCCGATGTGTAGAAAATTCCCAAATAGAGCTCAAAATTCTaaattcatga
ttttgacaatTGTGCTAGAATTCTGAGGGGAAAGGTTATGAGCATtcaat
catttttcttataattttcagGAGCAAGACGTTTGAAACAACTCAAAGAT
AATATTATGTAAGTTCATAAATCATTTTGAACTCGAAAAATAAGCAAATG
TTCTACAATTTATTTACAACCATACAGTTATTTAAACACTTTTCATTGCA
GTTGCATTTATATTGTGATTTTACTTTTACAGAATGTTCAGACAGAAACT
AGAAGACAAAGGATTCATCATCTATGGCCATGAAGCATCTCCTGTTATCC
CATTGTTGTTATACATGCCTGCTAAAATTGCGTAAGAAAGgcatttgtaa
attttgaaaataaaaatgataacTATTTAATAAAACTTACCTAAACTTCT
CATATTCTAGCTAGGTCAGGCTAGGTTCAAAAAGTGTCTTTGCGGTCACG
AATTTctaccaaatttaaaaattttcaactaAAGATTTTGTGCTAAAAAT
TAAAGAAGTATACCCCCATTGAGTTTGAAACTCCAAAGAATCTACAGATG
GATCTACAatttttctcaagcaagaaaaagtgaagccttaaattTGCCCC
GCTTTTAgaaattatgtttgaaaaacacgCAGGTCACTCACGTGTTCTAG
ATGGGAAATAATTGGCTTTATTTCCCAGGGAAATAATTGGCTTTATTTCC
CAGCCAGGAGTTTCAGATATCGCCCCTttggggctttgaaatcaaatcaA
TGGTATGCCCCACTAAAGAGTAATCatttaatcaaaataatttcatttta
ccTTTCCAGTGCATTCAGTCGTGAAATGTTGAAACGTGGTGTTGGTGTAG
TCGTCGTCGGATTTCCAGCAACTCCTATTATTGAATCTCGATCTAGATTT
TGTTTATCTGCTGCACATACACCTGAAATGCTCAACGAGGTACGTGGTAT
TTATTTGAGGTTTGATGAACATCTCATTACATCTTATAAGGAAGCCCCTG
AATCACTTATCAACTATTCAATTCATTGTTTTTTCATAAGTCCACAATAC
ATTGCATTGGCAAACAATATTCTACAGCGGACTCTAATTTTCTAAGTAAA
CAATATTTGCTCTTTTTTGGATAAAAGTTTCTttccctatattgttggaa
tacagttgacgctctctaataagggagcttatcgaataagggagcgtcgt
ttatgagagtttctagtTGACggggtttttaaatttcatcgaataaggga
gcctatcgaatagtagaacgtcgaattagagagcgtcaactgtattgcCA
ATCGAGCTGGCAATTTATGGACGCCTTGCCAATAATAAATGCCTTTTTAA
TTTATCCCTTTATAAGAATTATTGAAAATGCTAAAAGCTCTATTGTCCCA
GGAACATGCGTGTGaacagcgtgtcttttgggtatttccctcactttttg
tccaatgaaacaaaaaaagaaaccatgggacactcACTTtatttcttgtg
ttggtgggatagagcatgttgcattgcaccaacgcgaaaaaaatttcgtg
tccccaagccttaaaacTTGGTTCTTGCTATTTTTATTCAAAGTGAAACA
ACTGATAATTTCAAATCATGTTTCAGGTGTTAGATGCATTAGATGACGTT
GGTAACATTCTACAGTTGAAATACTCAAGACTGAGTCCCGAACAACCTAT
TGAACCACAACAAGAGAAAGCTAAAGACGAGTAAAGCTTTCACCCTCAAA
GAATGGACCGACAGCACTTACTCATCACTCAATTGCTTTGCATTGAATGG
TTAAGTCTGTGTTGTTGGTATTTTTTAAAGTTCTAAACTCTCTTTTCTTT
TCGTCATATTCTTATCGCTTCGCAAACTTTGAATCTCCGTCgggttttta
tataagaaccttTTGCGTAATCTCAGAATAGTGAGTCTTATTTCTAAAGC
TGGCATCTAAAACAGCAAAATATTAGCAATATTTTAAAGACGATTTCTAT
TCCTCTTGTACTTTATTCTGCTTTATTTCTGACTGGCTTAAAATCTAATC
ATCAAAAATGTTGTATATACTATTTTCTTGTAgtttataataaataaaaa
ttctgGATATTATATACTATCTATaactatgattttttttttcgttatac
caaaacatttttagtaccttgttttttttagtttcaaatTATTTAGCATC
AAAATTATAGTATTACTGTCAATATAAAATTTACTCCGGATAAAATGACA
TGTCTGGTCTTTTTTGGCAGATATGTACCGTATAAAAACCTAGTATAAAa
gccttttctttttttctcatgtTTCTTACTTTAACTTAAGTCAAGAACTC
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035467XLOC_035467Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056302-exon-scaffold_272-1491911889:7162..7215TCONS_00056302-exon-scaffold_272-1491911889:7162..7215Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1510915933:7162..7215TCONS_00056302-exon-scaffold_272-1510915933:7162..7215Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1575043694:7162..7215TCONS_00056302-exon-scaffold_272-1575043694:7162..7215Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1491911889:12004..12340TCONS_00056302-exon-scaffold_272-1491911889:12004..12340Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1510915933:12004..12340TCONS_00056302-exon-scaffold_272-1510915933:12004..12340Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1575043694:12004