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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056305 ID=TCONS_00056305|Name=TCONS_00056305|organism=Clytia hemisphaerica|type=transcript|length=811bp
CCTATATGGCGGACAAATGATTTGTTATTGTTGATATCCTTCACAAAATA
ATTGGAGATAGCCCAATTTTATGATCTAGTTGAGTTTTGGGGAAAAGAGG
CGTTACTACAGCTACTGTTGTCCAGCAACGAACTTTGCAACCAAGCAGCA
TATCTTTCATCTTTGATAagaaaaatgtCCCGGGCCACAATCCTCATACA
AATCGCTATATGCGCATGCGTGGCAATCGCTATTGTCCAATCGCAACAGG
AGACAGCTGAAGTCGTGCACGACATAAGCTCACAAGCCCGATGTGGACTC
GTGTACGGTCTTGTATCTACCGATTGCCGATGGGAATCGGGGCTCTCATT
CAATGCTGATCAGGAAGTTCTTGGAGGACGGATAGCCGCATATAAAATCC
TTTGGCCCAAAGGTTGGGGAATGACCTGGTACGTACCGGGTGTCAACGAT
TTAGATAAACGGTACAACGTTTACGGGAATTCTCTTTGTAGTTATGAGAA
GAAAGATAACTCCATGCGAAGAAAATGGGCCTATTTTACGAGATATCCAC
ATATGTATATTTTATGCAAACATCGTGAAGACAATCCCAATCGTAGGCGA
CAGACAAGGCgatcttgaaattttcagtagttACCAGCACCAAACCACAA
GACAGAAACTTTATAGATTCCCAAAGgttttggatttcttttttctttta
aaagtgttGGAATGAAGTTTTCCAACTAAGCTTTCTGTATCCTAAAGGAC
TTTGAGCTCAATGGCCACcctttgattttgtaatctttATATTCCCAACT
TTAAATATGAT Run BLAST on NCBI transcript from alignment at scaffold_272:43942..46286+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056305 ID=TCONS_00056305|Name=TCONS_00056305|organism=Clytia hemisphaerica|type=transcript|length=2345bp|location=Sequence derived from alignment at scaffold_272:43942..46286+ (Clytia hemisphaerica)
CCTATATGGCGGACAAATGATTTGTTATTGTTGATATCCTTCACAAAATA
ATTGGAGATAGCCCAATTTTATGATCTAGTTGAGTTTTGGGGAAAAGAGG
CGTTACTACAGCTACTGTTGTCCAGCAACGAACTTTGCAACCAAGCAGCA
TATCTTTCATCTTTGATAGTAAGTTAAAGGGGTCATTTTGTCATTGCTAA
GACCCCTCATTTATTAGTAGGGAGCCGAAATATTAGGATTTGTGACAACT
TTGGAGCGTAAAACCCTgaagctgtctattgtgtagactagctGCTAAGG
CCTGGAAATTTTTATGGGATAAAGTCTGACACTTCAAGTAATAAAACTGC
GAAAAGGCGGAAAGTGAGTGAAATTACCaggtttttacttttttctagTT
TCGATtgtatactttaatcgtagaaattttagcgagattaattttagcgt
atattagcgagtcagaaaaatctagattttttttggatttattttagcga
atcacgatttcaaaaaatttcgcgtggataaattttagcgaatactcgta
ttacattattgactgNNaatgtatcaaggcaatataaccagaaatttcgc
gcggataaattttagcgatctgtcgattcggcgtgttttagcgagatNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgattcggcgtg
ttttagcgagatttattttagcgaaaatagggaaaactcgctaaaacgct
aaaattagtctcgctaaaatttctacgattaaagtagtcaGACTTTACCC
CAAATAAAAACTTAAGCagaatgggctgttccataaaaaaacatactctt
aggttccaaataaacgggccccccccccgcttgttaattttttcgaaaat
tttccaaccccccggaccttattaggacccccccgtttattaatttctaa
gaatattttcagctgtcaaagagaataccccttattttgctctaaatagc
ctgattttagcctatttttaccttatttttgggtttcagaagtacaattt
ccaaccccccctgtttattaaaatctagaaaattttccaatccccccccc
cccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNtacagggggtggacgaaccttttcaagtcaaaaagaaattat
tgaaaatgtgtggataaccactgaaaaatggcaaaatttgcaaaaatacc
cttgaaaaatttcttttcataccttttaAAGCATagatggacgaactaaa
atcagtcttttaaaccctggaaattttagaataactttttaccctgttgg
aaaaatgagaaaacaccccctggaaatttatCCCAGATTACCCTCTAGAA
ATGTTCGtccaaccccccccctccccTGTGTAAATATAAAATGGCtaact
aaaaaataatttacagtCTTTGATTTCTATAAAATTGCAACAAAACTATT
TTTTCTGCAGATAATATCCTATCTCTCAAAGTAACAAATTCCTTCGGGGC
AATTACAGAAGCCAAATAGTCACTTcaatttctacttttttttcaatttt
agagaaaaatgtCCCGGGCCACAATCCTCATACAAATCGCTATATGCGCA
TGCGTGGCAATCGCTATTGTCCAATCGCAACAGGAGACAGCTGAAGTCGT
GCACGACATAAGCTCACAAGCCCGATGTGGACTCGTGTACGGTCTTGTAT
CTACCGATTGCCGATGGGAATCGGGGCTCTCATTCAATGCTGATCAGGAA
GTTCTTGGAGGACGGATAGCCGCATATAAAATCCTTTGGCCCAAAGGTTG
GGGAATGACCTGGTACGTACCGGGTGTCAACGATTTAGATAAACGGTACA
ACGTTTACGGGAATTCTCTTTGTAGTTATGAGAAGAAAGATAACTCCATG
CGAAGAAAATGGGCCTATTTTACGAGATATCCACATATGTATATTTTATG
CAAACATCGTGAAGACAATCCCAATCGTAGGCGACAGACAAGGCgatctt
gaaattttcagtagttACCAGCACCAAACCACAAGACAGAAACTTTATAG
ATTCCCAAAGgttttggatttcttttttcttttaaaagtgttGGAATGAA
GTTTTCCAACTAAGCTTTCTGTATCCTAAAGGACTTTGAGCTCAATGGCC
ACcctttgattttgtaatctttATATTCCCAACTTTAAATATGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056305-exon-scaffold_272-1491911889:43942..44109 | TCONS_00056305-exon-scaffold_272-1491911889:43942..44109 | Clytia hemisphaerica | exon |
| TCONS_00056305-exon-scaffold_272-1510915933:43942..44109 | TCONS_00056305-exon-scaffold_272-1510915933:43942..44109 | Clytia hemisphaerica | exon |
| TCONS_00056305-exon-scaffold_272-1575043694:43942..44109 | TCONS_00056305-exon-scaffold_272-1575043694:43942..44109 | Clytia hemisphaerica | exon |
| TCONS_00056305-exon-scaffold_272-1491911889:45644..46286 | TCONS_00056305-exon-scaffold_272-1491911889:45644..46286 | Clytia hemisphaerica | exon |
| TCONS_00056305-exon-scaffold_272-1510915933:45644..46286 | TCONS_00056305-exon-scaffold_272-1510915933:45644..46286 | Clytia hemisphaerica | exon |
| TCONS_00056305-exon-scaffold_272-1575043694:45644..46286 | TCONS_00056305-exon-scaffold_272-1575043694:45644..46286 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_272 | supercontig | scaffold_272:43942..46286 + |
Blast
The following BLAST results are available for this feature:
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