..12340TCONS_00056302-exon-scaffold_272-1575043694:12004..12340Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1491911889:13135..13289TCONS_00056302-exon-scaffold_272-1491911889:13135..13289Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1510915933:13135..13289TCONS_00056302-exon-scaffold_272-1510915933:13135..13289Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1575043694:13135..13289TCONS_00056302-exon-scaffold_272-1575043694:13135..13289Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1491911889:15744..15889TCONS_00056302-exon-scaffold_272-1491911889:15744..15889Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1510915933:15744..15889TCONS_00056302-exon-scaffold_272-1510915933:15744..15889Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1575043694:15744..15889TCONS_00056302-exon-scaffold_272-1575043694:15744..15889Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1491911889:16200..16418TCONS_00056302-exon-scaffold_272-1491911889:16200..16418Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1510915933:16200..16418TCONS_00056302-exon-scaffold_272-1510915933:16200..16418Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1575043694:16200..16418TCONS_00056302-exon-scaffold_272-1575043694:16200..16418Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1491911889:16613..16776TCONS_00056302-exon-scaffold_272-1491911889:16613..16776Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1510915933:16613..16776TCONS_00056302-exon-scaffold_272-1510915933:16613..16776Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1575043694:16613..16776TCONS_00056302-exon-scaffold_272-1575043694:16613..16776Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1491911889:17112..17273TCONS_00056302-exon-scaffold_272-1491911889:17112..17273Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1510915933:17112..17273TCONS_00056302-exon-scaffold_272-1510915933:17112..17273Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1575043694:17112..17273TCONS_00056302-exon-scaffold_272-1575043694:17112..17273Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1491911889:17476..17602TCONS_00056302-exon-scaffold_272-1491911889:17476..17602Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1510915933:17476..17602TCONS_00056302-exon-scaffold_272-1510915933:17476..17602Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1575043694:17476..17602TCONS_00056302-exon-scaffold_272-1575043694:17476..17602Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1491911889:17933..17969TCONS_00056302-exon-scaffold_272-1491911889:17933..17969Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1510915933:17933..17969TCONS_00056302-exon-scaffold_272-1510915933:17933..17969Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1575043694:17933..17969TCONS_00056302-exon-scaffold_272-1575043694:17933..17969Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1491911889:18094..18192TCONS_00056302-exon-scaffold_272-1491911889:18094..18192Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1510915933:18094..18192TCONS_00056302-exon-scaffold_272-1510915933:18094..18192Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1575043694:18094..18192TCONS_00056302-exon-scaffold_272-1575043694:18094..18192Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1491911889:18671..18800TCONS_00056302-exon-scaffold_272-1491911889:18671..18800Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1510915933:18671..18800TCONS_00056302-exon-scaffold_272-1510915933:18671..18800Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1575043694:18671..18800TCONS_00056302-exon-scaffold_272-1575043694:18671..18800Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1491911889:19488..20212TCONS_00056302-exon-scaffold_272-1491911889:19488..20212Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1510915933:19488..20212TCONS_00056302-exon-scaffold_272-1510915933:19488..20212Clytia hemisphaericaexon
TCONS_00056302-exon-scaffold_272-1575043694:19488..20212TCONS_00056302-exon-scaffold_272-1575043694:19488..20212Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_272supercontigscaffold_272:7162..20212 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
124.466	124.825	66.7972	54.1802	133.999	101.231	120.927	125.065	134.323	107.571	190.632	135.987	196.843	221.023	104.545	107.994	105.543	140.983	152.821	110.088	215.345	213.297	120.916	142.848	218.945	189.597	63.0776	85.1968	115.402	104.323
Blast
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BLAST of TCONS_00056302 vs. Swiss-Prot (Human)
Match: SPTC2 (Serine palmitoyltransferase 2 OS=Homo sapiens GN=SPTLC2 PE=1 SV=1)

HSP 1 Score: 602.053 bits (1551), Expect = 0.000e+0
Identity = 311/482 (64.52%), Postives = 387/482 (80.29%), Query Frame = 2 
Query:  245 QQLFEETPLIVAVITYIGYGVLVVFGYFRDFLRLYKFEKTKAAKEKG-RMGFVPLYADFESFYTRNLYTRIRDCWNRPICSVAGAEVTLLDRDSEDYNWNFSITGKTTR-VINMGSYNYLGFGECTGPCTDAAEDTITGCGVGSASTRSETGMHEKQEELENIVARFVRKEAAVCFGMGFATNSTXXXXXXXXXXXXXXDELNHASLVLGTRLSGAKVYVFKHNDMEDLERILRTCIVQGQPRTHRPWKRMIIVVEGIYSMEGSIVKLPEIIEXXXXXXXXXXXDEAHSIGALGPNGRGVVDYFGLDTTDIDIMMGTFTKSFGASGGYIAAEKHLVDHIRXXXXXXXXXXTMAPTVMQQVISSMKIIMGEDGTNEGARRLKQLKDNIIMFRQKLEDKGFIIYGHEASPVIPLLLYMPAKIAAFSREMLKRGVGVVVVGFPATPIIESRSRFCLSAAHTPEMLNEVLDALDDVGNILQLKYSR 1684
             + FEETP++VAV+TY+GYGVL +FGY RDFLR ++ EK   A E+  +  FV LY DFE+FYTRNLY RIRD WNRPICSV GA V +++R S DYNW+F  TG   + VINMGSYNYLGF   TG C +AA   +   G G  STR E G  +K EELE +VARF+  EAA+ +GMGFATNS  IP+++G GC I+SDELNHASLVLG RLSGA + +FKHN+M+ LE++L+  IV GQPRT RPWK+++I+VEGIYSMEGSIV+LPE+I LKKKYKAYLYLDEAHSIGALGP GRGVV+YFGLD  D+D+MMGTFTKSFGASGGYI  +K L+D++R  S+S+ YA +++P V++Q+I+SMK IMG+DGT+ G   ++QL +N   FR++L++ GFIIYG+E SPV+PL+LYMPAKI AF REMLKR +GVVVVGFPATPIIESR+RFCLSAAHT E+L+  L  +D+VG++LQLKYSR
Sbjct:   60 NEAFEETPMLVAVLTYVGYGVLTLFGYLRDFLRYWRIEKCHHATEREEQKDFVSLYQDFENFYTRNLYMRIRDNWNRPICSVPGARVDIMERQSHDYNWSFKYTGNIIKGVINMGSYNYLGFARNTGSCQEAAAKVLEEYGAGVCSTRQEIGNLDKHEELEELVARFLGVEAAMAYGMGFATNSMNIPALVGKGCLILSDELNHASLVLGARLSGATIRIFKHNNMQSLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEAHSIGALGPTGRGVVEYFGLDPEDVDVMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSAVYATSLSPPVVEQIITSMKCIMGQDGTSLGKECVQQLAENTRYFRRRLKEMGFIIYGNEDSPVVPLMLYMPAKIGAFGREMLKRNIGVVVVGFPATPIIESRARFCLSAAHTKEILDTALKEIDEVGDLLQLKYSR 541
The following BLAST results are available for this feature:
BLAST of TCONS_00056302 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPTC20.000e+064.52Serine palmitoyltransferase 2 OS=Homo sapiens GN=S... [more]
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